mRNA_L-elsbetiae_contig13890.2928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13890.2928.1
Unique NamemRNA_L-elsbetiae_contig13890.2928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: D7FVG7_ECTSI (Protochlorophyllide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.640e-30
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKAS 198
            +A KDSKLCNV FT EAQRRLSAR+S VKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATN+IK +
Sbjct:  219 KAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNLIKVA 284          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S1VW05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VW05_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.760e-22
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNVFFTRE QRRL+  KS + V+CF+PGLI SSGLFR Q  +F+K+FD AATNV+K
Sbjct:   15 KAYKDSKLCNVFFTRELQRRLAGAKSEITVNCFTPGLIVSSGLFREQPKLFTKVFDVAATNVLK 78          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A6U3UQ39_9STRA (Protochlorophyllide reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UQ39_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.060e-22
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNV FTRE QRRL    +G+KV+CFSPGLI  +GLFR+QNPIF+K+FD AATN++K
Sbjct:  144 KAYKDSKLCNVLFTRELQRRLDKDGTGIKVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLK 207          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S4M8I2_9STRA (Protochlorophyllide reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8I2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.250e-21
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNV FTRE QRRL A   G+K +CF+PGLI  +GLFR+QNP+F+K+FDFAAT+++K
Sbjct:  292 KAYKDSKLCNVLFTRELQRRLDASGVGIKANCFNPGLIVGTGLFRDQNPLFTKVFDFAATDLLK 355          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S2HIS0_9STRA (Protochlorophyllide reductase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIS0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.410e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNV FTRE QRR+    +G+ V+CFSPGLI  +GLFR+QNPIF+K+FD AATN++K
Sbjct:  296 KAYKDSKLCNVLFTRELQRRMDKAGTGINVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLK 359          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S1CZV4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZV4_CYCTE)

HSP 1 Score: 87.0 bits (214), Expect = 5.200e-20
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKS--GVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNVFFTRE QRRL A  S  GV  +CF+PGLI S+GLFR+Q+ IF+KIFD AAT+++K
Sbjct:   30 KAYKDSKLCNVFFTRELQRRLEASPSTKGVTANCFNPGLIVSTGLFRDQSKIFTKIFDVAATDLLK 95          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S2R3H0_9STRA (Protochlorophyllide reductase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3H0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.760e-20
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAAT 180
            +A KDSKLCNV FTRE Q RL A KS V V+CFSPGLI S+GLFR+QN IF+K+FDFAAT
Sbjct:  298 KAYKDSKLCNVLFTRELQHRLEAAKSRVTVNCFSPGLIVSTGLFRDQNQIFTKLFDFAAT 357          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S3LBS2_9STRA (Protochlorophyllide reductase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBS2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.970e-20
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKS--GVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 192
            +A KDSKLCNV FTRE QRRL A+ +  G+  +CF+PGLI S+GLFR+QNP+F+K+FDFAAT+++K
Sbjct:  262 KAYKDSKLCNVLFTRELQRRLEAQDATKGITANCFNPGLIVSTGLFRDQNPLFTKVFDFAATDLLK 327          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A836C919_9STRA (Protochlorophyllide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C919_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.160e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVI 189
            +A KDSKLCNV FTRE  RRL+ + S V V+CFSPGLIP+SGLFR+QNP+F K+F FAA +V+
Sbjct:  233 KAYKDSKLCNVLFTRELNRRLTKKDSKVHVNCFSPGLIPTSGLFRSQNPLFVKVFGFAAGSVL 295          
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Match: A0A7S2XW84_9STRA (Protochlorophyllide reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW84_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.400e-19
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAAT 180
            +A KDSKLCNV FT E QRRL A  S V V+CFSPGLIPS+GLFRNQNP+F+K FD A +
Sbjct:  281 KAYKDSKLCNVLFTEECQRRLDANGSKVTVNCFSPGLIPSTGLFRNQNPLFTKAFDIATS 340          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13890.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG7_ECTSI5.640e-3086.36Protochlorophyllide reductase n=1 Tax=Ectocarpus s... [more]
A0A7S1VW05_9STRA1.760e-2268.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U3UQ39_9STRA2.060e-2268.75Protochlorophyllide reductase n=2 Tax=Ditylum brig... [more]
A0A7S4M8I2_9STRA5.250e-2165.63Protochlorophyllide reductase n=1 Tax=Odontella au... [more]
A0A7S2HIS0_9STRA7.410e-2165.63Protochlorophyllide reductase n=1 Tax=Helicotheca ... [more]
A0A7S1CZV4_CYCTE5.200e-2066.67Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2R3H0_9STRA7.760e-2073.33Protochlorophyllide reductase (Fragment) n=1 Tax=E... [more]
A0A7S3LBS2_9STRA7.970e-2063.64Protochlorophyllide reductase n=1 Tax=Amphora coff... [more]
A0A836C919_9STRA1.160e-1966.67Protochlorophyllide reductase n=1 Tax=Tribonema mi... [more]
A0A7S2XW84_9STRA2.400e-1970.00Protochlorophyllide reductase n=1 Tax=Fibrocapsa j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13890contigL-elsbetiae_contig13890:255..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D7FVG7
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.3.1.33
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.2745738-CDS-L-elsbetiae_contig13890:254..4611622815546.2745738-CDS-L-elsbetiae_contig13890:254..461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13890 255..461 +
1691682951.65268-CDS-L-elsbetiae_contig13890:254..4611691682951.65268-CDS-L-elsbetiae_contig13890:254..461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13890 255..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13890.2928.1prot_L-elsbetiae_contig13890.2928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13890 255..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13890.2928.1

