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Homology
BLAST of mRNA_L-elsbetiae_contig1389.2924.1 vs. uniprot
Match: D8LAV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV7_ECTSI) HSP 1 Score: 177 bits (449), Expect = 8.590e-45 Identity = 163/364 (44.78%), Postives = 189/364 (51.92%), Query Frame = 3
Query: 114 LPLSPSSTAAHFSN----THFDRHGSG----AREGIAPHSHAARGAG----------SAAHAPPAAGLRVPAAA-SRARKPVAGRREVHERRGCCGVDAIEASPSPTSALKKSENPALFDTSAXXXXXXXXXXXXKSEATSAVGGMPKRSRPP---VAELALRPPARCDDEVSEEFEAKARRRSATRAALAAGPFSTAGGGXXXXXXXXGR---IFDSGGSGDGRWRKLHARGGGGEDGPPRLKLSVETA----GDGDEVLLSPSDHHQGAPRELEGGAPPARSYCSSPVSLSSGSERTPG------LRDGRDRNDQLVSSVDSAWSMGSIDETAARELRNTREEDRTSGADPVARVLLCQSDD 1100
LPLSPS+TAA N + FDR G+G A ++ + AR + AH+P A LRVP + ARK +AG R RG +D E SPSP + SE A F +S PKR R P A L L PP CD+ VS EFEAKARRRSA R A A + G + DSGGS GRWRKL ARGGGG GPPRLKLSVE+A G+ DEVLLSP H P +L PA +C+SP+ + S R+ G LR G + N L SSVDSAWSMGSIDETAARE NTR DR SG DPVAR+LL QSDD
Sbjct: 124 LPLSPSATAARSMNALGHSTFDR-GTGFSLSAARRVSVRAVRARXXXXXXXXXXXXFTHAHSP-AVVLRVPQGRPTSARKLMAGGRREALERGDLELDVAEVSPSPKRSSNDSERKAPF--------------------SSCESETPKRGRSPSVAAAGLTLLPPISCDEAVSWEFEAKARRRSAVRNAKTAAELFDSNSSTCCVTPAGGDGDGVGDSGGSVGGRWRKLQARGGGGSAGPPRLKLSVESAVAAAGEDDEVLLSPCCH---GPVDL-----PA--FCASPILVPSSGVRSGGGGGGRPLRGGAEEN-VLTSSVDSAWSMGSIDETAAREPSNTRNNDRASGGDPVARMLLSQSDD 454
BLAST of mRNA_L-elsbetiae_contig1389.2924.1 vs. uniprot
Match: A0A6H5JPD1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 9.020e-42 Identity = 137/306 (44.77%), Postives = 158/306 (51.63%), Query Frame = 3
Query: 237 AHAPPAAGLRVPAAASRARKPVAG-RREVHERRGCCGVDAIEASPSPTSALKKSENPALFDTSAXXXXXXXXXXXXKSEATSAVGGMPKRSRPP---VAELALRPPARCDDEVSEEFEAKARRRSATRAALAAGPFSTAGGGXXXXXXXXGR-IFDSGGSGDGRWRKLHARGGGGEDGPPRLKLSVETA----GDGDEVLLSPSDHHQGAPRELEGGAPPARSYCSSPVSLSSGSERTPG---------LRDGRDRNDQLVSSVDSAWSMGSIDETAARELRNTREEDRTSGADPVARVLLCQSDD 1100
AH+PP P + ARK +AG RRE HER G +D E SPSP SE A F +S PKR R P A L PP CD+ +S EFEA+ARRRSA R + A + G + SGGS DGRWRKL ARGGGG GPPRLKLSVE+A G+ DEVLLSP H G ++C+SPV ++S R LR G + D L SSVDSAWS+GSIDETAARE TR DR SG+DPVAR LLCQ DD
Sbjct: 180 AHSPPVVVRVPPGRPTVARKLMAGGRREAHER-GDLELDLAEVSPSPKRGSNDSERKASF--------------------SSCGSETPKRGRSPSVVAAGLTPLPPVSCDEALSWEFEARARRRSAVRKSKTATELLDSNSSTCCVTPAGGDDVSHSGGSMDGRWRKLQARGGGGPAGPPRLKLSVESAVVAAGEDDEVLLSPCCH----------GPVDVPAFCTSPVLVASSGVRNGXXXXXXXXRPLRGGPEE-DVLTSSVDSAWSIGSIDETAAREPSCTRHNDRASGSDPVARTLLCQPDD 453
