mRNA_L-elsbetiae_contig13914.2945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13914.2945.1
Unique NamemRNA_L-elsbetiae_contig13914.2945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13914.2945.1 vs. uniprot
Match: A0A6H5KLK6_9PHAE (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.220e-17
Identity = 62/109 (56.88%), Postives = 69/109 (63.30%), Query Frame = 2 
Query:  269 EVVGDVIDILMAVGDFTEFKGMMVAHRKGRENGLVLTAAPVAIEAAMEARGGRQEQAKRGDAGVPSTG--VSGAGGIPTRG---------AGRRREVSGA-ANTAESKW 559
            EVVGDVIDILMAVGDF EFKGMMVAHRKGR+NGLV+T+A    E   EA+ G     +RG  G PS G   SG GG   +          AGRRR  S A + TAESKW
Sbjct:  121 EVVGDVIDILMAVGDFAEFKGMMVAHRKGRDNGLVVTSASAGEE---EAKTGWHRHVERGGVGDPSAGSTASGKGGSARQTCTVAGVGETAGRRRGTSDAFSTTAESKW 226
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BLAST of mRNA_L-elsbetiae_contig13914.2945.1 vs. uniprot
Match: D7FPD1_ECTSI (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.580e-13
Identity = 58/109 (53.21%), Postives = 65/109 (59.63%), Query Frame = 2 
Query:  269 EVVGDVIDILMAVGDFTEFKGMMVAHRKGRENGLVLTAAPVAIEAAMEARGGRQEQAKRGDAGVPSTG--VSGAGGIPTRG---------AGRRREVSGAANTA-ESKW 559
            EVV DV DILMAVGDF EFKGMMVAHRKGR+NGLV+T++ V  E   EA+ G  + A RG    PS G   S  GG   +          AG RR    A NTA ESKW
Sbjct:  130 EVVDDVSDILMAVGDFAEFKGMMVAHRKGRDNGLVVTSSSVGEE---EAKTGWHQHAGRGGVVDPSAGPTASAEGGSARQTCTVAGVGETAGIRRGTPDAFNTAAESKW 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13914.2945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLK6_9PHAE1.220e-1756.88ADP-ribosylation factor-like protein 2-binding pro... [more]
D7FPD1_ECTSI4.580e-1353.21ADP-ribosylation factor-like protein 2-binding pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13914contigL-elsbetiae_contig13914:1303..2888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog2880.D7FPD1
Preferred nameARL2BP
KEGG koko:K16742
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0002791,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010817,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030496,GO:0030695,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042325,GO:0042327,GO:0042509,GO:0042531,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0045935,GO:0045937,GO:0046425,GO:0046427,GO:0046883,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050708,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051223,GO:0051235,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0051716,GO:0060255,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0072595,GO:0080090,GO:0090087,GO:0090276,GO:0098772,GO:0140110,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:1904892,GO:1904894,GO:2001141
EggNOG free text desc.maintenance of protein location in nucleus
EggNOG OGs2A9TM@1,2RYJD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-15_003850.1
Exons1
Model size1586
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13914.2945.1prot_L-elsbetiae_contig13914.2945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13914 1601..1864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.4636273-UTR-L-elsbetiae_contig13914:1302..16001622815547.4636273-UTR-L-elsbetiae_contig13914:1302..1600Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13914 1303..1600 +
1691682952.3494282-UTR-L-elsbetiae_contig13914:1302..16001691682952.3494282-UTR-L-elsbetiae_contig13914:1302..1600Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13914 1303..1600 +
1622815547.497674-UTR-L-elsbetiae_contig13914:1864..28881622815547.497674-UTR-L-elsbetiae_contig13914:1864..2888Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13914 1865..2888 +