>prot_L-elsbetiae_contig13890.2928.1 ID=prot_L-elsbetiae_contig13890.2928.1|Name=mRNA_L-elsbetiae_contig13890.2928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
RADKDSKLCNVFFTREAQRRLSARKSGVKVDCFSPGLIPSSGLFRNQNPI
FSKIFDFAATNVIKASRV*
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mRNA from alignment at L-elsbetiae_contig13890:255..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13890.2928.1 ID=mRNA_L-elsbetiae_contig13890.2928.1|Name=mRNA_L-elsbetiae_contig13890.2928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig13890:255..461+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGACAAAGACTCGAAGCTGTGCAACGTGTTCTTCACGCGGGAGGC TCAGCGGCGGCTGTCCGCCAGGAAGTCGGGCGTGAAGGTGGACTGTTTCT CTCCGGGGCTGATCCCCAGCAGCGGCCTCTTCCGGAACCAGAACCCGATC TTCTCCAAGATCTTCGACTTTGCGGCCACGAACGTCATCAAGGCGAGCCG AGTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13890:255..461+

>mRNA_L-elsbetiae_contig13890.2928.1 ID=mRNA_L-elsbetiae_contig13890.2928.1|Name=mRNA_L-elsbetiae_contig13890.2928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig13890:255..461+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGACAAAGACTCGAAGCTGTGCAACGTGTTCTTCACGCGGGAGGC
TCAGCGGCGGCTGTCCGCCAGGAAGTCGGGCGTGAAGGTGGACTGTTTCT
CTCCGGGGCTGATCCCCAGCAGCGGCCTCTTCCGGAACCAGAACCCGATC
TTCTCCAAGATCTTCGACTTTGCGGCCACGAACGTCATCAAGGCGAGCCG
AGTCTAGCGCGCAGACAAAGACTCGAAGCTGTGCAACGTGTTCTTCACGC
GGGAGGCTCAGCGGCGGCTGTCCGCCAGGAAGTCGGGCGTGAAGGTGGAC
TGTTTCTCTCCGGGGCTGATCCCCAGCAGCGGCCTCTTCCGGAACCAGAA
CCCGATCTTCTCCAAGATCTTCGACTTTGCGGCCACGAACGTCATCAAGG
CGAGCCGAGTCTAG
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