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-27_006250.1 |
Exons | 4 |
Model size | 1603 |
Cds size | 972 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815545.8976352-UTR-L-elsbetiae_contig1389:5205..5345 | 1622815545.8976352-UTR-L-elsbetiae_contig1389:5205..5345 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 5206..5345 - |
1691682951.4589033-UTR-L-elsbetiae_contig1389:5205..5345 | 1691682951.4589033-UTR-L-elsbetiae_contig1389:5205..5345 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 5206..5345 - |
1622815545.9453027-UTR-L-elsbetiae_contig1389:7846..7978 | 1622815545.9453027-UTR-L-elsbetiae_contig1389:7846..7978 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 7847..7978 - |
1691682951.4969966-UTR-L-elsbetiae_contig1389:7846..7978 | 1691682951.4969966-UTR-L-elsbetiae_contig1389:7846..7978 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 7847..7978 - |
1622815545.959967-UTR-L-elsbetiae_contig1389:8876..9235 | 1622815545.959967-UTR-L-elsbetiae_contig1389:8876..9235 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 8877..9235 - |
1691682951.5066078-UTR-L-elsbetiae_contig1389:8876..9235 | 1691682951.5066078-UTR-L-elsbetiae_contig1389:8876..9235 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1389 8877..9235 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815545.909922-CDS-L-elsbetiae_contig1389:5345..5786 | 1622815545.909922-CDS-L-elsbetiae_contig1389:5345..5786 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 5346..5786 - |
1691682951.4681277-CDS-L-elsbetiae_contig1389:5345..5786 | 1691682951.4681277-CDS-L-elsbetiae_contig1389:5345..5786 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 5346..5786 - |
1622815545.9232464-CDS-L-elsbetiae_contig1389:6413..6857 | 1622815545.9232464-CDS-L-elsbetiae_contig1389:6413..6857 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 6414..6857 - |
1691682951.4762812-CDS-L-elsbetiae_contig1389:6413..6857 | 1691682951.4762812-CDS-L-elsbetiae_contig1389:6413..6857 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 6414..6857 - |
1622815545.934818-CDS-L-elsbetiae_contig1389:7759..7846 | 1622815545.934818-CDS-L-elsbetiae_contig1389:7759..7846 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 7760..7846 - |
