mRNA_L-elsbetiae_contig1390.2933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig1390.2933.1
Unique Name	mRNA_L-elsbetiae_contig1390.2933.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.390e-22
Identity = 118/331 (35.65%), Postives = 148/331 (44.71%), Query Frame = 1

Query:   73 ARETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSGNVLHEAVRGGQTALVNKLLDSGAELDSPNFRGSYPLHYAAAGQHGSAEVXXXXXXXXXXXXXXXXXXXXXXXXXADCGHIETGSHVAEALLTLGADIGLRYGRLKKSAMHLAARNGHTHMLRVLEKHGGDVNDEDVDGHTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---YAATYAGKRGAADVVNALLTWGADPLAMSSDGKTAADVVGERVAEEDRLEDDVERVHELLERA 1056
            AR  LRG E+RIFD+ A  CTP QW   ++  LE AA  G E L++KLVEAG   G  +H AVRGG   +   LL+SGA   + +  G  PL             XXXXXXXXXXXXXXXXXXXXXXXXX                    ADI  RYG  + SA+ + A  GH   +R L +HG DV+  +  G   L                                                                      Y AT AGK+G  +VV+ LL WGAD   ++ +G  AAD +G +V EEDR+ ++ E V +LL  A
Sbjct:    6 ARGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANA 330

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.050e-13
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1

Query:   70 AARETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSGNV-LHEAVRGGQTALVNKLLDSGAEL 315
            AA+ETL+G E+R+ D++ +   P +  EWL APLE A A GDE L+QKLV+AG + G V LHEAVR G  A+   LL++GA +
Sbjct:   14 AAKETLKGEEERVLDLMLDTRCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASV 96

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D7G2K5_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  136 PDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSGNVLHEAVRGGQTALVNKLLDSGAELDSPNFRGSYPLHYAAA 363
            P +W EWL+APLE AAA GD+ L+ +LV AGG SG+ +H AV G    L   LL +GA +D  + +G   LH AAA
Sbjct:   29 PKKWAEWLRAPLEAAAARGDQTLALELVGAGGASGSAVHAAVSGCHVGLAGSLLRTGAPVDGKDSQGCTALHVAAA 104

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.650e-9
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query:   46 SSIMPQIIAARETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSG---------NVLHEAVRGGQTALVNKLLDSGAELD 318
            SSI+P        L+ L    F ++ +R TPDQW EWL+APLE AAA G+  L  KL+ AG   G          +LH A  GG   ++ +L ++GA  D
Sbjct:   40 SSIIPGYEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGED 139

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.600e-8
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1

Query:   85 LRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAG--GRSG-------NVLHEAVRGGQTALVNKLLDSGAELD 318
            LRG E   F ++ +R TP+QW EWL+APLE AAA  D  L +KL+ AG  G +G        +LH A  GG   ++  LL +GA  D
Sbjct:   14 LRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGD 100

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 6.860e-7
Identity = 36/97 (37.11%), Postives = 48/97 (49.48%), Query Frame = 1

Query:   55 MPQIIAARETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSG---------NVLHEAVRGGQTALVNKLLDSGAELD 318
            MP        L+ L   IF ++ +R TP+QW EWL+APLE AA  G+  L  KL+ AG   G          +LH A  GG   ++  L  +GA  D
Sbjct:    1 MPGYEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRD 97

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-6
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1

Query:   76 RETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAG--GRSG-------NVLHEAVRGGQTALVNKLLDSGAELDS 321
            R  L+G E  IF +++   TP+QW EWL+ PLE AAA+G+  L  KL++AG  G +G        +L  A+ GG   +++ LL +G   D+
Sbjct:    7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPDA 97

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.680e-6
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1

Query:   76 RETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSG---------NVLHEAVRGGQTALVNKLLDSGAELD----SPNFRGSYPLHYAAAGQHGSA 381
            R  L G E  IF +++   TP+QW EWL+APLE AAA G+ +L +KL+ AG   G          +L  A  GG   +V  LL +G   D    S + R S  LH +A   H +A
Sbjct:    5 RPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRS-ALHLSAVCGHEAA 118

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.410e-6
Identity = 60/210 (28.57%), Postives = 82/210 (39.05%), Query Frame = 1