1691682952.3744814-UTR-L-elsbetiae_contig13914:1864..28881691682952.3744814-UTR-L-elsbetiae_contig13914:1864..2888Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13914 1865..2888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.4787064-CDS-L-elsbetiae_contig13914:1600..18641622815547.4787064-CDS-L-elsbetiae_contig13914:1600..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13914 1601..1864 +
1691682952.3612616-CDS-L-elsbetiae_contig13914:1600..18641691682952.3612616-CDS-L-elsbetiae_contig13914:1600..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13914 1601..1864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13914.2945.1

>prot_L-elsbetiae_contig13914.2945.1 ID=prot_L-elsbetiae_contig13914.2945.1|Name=mRNA_L-elsbetiae_contig13914.2945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MAVGDFTEFKGMMVAHRKGRENGLVLTAAPVAIEAAMEARGGRQEQAKRG
DAGVPSTGVSGAGGIPTRGAGRRREVSGAANTAESKW*
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mRNA from alignment at L-elsbetiae_contig13914:1303..2888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13914.2945.1 ID=mRNA_L-elsbetiae_contig13914.2945.1|Name=mRNA_L-elsbetiae_contig13914.2945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1586bp|location=Sequence derived from alignment at L-elsbetiae_contig13914:1303..2888+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCGTGGATAAGGCGGTCCTCTGGTAAAAATGAGGCTGCATTAAAGGGG
GGGGGGGGGGGGTGATACTGTACCGGAAAGTCATCGTTCAGCAGGACGTA
GGGAGAAACGGCCGAGGCAAGTAACGAAGAGCTCGTAGACTTGACGGATA
AACAAACACAAGTGAAGTTTTCCGAACTCTGTCTCCCTAGAAGTACACCA
ATGGCTCTTGTGTTTCGTTGACTCCCAAGGCAATTATTGCATGATTCAAA
TTCTGATTCGCTGCAGACGAGGTGGTCGGCGATGTGATCGACATCCTCAT
GGCTGTAGGAGATTTCACCGAGTTCAAGGGCATGATGGTCGCGCACCGGA
AGGGGCGCGAAAACGGGCTGGTGCTGACAGCCGCGCCGGTGGCGATAGAG
GCGGCGATGGAGGCCAGGGGAGGGCGCCAGGAGCAAGCGAAGAGGGGTGA
CGCAGGTGTCCCTTCGACGGGCGTGTCTGGTGCAGGGGGGATACCGACAA
GAGGAGCAGGACGGAGGCGCGAAGTCTCGGGTGCCGCCAACACCGCAGAA
AGCAAATGGTAGATAAACCACGAGAGGAGAGTTTCGTTGTGGAGATCGAA
GGCAGTGCGAGTGCAGTAGTAATGCATTTTTTTGGTGAACAAAAAGGTCA
AAGGAGTAGACGAATACAAGGCACATTGAAGACCAGATGAGGGGGGATCG
AGTTGGCTATTTTAGGTAAGAGCTCTGATTAAAGCTGGCGGGTTTTATTT
GTCTATGTTTTGTCCCATAAAGAGGGCAGAAGTAAACACTTCGAATGAGT
TCCACATAGTCTATGCCACGTACGTCAAGACAGTGGAAGGAAGGCCTGCA
GATGCAACCTTCTTTGTGTGTGTCGGAGTTGAGCAAAACGTTGGATACCT
ATCTAGAGTTATCTACATAATAGATAGATACTAAACAGTGCATTACCTGC
GAGAAATCAGCATGAATTAGATAGGCGGCGAGCCGTGGGTGGTTCACTGT
AAACGTTTCACCTACATATTCTGTGGATTAAGGCCATTACCAGCGGGCAC
GTTCATACGTTCATACTACTACTGAAGTGAGCGCGATCTAAGCGGTTCTT
CCGCTGTCGTCGCGGTGGTCTGCGTGCGTATTCTAAGAAAAAAGCAAGAG
CGGAAGACAAATGAAGAAAAGGAATGGCTCCAGATTTGGCAGCTGGTTGT
AAACGGTGTACTGTAGGGAGGTTCTTCTTTGATTTCCTGATTTTGACTCA
TATGTAGTTTAGATAAAATTTAAATGGATATCTATTCAGTTGACTATTGT
AAGAGAGGAGTTGAAAATCTCTGTTCGTATGCCTCCTGCAGCTCTGTCCC
TGGTGAATATAGAAAAAAAAGAGAGGAGAGCGGTTGAGATTTTCAACCCG
AGTTTTTTTCCCCTGATTCCATCTTCTCGCTCCACACAAAGCTGGGGGTA
TTGTGTCCAGCTTTGTTTTTCCCGCGCTAATGACCACGGGAATTGACCGC
ACCAAGTGCTGCAGTAGTAGTAGTACCCCCATAATAGGGATCGGAACGTT
TTTTCTTTGTGTGAAACAGCAGCAACAACAACAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13914:1303..2888+

>mRNA_L-elsbetiae_contig13914.2945.1 ID=mRNA_L-elsbetiae_contig13914.2945.1|Name=mRNA_L-elsbetiae_contig13914.2945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig13914:1303..2888+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGTAGGAGATTTCACCGAGTTCAAGGGCATGATGGTCGCGCACCG
GAAGGGGCGCGAAAACGGGCTGGTGCTGACAGCCGCGCCGGTGGCGATAG
AGGCGGCGATGGAGGCCAGGGGAGGGCGCCAGGAGCAAGCGAAGAGGGGT
GACGCAGGTGTCCCTTCGACGGGCGTGTCTGGTGCAGGGGGGATACCGAC
AAGAGGAGCAGGACGGAGGCGCGAAGTCTCGGGTGCCGCCAACACCGCAG
AAAGCAAATGGTAGATGGCTGTAGGAGATTTCACCGAGTTCAAGGGCATG
ATGGTCGCGCACCGGAAGGGGCGCGAAAACGGGCTGGTGCTGACAGCCGC
GCCGGTGGCGATAGAGGCGGCGATGGAGGCCAGGGGAGGGCGCCAGGAGC
AAGCGAAGAGGGGTGACGCAGGTGTCCCTTCGACGGGCGTGTCTGGTGCA
GGGGGGATACCGACAAGAGGAGCAGGACGGAGGCGCGAAGTCTCGGGTGC
CGCCAACACCGCAGAAAGCAAATGGTAG
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