mRNA_L-elsbetiae_contig13902.2935.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: D7FP55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP55_ECTSI) HSP 1 Score: 206 bits (524), Expect = 6.330e-66 Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGGEASEQA 330 PPTPDPLSTTTAVKVLIDQFVQAP+FTVVIFGVLGLLEGK VADIREQL+QDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKG GEA E+A Sbjct: 88 PPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 197
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A6H5L0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V0_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.160e-65 Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGGEASEQA 330 PPTPDPLSTTTAVKVLIDQFVQAP+FTVVIFGVLGLLEGK VADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKG GEA E+A Sbjct: 163 PPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 272
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7S3PZB9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZB9_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.360e-43 Identity = 72/109 (66.06%), Postives = 89/109 (81.65%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGGEASEQ 327 PPT DPLS TT +KV+IDQFVQAP+FTV+IF LGLLEGK+ +D++EQLD+DYK TM ANW ++VPA VN+AFCPP LRVLFLN VFF W+IFLS ++ G EA ++ Sbjct: 151 PPTEDPLSATTGIKVVIDQFVQAPIFTVIIFFFLGLLEGKSASDVKEQLDRDYKDTMFANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNSDGEEAPKE 259
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: B8BXV6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV6_THAPS) HSP 1 Score: 148 bits (373), Expect = 5.030e-43 Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPTPDP + TT +KVL+DQF+QAP+FTV+IF LG LEGKTV +I++QLD DY TMLANW ++VPA VN+AFCPP LRVLFLNVVFF W+IFLS ++K Sbjct: 91 PPTPDPFTATTGIKVLVDQFIQAPIFTVIIFAFLGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 191
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7S1YNW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNW0_9STRA) HSP 1 Score: 147 bits (372), Expect = 6.160e-42 Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPT DP ++TTA+KV+IDQF+QAP+FTV+IFG LG+LEGK++ I+EQLD+DY TMLANW ++VPA VN+AFCPP LRVLFLNVVFF W+IFLS ++K Sbjct: 171 PPTEDPFTSTTAIKVIIDQFIQAPIFTVIIFGFLGVLEGKSLDSIKEQLDEDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 271
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7R9W596_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W596_9STRA) HSP 1 Score: 147 bits (370), Expect = 9.500e-42 Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGGEASEQA 330 PPT +P +TTT VKV+IDQFVQAP+FTV+IF LGLLEGKT I+ QLD+DYK TMLANW ++VPA VVN+AFCPP LRVLFLNVVFF W+IFLS ++K E S+QA Sbjct: 154 PPTVEPWTTTTGVKVVIDQFVQAPIFTVLIFIFLGLLEGKTTDAIKSQLDEDYKDTMLANWKLWVPATVVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNKNE-EPSQQA 262
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7S2GUW6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUW6_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.290e-41 Identity = 70/101 (69.31%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPT DP +TTT VKV+IDQF+QAP+FTV+IFG LG LEGKT+ I++QLD DY TMLANW ++VPA VVN+AFCPP LRVLFLN VFF W+IFLS ++K Sbjct: 150 PPTEDPFTTTTGVKVVIDQFIQAPIFTVLIFGFLGALEGKTLDSIKKQLDDDYTDTMLANWKLWVPATVVNIAFCPPVLRVLFLNCVFFFWSIFLSLKLNK 250
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7S2W2E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2E8_9STRA) HSP 1 Score: 144 bits (362), Expect = 8.720e-41 Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPT DP +TTT +KV IDQFVQAPVFTV+IF LGLLEGKT+ +++QLD DYK TM+ANW ++VPA VN+AFCPP LRVLFLN VFF W+IFLS ++K Sbjct: 136 PPTADPFTTTTGIKVAIDQFVQAPVFTVLIFYFLGLLEGKTMESVKQQLDNDYKDTMIANWKLWVPATAVNIAFCPPLLRVLFLNCVFFFWSIFLSLKLNK 236
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: K0R1J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1J6_THAOC) HSP 1 Score: 144 bits (363), Expect = 1.020e-40 Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPT DP + TT VKVLIDQFVQAP+FTV+IF LG LEGKT +I++QLD DYK TM+ANW ++VPA VN+AFCPP LRVLFLN VFF W+IFLS ++K Sbjct: 151 PPTEDPFTATTGVKVLIDQFVQAPIFTVIIFAFLGFLEGKTSEEIKQQLDDDYKDTMIANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNK 251
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Match: A0A7S2XVN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN5_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.650e-39 Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 1 Query: 1 PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 303 PPT D +TTTAVKV IDQFVQAPVFTV+IF LGLLEGK ++ IR QL DY ST+ ANW ++VPAA NLAFCPP+LRVLF N+VFF W+IF+S VV+K Sbjct: 139 PPTEDAFTTTTAVKVFIDQFVQAPVFTVLIFVALGLLEGKALSSIRTQLKDDYWSTLQANWKLWVPAATFNLAFCPPQLRVLFTNLVFFFWSIFISLVVNK 239 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13902.2935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13902.2935.1 >prot_L-elsbetiae_contig13902.2935.1 ID=prot_L-elsbetiae_contig13902.2935.1|Name=mRNA_L-elsbetiae_contig13902.2935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp PPTPDPLSTTTAVKVLIDQFVQAPVFTVVIFGVLGLLEGKTVADIREQLDback to top mRNA from alignment at L-elsbetiae_contig13902:1..2207+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13902.2935.1 ID=mRNA_L-elsbetiae_contig13902.2935.1|Name=mRNA_L-elsbetiae_contig13902.2935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2207bp|location=Sequence derived from alignment at L-elsbetiae_contig13902:1..2207+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13902:1..2207+ >mRNA_L-elsbetiae_contig13902.2935.1 ID=mRNA_L-elsbetiae_contig13902.2935.1|Name=mRNA_L-elsbetiae_contig13902.2935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig13902:1..2207+ (Laminarionema elsbetiae ELsaHSoW15)back to top |