Query:   76 RETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAGGRSG---------NVLHEAVRGGQTALVNKLLDSGAELD----SPNFRGSYPLHYAAAGQHGSAEVXXXXXXXXXXXXXXXXXXXXXXXXXADCGHIETGSHVAEALLTLGADIGLRYGRLKKSAMHLAARNGHTHMLRVLEKHGGDVNDEDVDGHTPL 666
            R  L G E  IF ++    TP+QW EWL+APLE AAA G+  L ++L+ AG   G          +L  A  GG   +V  LL SG   D    S + R S  LH A+                                    CGH       A+ L+  GAD+          ++H+A    H  ++ +L   G   N   + G TPL
Sbjct:    7 RALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRS-ALHVASV-----------------------------------CGH----EAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPL 176

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BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.180e-6
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1

Query:   76 RETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEILSQKLVEAG--GRSG-------NVLHEAVRGGQTALVNKLLDSGAELD 318
            R  L+G+E  I+ +++   TP QW EWL+ PLE AAA G+  L   L+EAG  G +G        ++  A  GG   +V+ LL +GA+ D
Sbjct:    7 RRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPD 96

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1390.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
D7FKL4_ECTSI	1.390e-22	35.65	Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28...	[more]
D7G137_ECTSI	5.050e-13	51.81	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]
D7G2K5_ECTSI	2.360e-11	50.00	EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]
D8LHQ7_ECTSI	2.650e-9	39.00	F-box domain and ankyrin repeat protein n=1 Tax=Ec...	[more]
D7FPN3_ECTSI	2.600e-8	43.68	Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto...	[more]
D7G2A3_ECTSI	6.860e-7	37.11	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
A0A6H5K513_9PHAE	1.240e-6	38.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LBP9_ECTSI	1.680e-6	38.26	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
A0A6H5K1F4_9PHAE	5.410e-6	28.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LRS0_ECTSI	8.180e-6	38.89	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1390	contig	L-elsbetiae_contig1390:20506..24760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	111.7
Seed ortholog evalue	6.7e-22
Seed eggNOG ortholog	2880.D7FKL4
KEGG ko	ko:K21440
Hectar predicted targeting category	other localisation
GOs	GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Exons	5
Model size	1394
Cds size	1005
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815546.6679525-UTR-L-elsbetiae_contig1390:20505..20559	1622815546.6679525-UTR-L-elsbetiae_contig1390:20505..20559	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 20506..20559 +
1691682951.8924446-UTR-L-elsbetiae_contig1390:20505..20559	1691682951.8924446-UTR-L-elsbetiae_contig1390:20505..20559	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 20506..20559 +
1622815546.7279992-UTR-L-elsbetiae_contig1390:23813..23824	1622815546.7279992-UTR-L-elsbetiae_contig1390:23813..23824	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 23814..23824 +
1691682951.945034-UTR-L-elsbetiae_contig1390:23813..23824	1691682951.945034-UTR-L-elsbetiae_contig1390:23813..23824	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 23814..23824 +
1622815546.7383237-UTR-L-elsbetiae_contig1390:24436..24760	1622815546.7383237-UTR-L-elsbetiae_contig1390:24436..24760	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 24437..24760 +
1691682951.9617565-UTR-L-elsbetiae_contig1390:24436..24760	1691682951.9617565-UTR-L-elsbetiae_contig1390:24436..24760	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig1390 24437..24760 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815546.680546-CDS-L-elsbetiae_contig1390:20559..20649	1622815546.680546-CDS-L-elsbetiae_contig1390:20559..20649	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 20560..20649 +
1691682951.9044373-CDS-L-elsbetiae_contig1390:20559..20649	1691682951.9044373-CDS-L-elsbetiae_contig1390:20559..20649	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 20560..20649 +
1622815546.693126-CDS-L-elsbetiae_contig1390:20868..21347	1622815546.693126-CDS-L-elsbetiae_contig1390:20868..21347	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 20869..21347 +
1691682951.9146206-CDS-L-elsbetiae_contig1390:20868..21347	1691682951.9146206-CDS-L-elsbetiae_contig1390:20868..21347	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 20869..21347 +
1622815546.705647-CDS-L-elsbetiae_contig1390:22608..22658	1622815546.705647-CDS-L-elsbetiae_contig1390:22608..22658	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 22609..22658 +
1691682951.9248552-CDS-L-elsbetiae_contig1390:22608..22658	1691682951.9248552-CDS-L-elsbetiae_contig1390:22608..22658	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 22609..22658 +
1622815546.7174904-CDS-L-elsbetiae_contig1390:23427..23813	1622815546.7174904-CDS-L-elsbetiae_contig1390:23427..23813	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 23428..23813 +
1691682951.9334767-CDS-L-elsbetiae_contig1390:23427..23813	1691682951.9334767-CDS-L-elsbetiae_contig1390:23427..23813	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1390 23428..23813 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1390.2933.1	prot_L-elsbetiae_contig1390.2933.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig1390 20560..23813 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig1390:20506..24760+
coding sequence from alignment at L-elsbetiae_contig1390:20506..24760+

