mRNA_L-elsbetiae_contig13890.2929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13890.2929.1
Unique NamemRNA_L-elsbetiae_contig13890.2929.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13890.2929.1 vs. uniprot
Match: D7FVG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.800e-12
Identity = 73/181 (40.33%), Postives = 88/181 (48.62%), Query Frame = 3 
Query:  192 MFHVQSAASSGAPS-LIPHCWDAYP----------VRSEGAXXXXXXXXXXXARLLRCFLSLPSSSPLSLSPSCSANEGRGTRRRRGRHANNKRMVHTVGSRVQVTSNSXXXXXXXXXXXXXXXXASSPEVLPEWLGRLGLDKEEEDNLVAAFAALPXXXXXXXADAKLMHAARDLVVSMK 701
            MF VQS  SSG P  LI + WDA P          +R                RLLRCFLSLPSSS LS  PS + ++ R +   R R A  +  VH   +  QV+S+                 A +PE  P W+GRLGLD+              XXXXXXXADAKL+ A R+LVVSMK
Sbjct:    1 MFAVQSVPSSGPPRPLIANFWDACPFLGARGGAEGIRGGIGDGRHGSSIGGSTRLLRCFLSLPSSS-LS-PPSAAVDDSRNSXXXRSRSAKERHPVHGAVACQQVSSSGPTTASAA---------APAPETPPGWIGRLGLDEXXXXXXXXXXXXXXXXXXXXXADAKLVQATRELVVSMK 170
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BLAST of mRNA_L-elsbetiae_contig13890.2929.1 vs. uniprot
Match: A0A6H5JCT3_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.920e-10
Identity = 69/182 (37.91%), Postives = 86/182 (47.25%), Query Frame = 3 
Query:  192 MFHVQSAASS-GAPSLIPHCWDAYP----------VRSEGAXXXXXXXXXXXARLLRCFLSLPSSSPLSLSPSCSANEGRGTRRRRGRHANNKRMVHTVGSRVQVTSNSXXXXXXXXXXXXXXXXASSPEVLPEWLGRLGLDKEEEDNLVAAFAALPXXXXXXXADAKLMHAARDLVVSMKK 704
            MF +QSA +S     LI + WDA P          +R                RLLRCFLSLPSSS LS  PS + ++ R       R A  +  VH   +  QV+S+S                A +PE LP W+GRLGLD+              XXXXX  ADAKL+ A R+LVVSMK+
Sbjct:    1 MFALQSAPTSCPLRPLIANFWDACPFLGERGGAEGIRGGIGDGRHGSSIGGSTRLLRCFLSLPSSS-LS-PPSAAVDDSRNXXXXXSRSAEERHPVHGAQACQQVSSSSPTTASAT---------APAPETLPGWIGRLGLDEXXXXXXXXXXXXXXXXXXXSAADAKLVQATRELVVSMKR 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13890.2929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVG5_ECTSI2.800e-1240.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCT3_9PHAE1.920e-1037.91Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13890contigL-elsbetiae_contig13890:2882..4323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog2880.D7FVG5
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_001000.1
Exons2
Model size813
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13890.2929.1prot_L-elsbetiae_contig13890.2929.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13890 3703..4323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.2049046-UTR-L-elsbetiae_contig13890:2881..29521622815546.2049046-UTR-L-elsbetiae_contig13890:2881..2952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13890 2882..2952 +