1691682951.4845037-CDS-L-elsbetiae_contig1389:7759..7846 | 1691682951.4845037-CDS-L-elsbetiae_contig1389:7759..7846 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1389 7760..7846 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1389.2924.1 >prot_L-elsbetiae_contig1389.2924.1 ID=prot_L-elsbetiae_contig1389.2924.1|Name=mRNA_L-elsbetiae_contig1389.2924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=324bp
MPKRSRPPVAELALRPPARCDDEVSEEFEAKARRRSATRAALAAGPFSTA GGGGSGGSGGSGRIFDSGGSGDGRWRKLHARGGGGEDGPPRLKLSVETAG DGDEVLLSPSDHHQGAPRELEGGAPPARSYCSSPVSLSSGSERTPGLRDG RDRNDQLVSSVDSAWSMGSIDETAARELRNTREEDRTSGADPVARVLLCQ SDDCGINAAVLTAAAAEGEDGGENNNDGVRSSAGGDGGSPSPPAAVGDAA GVDASSPRAFEAAGGGGGGAAAASVFGWPAAKGGRFDAPRSGLFSLGSRS AGIGDAGAVPRTRLFKPVACPPP* back to topmRNA from alignment at L-elsbetiae_contig1389:5206..9235- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1389.2924.1 ID=mRNA_L-elsbetiae_contig1389.2924.1|Name=mRNA_L-elsbetiae_contig1389.2924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4030bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:5206..9235- (Laminarionema elsbetiae ELsaHSoW15) AGCAGCAGCAGCCCGGCCTCGCGAATGCGTCCGGCCTCTCGCCGGCGCTG
CGCTCGATTTTCTTCGCCGGCGCCGGTGCCGGTGCCGGTGTCAGTGCCGG
TGCCACCGGACAGTTGCCGCTATCGCCGTCCTCCACCGCGGCGCACTTTT
CCAACACCCACTTCGACCGCCACGGCAGCGGCGCGAGGGAGGGGATAGCC
CCGCACTCGCACGCCGCCAGGGGCGCTGGCTCTGCTGCGCACGCTCCTCC
TGCGGCGGGGCTGCGCGTGCCTGCTGCCGCGAGCAGGGCGAGGAAGCCGG
TCGCCGGCAGGCGGGAGGTGCACGAGCGCAGGGGCTGCTGTGGGGTGGAT
GCTATTGAGGTGAGATTTTTTTGTTTATTTCGGGTGCGTGTGTTGTGGGC
GGTGCGCGTATTGTATAGTGTAACAGAACAAGTGCCGGAGCATTCAGATC
GGGTTTCTTTATCAGTCGTTGGTTGCCACCGAGGCAAGGAAGGGTGTGCC
TTTCCAGTTCCAAGCACGCCTTCGGGACGACTATCGGCGGCGCAACAGCC
AGCGTTTGTGATGTTTATTGTTTATCGGGAGGTCTGGAAGGTTTCATCCG
TCCACACATCGATTCCCTCAACAGTATAGACAGCAAGGATTTTTTTCTTC
TTCTTAAGGGTGCTCACACGTTTAGCAGCGGTCGGACGAGGACCCGAGCA
AATTTAGAAGGAGCGCACCATTTCGGTCGCTGCGTAATTACCGCAGTGGT
ATTTGATTTATTTTTACCAGTGTGCTGTGTCTACATATGTACCCTGGGCA
TAAGGTACAGTGATAACTCCCCTGCTAGTGTTAGCAGTAAGGCTTTTGAG
AGTGACAACAATTTGCTGGCAGGTCGTGTCTTGGGAGACGGCCTAGAGGC
GGGTGCTGCAAGCTTTTTTGGTGACGCATGCCCGTCGTGTGTTTCGCGTT
GCTTTACCAGCGGCCAGTGCTGCCCCCCCCCCCCCCCCCCGCGTGCTCAA
TACTCCACCCCCGCCATATTGCGGTCATTTTTTTTTTATGAATTATGACG
GCTGTTTTTTTGGGGGCAGCGCCCGCCCTCGCGATTACTGCTGGTGTATT
GTAGATAAAGCACGCTCCCTTCTGCTCCCCTGCTGCAGTTATAAGGCCCT
AAAATATGCACTCGAACGGAAATGTTAAGTCGCCTGCGTGTTGCCGCCGC
CGCCGCCGCCACCCCCACCTATCCCCTGCTTTCATTTCTTCGTCATTCCC