protein sequence of mRNA_L-elsbetiae_contig1390.2933.1

>prot_L-elsbetiae_contig1390.2933.1 ID=prot_L-elsbetiae_contig1390.2933.1|Name=mRNA_L-elsbetiae_contig1390.2933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=335bp
MPQIIAARETLRGLEKRIFDIIANRCTPDQWLEWLKAPLELAAAAGDEIL
SQKLVEAGGRSGNVLHEAVRGGQTALVNKLLDSGAELDSPNFRGSYPLHY
AAAGQHGSAEVVRLLVSRGADVNVFDSKGRTPLHWAADCGHIETGSHVAE
ALLTLGADIGLRYGRLKKSAMHLAARNGHTHMLRVLEKHGGDVNDEDVDG
HTPLHYAALTGNVGCIDLLIQEWADIEAQQSNGDTPLYSAVCGRNLGVVL
ALLKHGADVNTQNWRGESPVFYAATYAGKRGAADVVNALLTWGADPLAMS
SDGKTAADVVGERVAEEDRLEDDVERVHELLERA*

mRNA from alignment at L-elsbetiae_contig1390:20506..24760+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig1390.2933.1 ID=mRNA_L-elsbetiae_contig1390.2933.1|Name=mRNA_L-elsbetiae_contig1390.2933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4255bp|location=Sequence derived from alignment at L-elsbetiae_contig1390:20506..24760+ (Laminarionema elsbetiae ELsaHSoW15)
CCGACATCAGCCACACTCTCTCGCAGACCACGCACAACTCGACTCAGTAG
CATCATGCCACAAATCATCGCCGCACGCGAGACGCTTCGGGGGTTGGAAA
AACGAATCTTCGACATAATAGCCAACCGATGCACCCCCGACCAGGTTGGT
GCATGCTGTGTCTACACGTAAGTCTCCAGACTATCTCTCTCGAAATGACC
GCTCTCCTCCAGCCGCTGCTCACTGGTGGGCGACTACTGTGTAGGTGGTA
TCATGAAGTGTCCTTGCATTTCTTACTGGTTGCCTACTAGAAATATAACT
GAGCTGTGGTCCGTCTCTTCTCCCCGCTTCCCTCCGCTCTCTCTCTCTTG
ACCCCCAAAAAAGTGGTTGGAGTGGCTGAAGGCCCCACTCGAACTCGCTG
CGGCCGCGGGAGATGAAATCCTGTCCCAAAAGCTGGTAGAAGCAGGCGGA
AGGTCGGGCAACGTCCTGCACGAGGCTGTTCGGGGCGGGCAGACGGCCCT
CGTCAACAAGCTGCTCGACTCTGGCGCCGAACTCGACTCCCCGAACTTTC
GCGGATCGTATCCTCTCCACTACGCGGCCGCGGGACAGCACGGGTCCGCG
GAGGTGGTGCGGCTACTGGTCAGCCGAGGGGCTGATGTTAATGTATTCGA
CAGCAAAGGGCGCACACCTCTTCACTGGGCGGCTGACTGTGGCCACATTG
AAACCGGCTCGCATGTCGCGGAAGCACTCTTGACACTTGGCGCGGACATC
GGCCTACGCTACGGACGGTTGAAGAAGAGTGCCATGCATCTTGCAGCCCG
