mRNA_L-elsbetiae_contig14008.3000.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14008.3000.1
Unique NamemRNA_L-elsbetiae_contig14008.3000.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14008.3000.1 vs. uniprot
Match: D8LCI9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI9_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 2.090e-83
Identity = 131/149 (87.92%), Postives = 140/149 (93.96%), Query Frame = 1 
Query:   67 MRLQQKTALQKVGVLVRAGMMEPPKWYAAAKQVPPFQRRPSNGIEALKLPWDTLANEFVTRNPHMVEDPEWLGPQGFEPGAPPISHVFAKRQYALIQNGVTKEEAYELTHESMKKERSADVAAVQRMVKEASSMSGARPSFVSDDDVYS 513
            MRLQQKTALQKV VLV+AGMMEPPKWYAAAKQVPPFQRRPSNGIEALKLPWDTLANEF +RNPHMVEDPEWLGP+GF PGAPPISHVFAKRQYAL+QNG+ KE+AYE TH  MK ERSADVAAVQ+MV+EASSM+G RPSFVSDDDVYS
Sbjct:    1 MRLQQKTALQKVSVLVKAGMMEPPKWYAAAKQVPPFQRRPSNGIEALKLPWDTLANEFASRNPHMVEDPEWLGPRGFRPGAPPISHVFAKRQYALMQNGLMKEDAYERTHALMKMERSADVAAVQKMVREASSMAGGRPSFVSDDDVYS 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14008.3000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCI9_ECTSI2.090e-8387.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14008contigL-elsbetiae_contig14008:1094..4113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002740.1
Exons4
Model size513
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14008.3000.1prot_L-elsbetiae_contig14008.3000.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14008 1094..4113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.5922961-CDS-L-elsbetiae_contig14008:1093..11251622815553.5922961-CDS-L-elsbetiae_contig14008:1093..1125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 1094..1125 +
1691682955.9176176-CDS-L-elsbetiae_contig14008:1093..11251691682955.9176176-CDS-L-elsbetiae_contig14008:1093..1125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 1094..1125 +
1622815553.603798-CDS-L-elsbetiae_contig14008:2288..24181622815553.603798-CDS-L-elsbetiae_contig14008:2288..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 2289..2418 +
1691682955.9273632-CDS-L-elsbetiae_contig14008:2288..24181691682955.9273632-CDS-L-elsbetiae_contig14008:2288..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 2289..2418 +
1622815553.6163385-CDS-L-elsbetiae_contig14008:3090..32891622815553.6163385-CDS-L-elsbetiae_contig14008:3090..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 3091..3289 +
1691682955.9362586-CDS-L-elsbetiae_contig14008:3090..32891691682955.9362586-CDS-L-elsbetiae_contig14008:3090..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 3091..3289 +
1622815553.6294448-CDS-L-elsbetiae_contig14008:3961..41131622815553.6294448-CDS-L-elsbetiae_contig14008:3961..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 3962..4113 +