1691682951.623359-UTR-L-elsbetiae_contig13890:2881..29521691682951.623359-UTR-L-elsbetiae_contig13890:2881..2952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13890 2882..2952 +
1622815546.2194674-UTR-L-elsbetiae_contig13890:3582..37021622815546.2194674-UTR-L-elsbetiae_contig13890:3582..3702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13890 3583..3702 +
1691682951.6347427-UTR-L-elsbetiae_contig13890:3582..37021691682951.6347427-UTR-L-elsbetiae_contig13890:3582..3702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13890 3583..3702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.232815-CDS-L-elsbetiae_contig13890:3702..43231622815546.232815-CDS-L-elsbetiae_contig13890:3702..4323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13890 3703..4323 +
1691682951.6436293-CDS-L-elsbetiae_contig13890:3702..43231691682951.6436293-CDS-L-elsbetiae_contig13890:3702..4323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13890 3703..4323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13890.2929.1

>prot_L-elsbetiae_contig13890.2929.1 ID=prot_L-elsbetiae_contig13890.2929.1|Name=mRNA_L-elsbetiae_contig13890.2929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MFHVQSAASSGAPSLIPHCWDAYPVRSEGAGAGGGGGGASSARLLRCFLS
LPSSSPLSLSPSCSANEGRGTRRRRGRHANNKRMVHTVGSRVQVTSNSSS
GGGSGGAALAAAATASSPEVLPEWLGRLGLDKEEEDNLVAAFAALPEPPP
PAAADAKLMHAARDLVVSMKKQERAVTKAKAKAGSPNGGIAVEAEKKIRT
REQANKA
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mRNA from alignment at L-elsbetiae_contig13890:2882..4323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13890.2929.1 ID=mRNA_L-elsbetiae_contig13890.2929.1|Name=mRNA_L-elsbetiae_contig13890.2929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1442bp|location=Sequence derived from alignment at L-elsbetiae_contig13890:2882..4323+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGACAGTTTGCGGAGAGACCACAGCCAGTTCAGCAGCGGTGACAGCAG
TTCTTTGTGCAGTGATAGACGGTGAGTGGTACACATGTGTGTATGAGGTT
TTGTTCTCCTGTTTTCCCCTGAATCAGCAAGCAGAAAACATGAGTACAGG
GCTACCCTTGCTTCCTGGGGCAAGGTGGTGTGACTAGGTGGACAACTCGG
CTCGTGTAAGGGGGGACGACCTTGAGTTTAGCACGATCAGCGCGGCTCCT
AGTAGGCATGATGCGTGCAGAAGTCAGCACCAAATATGCTAAAAGCACTC
ATTATGTGCCTCGTGTCTAGTCTGAGCGATGTAAGGCAAATGAAGGAGTG
TCACCCAAGATGTCCACTTTTGACGCATGTAGAGCATGTAAGCAACCTGA
AGGCACTGGAGGAGTTACTGACACCTTGTGCTCGGCGAACTTACTGACTC
CTGGGCGGAAGAATGAGATAAGCGTGCAGTCTACACCCCGAGAGAGTCCG
CTTTTCGTGAAGCCGGGGCATCCGGCGGCTTAGTTGTAGTTGAGTCCGTC