CAACGGACATACCCACATGCTCAGGGTGCTCGAAAAGCACGGGTGAGTGC
ATGTCAAGGTTCTCTTCGGTTTGAGTCGGGGTAATTTATGAGGGTGATAC
GTTGAGGTAGTGAGCAAGCCAAGATCAATTTTCCTATGATCAGTCCTGCA
AGAAGCATGAACGGAGGAATCCGAGACAATTCCCCGCCTCGACGGCTGAA
TGGTAAGCCAACAGTTCACCCTAGCCGGACAGACGGCGGACCCACCTCTC
GGGGAGGATTGTCTCTCGGCCTACTTTGTTTCGCGCTCAGTGAAAAGACT
ATTGGCACACTTCTATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGCTGTTGTTGTTTGTGTGTCTTCACATACATAAAAAAAA
AGTATTCCGATATCTTGTATCCAGGGACCTCCATCTGCCCGTACTATGTA
CCTAATCCTTACACATGACGCCGTCGATTCCCGCTGGTCACAGGCGAACC
TACCCTGGAAAGGTTGACTGAAAAATAAAGGTGGACGACCCAAAGGGTCA
GCAAAACACAAACACAAAATATCAGTATCAGATACCTCCGCTCCCCTCTA
CACTCTTGTGCATGTGGAACTTGGAAATACTAAATAAATAGCCTACTTTT
CTTTTAGAAGTACTTTATACTCCAGAGTAAAACCGCCGAGTAAAATGATA
GAGTATTATACATCACCCGCATTTCCCCTCCACTACTGTTTCGGAAAAAC
ACTTTTCAAACCCAACGTCCCTGCCGCCCCCAACACTTTACGTGGCATGT
TTCCGGTGCGAAGGGGGGGTAGGACAATCGATGGAGTAAAAAAAGCATCA
ATCATGGGTGCCGACGGAGGGTACCGCAACAAGGCACGCTCTTTGTTTCC
GATGTCCCCCCGGAGATATGCCCACATACATAATAGTACAGAAATGCACC
AATATCACGTGTACCGACCGTATGCGTGTGTCTTTTTCACCCCAAAACTC
ATCGTCTAATAGTCTAAGGCATATCCGTGCTGTCTGCAAAATAGATTTTT
CCAATGCACCACTACACCTGCTGACGTGAGAATTACTAACTTGCGCCGTT
GTAGATTTCAAGACAAGGGTAACACCATGGCGTCTGGGACGAACGAGAAT
GATGCACTCAAAGCCTTGTTCCATAGGGTACTCCCGATGCCGGCGCCGGA
TCAAGTGTTTCACGGCAGGAACTACAGCCCTCTCCGCTGCTAGCCTCTTC
TATCGCCAATCCCACGCTTCTTCTTATAATGTTCATTGAAACAATAAAAA
CAGGGGTGACGTGAACGACGAGGACGTGGACGGGCACACACCTCTGCACT
ACGGTGAGGAGATCTTTGCGGCCGAAACAGTGGTCGTGCTTACTACTTGC
ACGCGCCACGTGCACCAACTCTGTGTTCTATTCGGCTCGAGCTTTTATCC
TTGCAGTGTGTGAGAGGAAAGACGGCCCAGAGGGTTGAGAGGGGACAAGC
ACACTGGGCAGAGGTTTCAGAAAAGTAGGCGTGAACCATGAAAACCCCAA
CGTCGCTCAAGACGCTTTTTTGGCCATGACCATGTATCACGAAGCAGCCG
AGGAGAGCAAGTAGGGGTTGATGGTAATGGGCGAACAGAGACAGAAGCAC
GGCATGCGACGTGGCGGCACCGTTCTCTCTTGCTTGTGGCATGCATGTAG
TTGACAAACGCACATGACCGTGTTCGAACCTACGTGTATTTTGCTGTAGG
