mRNA_L-elsbetiae_contig14057.3026.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14057.3026.1
Unique NamemRNA_L-elsbetiae_contig14057.3026.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14057.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14057contigL-elsbetiae_contig14057:49..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size558
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.3034644-CDS-L-elsbetiae_contig14057:48..6061622815556.3034644-CDS-L-elsbetiae_contig14057:48..606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14057 49..606 +
1691682957.4586928-CDS-L-elsbetiae_contig14057:48..6061691682957.4586928-CDS-L-elsbetiae_contig14057:48..606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14057 49..606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.316204-UTR-L-elsbetiae_contig14057:606..6111622815556.316204-UTR-L-elsbetiae_contig14057:606..611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 607..611 +
1691682957.4704633-UTR-L-elsbetiae_contig14057:606..6111691682957.4704633-UTR-L-elsbetiae_contig14057:606..611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 607..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14057.3026.1prot_L-elsbetiae_contig14057.3026.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14057 49..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14057.3026.1

>prot_L-elsbetiae_contig14057.3026.1 ID=prot_L-elsbetiae_contig14057.3026.1|Name=mRNA_L-elsbetiae_contig14057.3026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
MPKPLIPRDVPGRAAPPAAPDSPPPPSDPPTVSPAAAGGVAAAKASLSAA
NFLFSSSIILFSLSATRFSLSAAAKLFFISSSCTRSSSILSISVPQPPTA
RRRPRHSSSCSKRVIPPGAHLFQKLAHARKTRGCLCSHARITRSCVSAAL
TTSFPSSACRLQRSCLCAGARPKLARCGLLSEAPQ*
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mRNA from alignment at L-elsbetiae_contig14057:49..611+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14057.3026.1 ID=mRNA_L-elsbetiae_contig14057.3026.1|Name=mRNA_L-elsbetiae_contig14057.3026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=563bp|location=Sequence derived from alignment at L-elsbetiae_contig14057:49..611+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAAAACCACTCATACCTCGTGATGTCCCCGGAAGAGCTGCCCCTCC
AGCAGCCCCAGATAGCCCGCCGCCGCCGTCGGATCCGCCGACGGTCTCGC
CAGCAGCAGCGGGCGGTGTAGCTGCCGCTAAGGCCTCCCTCTCAGCAGCA
AATTTCTTGTTTTCGTCCTCCATTATTTTATTTTCCCTCTCCGCTACGCG
CTTCTCCCTCTCAGCCGCAGCCAAACTCTTCTTCATTTCCTCCAGCTGCA
CCCGCAGCTCCTCCATACTCTCCATATCTGTACCGCAACCACCCACAGCT
CGCCGGCGACCCCGCCACAGCAGCTCTTGCTCAAAACGGGTTATACCTCC
CGGAGCGCACCTCTTTCAAAAACTCGCGCACGCCCGGAAGACCCGTGGCT
GCTTATGTTCGCACGCTCGGATAACCCGCAGCTGCGTATCGGCGGCCCTC
ACGACCTCTTTTCCTTCCAGCGCCTGCAGGCTCCAACGATCGTGTTTATG
TGCTGGTGCGAGGCCTAAGTTAGCTCGCTGCGGACTGTTGTCGGAGGCGC
CCCAATAGTATAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14057:49..611+

>mRNA_L-elsbetiae_contig14057.3026.1 ID=mRNA_L-elsbetiae_contig14057.3026.1|Name=mRNA_L-elsbetiae_contig14057.3026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig14057:49..611+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAAAACCACTCATACCTCGTGATGTCCCCGGAAGAGCTGCCCCTCC
AGCAGCCCCAGATAGCCCGCCGCCGCCGTCGGATCCGCCGACGGTCTCGC
CAGCAGCAGCGGGCGGTGTAGCTGCCGCTAAGGCCTCCCTCTCAGCAGCA
AATTTCTTGTTTTCGTCCTCCATTATTTTATTTTCCCTCTCCGCTACGCG
CTTCTCCCTCTCAGCCGCAGCCAAACTCTTCTTCATTTCCTCCAGCTGCA
CCCGCAGCTCCTCCATACTCTCCATATCTGTACCGCAACCACCCACAGCT
CGCCGGCGACCCCGCCACAGCAGCTCTTGCTCAAAACGGGTTATACCTCC
CGGAGCGCACCTCTTTCAAAAACTCGCGCACGCCCGGAAGACCCGTGGCT
GCTTATGTTCGCACGCTCGGATAACCCGCAGCTGCGTATCGGCGGCCCTC
ACGACCTCTTTTCCTTCCAGCGCCTGCAGGCTCCAACGATCGTGTTTATG
TGCTGGTGCGAGGCCTAAGTTAGCTCGCTGCGGACTGTTGTCGGAGGCGC
CCCAATAGATGCCAAAACCACTCATACCTCGTGATGTCCCCGGAAGAGCT
GCCCCTCCAGCAGCCCCAGATAGCCCGCCGCCGCCGTCGGATCCGCCGAC
GGTCTCGCCAGCAGCAGCGGGCGGTGTAGCTGCCGCTAAGGCCTCCCTCT
CAGCAGCAAATTTCTTGTTTTCGTCCTCCATTATTTTATTTTCCCTCTCC
GCTACGCGCTTCTCCCTCTCAGCCGCAGCCAAACTCTTCTTCATTTCCTC
CAGCTGCACCCGCAGCTCCTCCATACTCTCCATATCTGTACCGCAACCAC
CCACAGCTCGCCGGCGACCCCGCCACAGCAGCTCTTGCTCAAAACGGGTT
ATACCTCCCGGAGCGCACCTCTTTCAAAAACTCGCGCACGCCCGGAAGAC
CCGTGGCTGCTTATGTTCGCACGCTCGGATAACCCGCAGCTGCGTATCGG
CGGCCCTCACGACCTCTTTTCCTTCCAGCGCCTGCAGGCTCCAACGATCG
TGTTTATGTGCTGGTGCGAGGCCTAAGTTAGCTCGCTGCGGACTGTTGTC
GGAGGCGCCCCAATAG
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