TACTGGTTGCTCGCATGTTTTGTTGTATCCTCGCGTAATGCTGCAGCAGG
CGTCCCCATTCCTGCGCAAACTTTACGCCTGCCTCTCCGTCCCGTCCTCC
CCCCGCTTTTGGCCGCTCTCTCGTGCGCACCTCCCGCCCCCGTTCCTCCA
GCAAGCTTACCTACAAGCGTAGTTTTTGTAATCCTCGGCCGGCGGCAACA
GAGCGCGGGGGCGCGGGGAAAGGCTGTACACACAACAAACATAGATAGAT
AGCTACAGGCAGGGGCGTCGGATGTTTCACGTGCAGTCCGCGGCAAGCAG
CGGCGCGCCGTCGTTGATACCACACTGTTGGGATGCGTATCCAGTACGAA
GCGAAGGGGCAGGGGCCGGCGGCGGCGGCGGCGGCGCCAGCAGCGCGCGA
TTGCTTCGCTGCTTCCTTTCGTTGCCGTCTTCGTCGCCGCTGTCTTTGTC
CCCGTCGTGCTCGGCGAACGAGGGTCGAGGTACTCGACGCCGTCGGGGCC
GGCACGCCAATAATAAACGGATGGTCCACACCGTCGGGTCGCGCGTGCAG
GTGACCAGCAATAGCAGCAGCGGCGGCGGCAGCGGTGGTGCCGCCCTCGC
AGCCGCAGCCACGGCGTCCTCGCCGGAGGTCCTCCCGGAGTGGCTGGGAA
GGCTGGGGCTCGACAAAGAGGAGGAGGATAACCTGGTCGCGGCCTTCGCT
GCTCTGCCGGAGCCGCCACCACCGGCCGCCGCCGACGCGAAGCTGATGCA
CGCGGCGAGAGATCTGGTTGTGTCCATGAAGAAGCAGGAGCGGGCGGTGA
CGAAGGCGAAGGCGAAGGCGGGTTCGCCGAACGGGGGGATAGCAGTAGAG
GCCGAGAAGAAGATACGCACGAGGGAACAAGCGAATAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13890:2882..4323+

>mRNA_L-elsbetiae_contig13890.2929.1 ID=mRNA_L-elsbetiae_contig13890.2929.1|Name=mRNA_L-elsbetiae_contig13890.2929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig13890:2882..4323+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCACGTGCAGTCCGCGGCAAGCAGCGGCGCGCCGTCGTTGATACC
ACACTGTTGGGATGCGTATCCAGTACGAAGCGAAGGGGCAGGGGCCGGCG
GCGGCGGCGGCGGCGCCAGCAGCGCGCGATTGCTTCGCTGCTTCCTTTCG
TTGCCGTCTTCGTCGCCGCTGTCTTTGTCCCCGTCGTGCTCGGCGAACGA
GGGTCGAGGTACTCGACGCCGTCGGGGCCGGCACGCCAATAATAAACGGA
TGGTCCACACCGTCGGGTCGCGCGTGCAGGTGACCAGCAATAGCAGCAGC
GGCGGCGGCAGCGGTGGTGCCGCCCTCGCAGCCGCAGCCACGGCGTCCTC
GCCGGAGGTCCTCCCGGAGTGGCTGGGAAGGCTGGGGCTCGACAAAGAGG
AGGAGGATAACCTGGTCGCGGCCTTCGCTGCTCTGCCGGAGCCGCCACCA
CCGGCCGCCGCCGACGCGAAGCTGATGCACGCGGCGAGAGATCTGGTTGT
GTCCATGAAGAAGCAGGAGCGGGCGGTGACGAAGGCGAAGGCGAAGGCGG
GTTCGCCGAACGGGGGGATAGCAGTAGAGGCCGAGAAGAAGATACGCACG
AGGGAACAAGCGAATAAGGCGATGTTTCACGTGCAGTCCGCGGCAAGCAG
CGGCGCGCCGTCGTTGATACCACACTGTTGGGATGCGTATCCAGTACGAA
GCGAAGGGGCAGGGGCCGGCGGCGGCGGCGGCGGCGCCAGCAGCGCGCGA
TTGCTTCGCTGCTTCCTTTCGTTGCCGTCTTCGTCGCCGCTGTCTTTGTC
CCCGTCGTGCTCGGCGAACGAGGGTCGAGGTACTCGACGCCGTCGGGGCC
GGCACGCCAATAATAAACGGATGGTCCACACCGTCGGGTCGCGCGTGCAG
GTGACCAGCAATAGCAGCAGCGGCGGCGGCAGCGGTGGTGCCGCCCTCGC
AGCCGCAGCCACGGCGTCCTCGCCGGAGGTCCTCCCGGAGTGGCTGGGAA
GGCTGGGGCTCGACAAAGAGGAGGAGGATAACCTGGTCGCGGCCTTCGCT
GCTCTGCCGGAGCCGCCACCACCGGCCGCCGCCGACGCGAAGCTGATGCA
CGCGGCGAGAGATCTGGTTGTGTCCATGAAGAAGCAGGAGCGGGCGGTGA
CGAAGGCGAAGGCGAAGGCGGGTTCGCCGAACGGGGGGATAGCAGTAGAG
GCCGAGAAGAAGATACGCACGAGGGAACAAGCGAATAAGGCG
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