TCTTGCATCCTCTGGACGTACCCGTCGCAAGTTTGGCGTATCTAAGGTAG
TGCGGGGGAGGAGAGAGAAGGGCATGAGAAGAGAGAGGTTTGAGTTGAAG
AACCTGACATCATCGGTGTAGGCGTCGTCAATAGTGTTTGCCTGGGGGAC
CGTCAAATATCGCTCCCCGCCCTTCGAGGGTATCGAACCTCGGTGGGCGC
GGGAGGCACCCTGCGAGGCAGCTTTCAATGCCCATGTTGTCCTGCGAAAG
CGGTCCGCACATTCTACCTCTTTTGATACGCGCCGCGGATGCTCTCGCAG
CGCTCCTACCGTATTTACATTTGCCTTCTTTACCATCCTTCCCCACGCGA
ACGCTGGCGGCTTTCCACACAGCGGCGCTCACGGGAAACGTCGGGTGCAT
CGATCTGCTGATCCAGGAGTGGGCCGACATCGAGGCCCAGCAGAGCAACG
GCGACACGCCGCTCTACTCCGCCGTCTGCGGCCGCAACCTCGGCGTCGTG
CTCGCCCTCCTCAAGCACGGGGCTGACGTCAACACCCAGAACTGGCGCGG
GGAGTCCCCCGTCTTCTACGCGGCCACCTACGCCGGCAAGAGGGGCGCCG
CAGATGTGGTGAACGCCCTCCTGACGTGGGGGGCCGACCCGCTGGCCATG
AGCAGCGACGGCAAGACGGCGGCGGACGTGGTCGGGGAGAGGGTCGCGGA
GGAGGACCGCCTGGAGGACGATGTGGAGCGCGTGCACGAGCTGCTGGAGC
GTGCTTAGGGCCCATCCCGGTGCGTCCGAGGTGCTCTCGAGCGTGCGCGA
AGAGTATGTATGCCGTGTGTGCGTGTTTGCCTCTTGTGTGCTCTTAACCT
ACTTATTTTCTGTTTTGGGGCAATCATTGTCCCTGTTGGACGCTCGTTCG
TGCGTGTCTGGAACTATGCGAGTAGGTATGGTGGTTGCGGCGGCATAGAC
AGACAGATGTGTTTTTGTGTTGGGACGGCAGTGCGCAATCTTCCTTTGTC
GGCTCGCTGGCTCCGGCCCCCTTCCCCCAGGGCAAGTTTTTGGTGTGCGT
TGTTCGACATGCTTCCCGATGTGCCATCTGTTTTTGTGCACTTTTACTTT
CCCGCGACGCGCTTTGGAAACACCATCTCTTCCGAACGCGCAACGGATTT
GTGATGTCGTTCGGATGATGCTGGTGAGCCGTTTCTTGTCCGGCGGCGGT
GACGGCGACTGTCGTGGCTCGCAGATAGGTGCCGTTTCGACAAATTTTCC
GTCGGGCGACGACTCCGTGCCCACTGCAAGAGTTCGCTTGCCAAAGGAAG
ACACCGTTTTTCACGTCTCTTCTTCGCTCGTCGACATTCCCGTCTTTTTT
GTCATCCCTGCCCTCGCCCTCCTCTTTCTAGAATATTCTTCACGGTATTC
TTCTGGGAATGCGAAGCCTCTCCGCTGCATCGGGATAGTGCTTTTTTACC
CGCACACAACCACGATGTTTAAGCTTGGTGCAGGAGGGATGTTGTGAGAG
GAAGGGGCGGAGCCAGGTGTTCGATGCCGCCGTGCCGTTGGAGACGCTGC
GGGCACTACGTAGTACTGCAGTGAACACGTACTCACATGGATTGTGAAGA
GTGTGTTGCTGGAGCCGTGCGCGGATGGCACCAGGCACCCAGCTTGTAGG
GAATTTTGATTGGCTAATTTATCCTGCTGAAGTATCTCCGGTGAAGGATG
CAGAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig1390:20506..24760+