1691682955.9461825-CDS-L-elsbetiae_contig14008:3961..41131691682955.9461825-CDS-L-elsbetiae_contig14008:3961..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14008 3962..4113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14008.3000.1

>prot_L-elsbetiae_contig14008.3000.1 ID=prot_L-elsbetiae_contig14008.3000.1|Name=mRNA_L-elsbetiae_contig14008.3000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
ARGPFVHSLLRDTYIHTEAAGTMRLQQKTALQKVGVLVRAGMMEPPKWYA
AAKQVPPFQRRPSNGIEALKLPWDTLANEFVTRNPHMVEDPEWLGPQGFE
PGAPPISHVFAKRQYALIQNGVTKEEAYELTHESMKKERSADVAAVQRMV
KEASSMSGARPSFVSDDDVYS
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mRNA from alignment at L-elsbetiae_contig14008:1094..4113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14008.3000.1 ID=mRNA_L-elsbetiae_contig14008.3000.1|Name=mRNA_L-elsbetiae_contig14008.3000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3020bp|location=Sequence derived from alignment at L-elsbetiae_contig14008:1094..4113+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGAGGTCCGTTCGTCCACTCTCTACTGAGGTGAGGGCCCCACAATGT
ATTTCTTCTTGTGCGTTGCCTAGTATTTCTAGGTCGTAGGGCATGCGATA
TATGGGGCTGCTTCTTGTGCGATACGAGAAAAGTATTTGCTGCCTCTGCC
CGCCAGTTTCCGCAGGAGGTGTGACTGCCCTCTCCGTGTTCTCGCCCTCA
TCAAGCGTATGGAGACGCCTCTGTAGGATGTATAGCCCAGCGGAGATTGC
TCTGCAGCAGTTTATCGTTCTACACCTTGGTCTCATGGTGTGGTGCCGGA
AGTTTGGGCAGCCTTCCCCAGGGGCGTCTACTTTACGCTGTGTCACGGGC
GGCTCTCGGCGAGTGTGGGGCAGTGGGGGCGAGTCAGTCGACTAGCCCTC
CTAAGGTTGTACGTGTAGTTCGGGCTGTGTGTGCAAAAGGAAATTTGGCA
ACACCGTCGGTTTGTTTCGCCCGTGTTCGGGAGAAGAGAGACGGAGAGAG
AGCCCAGGACGAGTGCATAGTTCGCTGACGCTAGATAACACCCCCCGCAC
GTGTTACGTGAGGGTAACTTTACGATCAAGGCGTGTGATGCAAACGAGAG
CGGTGCGCCATTTGGAAAGTTCTTGTGCAGGCAGGCGAGTTGAATATCGC
CTTCGTGTAGCGAGCACACCAACGTGTACACTCAACCCTCTGTCGGTTCT
GTTTCTGGACACACCATCGCCTTGTGTGTACATAGACTTGGCGCACGGGA
CAAACGCACACCGGAATGGACCACGATGATCGAGCGTGCGTCCCTGCACA
GTCACGACACTAACTATTTTTTCGTCCAAGAGAGAGAGAGAGAGAGAGCG
GGGGGGGGGGGGTGCAAGGCTTGTATTCAAGGCCAGCGGAGCTTGTGTCT
CTTCGAGCGTCTATTCGCAGGTCTGATTTGCGTTTGTGTTCGCCAACTGC
ACCGAGTCGGTCTACTACTCTCTGAAGCGGCGTGTTGCCATCTACGTATG
TATGTAGGCTGGTGTTTTTCTTCGGCGCTTCGGCATGTGATGGAGGTACC
CCTGCTGCTTCTTCTTTACTGCTGCCACAAAGCATAGTCACGCGTGCTGC
TCAACCCCGTCATCTTCCTCGTGCGTTCGGCCCTGGCTTGGGGCTTCGTT
CAACGTGTACTCTGCCGCCGCGGCGTGCTGTCACGACACGCGCAGAGATA
CATACATACATACAGAGGCAGCAGGCACCATGCGTCTCCAGCAGAAGACC
GCCCTGCAGAAGGTCGGTGTGCTGGTCCGGGCCGGCATGATGGAACCTCC
CAAGTGGTACGCCGCGGCGAAACAGGTGCGAGCGAAGGAGGGAAGAAAGG
AAGCACGTTTCGGGTGTCGGGCCGGCGTGAGTCTGCCAACATAGCGGACG
CCAGTCGCAGCCACAGGTGGCGAACGACAAACGAAACACACAAAGAGCCA
CTGCGAAGCACGAACATAATCCTACTCGGGGGGGGGGGGGGGGGGGGGGC
CCCCGGGGGGCGGCTTCACCCCAAAACAAAAAGCAATTGGGTGCTCCCTT
CCCCCCGGCCTCCTCNNNNNNNNNNCCCCGCCCGACGCCCCCGGCCGAAC
GCAAAAACAAAACCAAACAAACAATCGAACAACCGGCGAAGGCGGGGCCG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTGGGCACCGAG
ATGGCGTTTCATCTCCAAACACAAGATAATTGGCTGCTCCTTTTCATCAT
GCTCTCTCCTTGAGCTCTAAAAGGCGGATGCTAAAAGCTATGCGAGCGCA
TTGGACCTGAGCCTACCTCTCTGCCACCCGCTCCAGCATTGCCCGCACAA
TGGTGACGTCAGCAAAATTGTCCTGCCTACATCCATGACGGAGCTGCCGT
AGTACGTATGTACCCCTCTAGCCGAAGGCCACAGGGCCCATCACCTTCCG
CGCCCCCTACCCCCCCCCCCTCGCCCCGCGCCCCTTGTCTCCCGCAGGTG
CCTCCCTTCCAAAGACGCCCGTCCAACGGCATCGAGGCGCTGAAGCTGCC
GTGGGACACCCTGGCCAACGAGTTTGTCACCCGGAACCCCCACATGGTGG
AGGACCCCGAGTGGCTGGGTCCCCAGGGTTTCGAGCCGGGGGCCCCTCCC
ATCAGCCACGTGTTCGCCAAGCGCCAGTACGCCTTGATTCAGAATGGTGC
GCCATGATTTTCGGGGAGAAGAGGAGAGGGGTGGTTCTCAGGGCGCATAG
CGGGCGCGGAGGGAGGGCAGTTCTACTACTTTGATGCTGTTTTGCCCCCC
CCCCCCCCCCCCCCCCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
GGGGGGGGGGGGGGGGGGGTTGCCACGGGGCCCGGGGTGTTTTTNNNNNN
NNNNCCCCCCCCCTCCATCGTTTTGGCGGGCCGCAGGGGGGGGGGGGGGG
GGGGGGTGTTTTTTTTTTTTTGGTTTTTTTTTCCCCCCCCCCCCCCCCCC
CGCCTGATGGGAGGAAGGGGTTCGATAGGCGTGCGCGTGTGCATGGATGA
GCTGGTGTGCATGCATCCCACGTGCACCTGGTATTTTGCCGCAGCAGGTT
GGCTAGAACCAAGCAGCAGCAACAGCAGCAGAGTTGTTATATCCGCAAGA
CGGGGAGGTCTTTTGCAGCCGTGTCTGCCGGTTTGGACGGCAAGTGACTA
AAACCACGTCACTATATAACTCTTTTAAGGTATAAGTTAGCCTGTGACCA
CCGGAATTGAGCTGGAATAGTACGGACGTGAGGAGATACTGGGTGGAAAG
ATCGGAACGGTTTTTAATATGAAGAAACAACAACAACATTAACAATAAAA
ACTTATCAACTACTGTAGGGGTCACGAAAGAGGAGGCGTACGAGCTCACG
CACGAATCCATGAAGAAGGAGCGCTCGGCGGATGTGGCGGCGGTGCAAAG
GATGGTAAAGGAGGCGTCCTCCATGTCCGGCGCCCGGCCCAGCTTCGTGT
CCGACGACGACGTCTACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14008:1094..4113+

>mRNA_L-elsbetiae_contig14008.3000.1 ID=mRNA_L-elsbetiae_contig14008.3000.1|Name=mRNA_L-elsbetiae_contig14008.3000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig14008:1094..4113+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGAGGTCCGTTCGTCCACTCTCTACTGAGGCCAGAGGTCCGTTCGTC
CACTCTCTACTGAGAGATACATACATACATACAGAGGCAGCAGGCACCAT
GCGTCTCCAGCAGAAGACCGCCCTGCAGAAGGTCGGTGTGCTGGTCCGGG
CCGGCATGATGGAACCTCCCAAGTGGTACGCCGCGGCGAAACAGAGATAC
ATACATACATACAGAGGCAGCAGGCACCATGCGTCTCCAGCAGAAGACCG
CCCTGCAGAAGGTCGGTGTGCTGGTCCGGGCCGGCATGATGGAACCTCCC
AAGTGGTACGCCGCGGCGAAACAGGTGCCTCCCTTCCAAAGACGCCCGTC
CAACGGCATCGAGGCGCTGAAGCTGCCGTGGGACACCCTGGCCAACGAGT
TTGTCACCCGGAACCCCCACATGGTGGAGGACCCCGAGTGGCTGGGTCCC
CAGGGTTTCGAGCCGGGGGCCCCTCCCATCAGCCACGTGTTCGCCAAGCG
CCAGTACGCCTTGATTCAGAATGGTGCCTCCCTTCCAAAGACGCCCGTCC
AACGGCATCGAGGCGCTGAAGCTGCCGTGGGACACCCTGGCCAACGAGTT
TGTCACCCGGAACCCCCACATGGTGGAGGACCCCGAGTGGCTGGGTCCCC
AGGGTTTCGAGCCGGGGGCCCCTCCCATCAGCCACGTGTTCGCCAAGCGC
CAGTACGCCTTGATTCAGAATGGGGTCACGAAAGAGGAGGCGTACGAGCT
CACGCACGAATCCATGAAGAAGGAGCGCTCGGCGGATGTGGCGGCGGTGC
AAAGGATGGTAAAGGAGGCGTCCTCCATGTCCGGCGCCCGGCCCAGCTTC
GTGTCCGACGACGACGTCTACAGCGGGTCACGAAAGAGGAGGCGTACGAG
CTCACGCACGAATCCATGAAGAAGGAGCGCTCGGCGGATGTGGCGGCGGT
GCAAAGGATGGTAAAGGAGGCGTCCTCCATGTCCGGCGCCCGGCCCAGCT
TCGTGTCCGACGACGACGTCTACAGC
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