>mRNA_L-elsbetiae_contig1390.2933.1 ID=mRNA_L-elsbetiae_contig1390.2933.1|Name=mRNA_L-elsbetiae_contig1390.2933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig1390:20506..24760+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACAAATCATCGCCGCACGCGAGACGCTTCGGGGGTTGGAAAAACG
AATCTTCGACATAATAGCCAACCGATGCACCCCCGACCAGATGCCACAAA
TCATCGCCGCACGCGAGACGCTTCGGGGGTTGGAAAAACGAATCTTCGAC
ATAATAGCCAACCGATGCACCCCCGACCAGTGGTTGGAGTGGCTGAAGGC
CCCACTCGAACTCGCTGCGGCCGCGGGAGATGAAATCCTGTCCCAAAAGC
TGGTAGAAGCAGGCGGAAGGTCGGGCAACGTCCTGCACGAGGCTGTTCGG
GGCGGGCAGACGGCCCTCGTCAACAAGCTGCTCGACTCTGGCGCCGAACT
CGACTCCCCGAACTTTCGCGGATCGTATCCTCTCCACTACGCGGCCGCGG
GACAGCACGGGTCCGCGGAGGTGGTGCGGCTACTGGTCAGCCGAGGGGCT
GATGTTAATGTATTCGACAGCAAAGGGCGCACACCTCTTCACTGGGCGGC
TGACTGTGGCCACATTGAAACCGGCTCGCATGTCGCGGAAGCACTCTTGA
CACTTGGCGCGGACATCGGCCTACGCTACGGACGGTTGAAGAAGAGTGCC
ATGCATCTTGCAGCCCGCAACGGACATACCCACATGCTCAGGGTGCTCGA
AAAGCACGGTGGTTGGAGTGGCTGAAGGCCCCACTCGAACTCGCTGCGGC
CGCGGGAGATGAAATCCTGTCCCAAAAGCTGGTAGAAGCAGGCGGAAGGT
CGGGCAACGTCCTGCACGAGGCTGTTCGGGGCGGGCAGACGGCCCTCGTC
AACAAGCTGCTCGACTCTGGCGCCGAACTCGACTCCCCGAACTTTCGCGG
ATCGTATCCTCTCCACTACGCGGCCGCGGGACAGCACGGGTCCGCGGAGG
TGGTGCGGCTACTGGTCAGCCGAGGGGCTGATGTTAATGTATTCGACAGC
AAAGGGCGCACACCTCTTCACTGGGCGGCTGACTGTGGCCACATTGAAAC
CGGCTCGCATGTCGCGGAAGCACTCTTGACACTTGGCGCGGACATCGGCC
TACGCTACGGACGGTTGAAGAAGAGTGCCATGCATCTTGCAGCCCGCAAC
GGACATACCCACATGCTCAGGGTGCTCGAAAAGCACGGGGGTGACGTGAA
CGACGAGGACGTGGACGGGCACACACCTCTGCACTACGGGGTGACGTGAA
CGACGAGGACGTGGACGGGCACACACCTCTGCACTACGCGGCGCTCACGG
GAAACGTCGGGTGCATCGATCTGCTGATCCAGGAGTGGGCCGACATCGAG
GCCCAGCAGAGCAACGGCGACACGCCGCTCTACTCCGCCGTCTGCGGCCG
CAACCTCGGCGTCGTGCTCGCCCTCCTCAAGCACGGGGCTGACGTCAACA
CCCAGAACTGGCGCGGGGAGTCCCCCGTCTTCTACGCGGCCACCTACGCC
GGCAAGAGGGGCGCCGCAGATGTGGTGAACGCCCTCCTGACGTGGGGGGC
CGACCCGCTGGCCATGAGCAGCGACGGCAAGACGGCGGCGGACGTGGTCG
GGGAGAGGGTCGCGGAGGAGGACCGCCTGGAGGACGATGTGGAGCGCGTG
CACGAGCTGCTGGAGCGTGCTTAGCGGCGCTCACGGGAAACGTCGGGTGC
ATCGATCTGCTGATCCAGGAGTGGGCCGACATCGAGGCCCAGCAGAGCAA
CGGCGACACGCCGCTCTACTCCGCCGTCTGCGGCCGCAACCTCGGCGTCG
TGCTCGCCCTCCTCAAGCACGGGGCTGACGTCAACACCCAGAACTGGCGC
GGGGAGTCCCCCGTCTTCTACGCGGCCACCTACGCCGGCAAGAGGGGCGC
CGCAGATGTGGTGAACGCCCTCCTGACGTGGGGGGCCGACCCGCTGGCCA
TGAGCAGCGACGGCAAGACGGCGGCGGACGTGGTCGGGGAGAGGGTCGCG
GAGGAGGACCGCCTGGAGGACGATGTGGAGCGCGTGCACGAGCTGCTGGA
GCGTGCTTAG