AACACAGGCGTCACCCTCGCCGACTAGCGCGTTGAAGAAATCGGAGAATC
CCGCGCTCTTCGACACCTCTGCTGCTGCTGCGGCGGCGGCTGCTGCTGCT
GCTGCTGCCAAATCGGAGGCAACCTCGGCGGTGGGTGGCATGCCCAAGCG
CAGCCGGCCTCCCGTGGCTGAGCTGGCGCTGCGCCCCCCCGCAAGATGCG
ACGACGAGGTGTCGGAGGAGTTCGAGGTGCGTTAGTTACGCAGAAATATC
TCTCTTGGTTGGGACTCGCGGCCTGCCTCTCTTCTCGTGCTGTGTATGGA
TTTCACATTCCTCTCATCTTTTAGCCGATTTATTTCGTGTTTTTGTGCGC
CCGGGCCCCGAAAATCGAAAACCCAGAGACTCACAACACCTTCAAGCACA
CCGGTTATCTCGTGTGTGTCCTCCCCGAACCATGCTCCCGCACGGGGTGC
AATGAGGTGATGGGTCGGTTTGGCGTCGGGTTGGCGATGCTCCTGTGTTA
ACACGCCACTGGCTGCGTGAGCTACCTACCGCACACAGCAGTAGGACTTA
CTACTGCGGTTGCCGTGCTTTGTACGTCTTCTGTGCTGCGTCTTTGTTTT
CAGATGCCCTACGAAACGTCAGCCGTCTACATGCGTCCCAACCCGTGAAA
ATGTCGTTCCGGGGGGGGGACTGTTGTTTTTAACCAATGTCTACAAGTGT
CAGCGGTCTATGTCCAGCCTGTGAAAACGTCGTTTCGGGGGACTGTTATT
TTTAACCAATGTATGCAAGTGTCAGCGGTCTACATACGTCCAACCTGCGA
AAAAGTCGTTCCGGGGGGGCTGCTGTTGTAGACACAACTAACCCTCTTGC
TTGCACGATATTCATGTAAATAACCATGACATTTGTGGTCGAGCTTCACG
GAAGGCAGGACCTCCGATCAATGTGCGAACCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCTCCTGCGGTTTTTATTCCCCCCTCATCTGCATTCCTCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTCCGCTTTTTTTTCCCCCCCCCCC
CCCTCTTCCCCCCCCCCCCCCCCCCCCCCCTCTCCTGCATGTATTCTCCG
CGCTTCCACTACTGTTAAATACCGGCAGGCTAAGGCCAGACGCCGATCCG
CCACCCGCGCTGCGCTCGCCGCCGGTCCTTTTTCGACCGCCGGCGGCGGC
GGCAGCGGCGGCAGCGGCGGAAGCGGAAGGATCTTCGACAGCGGCGGCAG
CGGCGATGGGCGGTGGCGGAAGCTCCACGCCCGCGGCGGCGGGGGGGAAG
ACGGCCCCCCCCGGTTGAAGCTCTCGGTGGAGACGGCGGGGGACGGCGAC
GAGGTTTTGCTGTCACCCTCTGACCACCACCAGGGGGCACCGCGGGAACT
GGAAGGCGGCGCCCCCCCCGCGCGGAGCTACTGCTCGTCGCCGGTCTCGC
TCTCGTCGGGGTCAGAGAGAACGCCGGGTCTCCGCGACGGCCGCGACAGG
AACGACCAGCTGGTTTCTTCTGTGGACAGCGCGTGGTCCATGGGATCGAT
CGATGAGACCGCCGCGAGAGAGGTGTGAAAGGGGGGGAACGAAGTCAACG
AACGGCTTGACTTGCTTCTTACGTCGCGTTCGGCTTTCGATTTTATTTGG
TGTTTTGAGGGAAGAGGACGTCGTCTCTCGGAGGAGAGAGGGGGAAGTTA
TATTCGTTTTTTGGTGTGGCGTGATCGTGCAGGGCAGGAGAGGCAGGCAC
CCTACAAGCTTGGTGGAGAAGTCTACAGCAGAGCATCGGAGCTTGGGGAA
TTGGACGCCGCAGTAGGAGAGTGTGATTCAGAAGGAGCCCACAGCAGTCG
CGGGCTCTTTCCGGGCAGTCCATCCAATGATCAAATGACACCGATTACTA
CATACCACCACTCTTTTAGGGTGCTCTCGGTCGTGAGCAAACCAGCCTCC
CCTACCCCGTATACATGCACATATTTTTGACGGCGGCTAATACTAATGTG
TACAAAGGTCAGCAGTCTACGTCCAGTCTGCGAAAAAGTCGTTCCTCTTT
TGAAGTGTTTCAGCTGTTCCGGGCCGGCCGTTTATCATGACTTACCCTGC
TTTGCCTGCGTGCCTGCCTGCGTGCCTGCGTGCCTGCCTGCGTGCCTGCC
TGGTGCTGCTATTTCTTGTCCTTCTTTTTTCACGATTTCCGGCCAACAGC
TCCGCAACACGAGGGAGGAGGATCGCACCTCCGGCGCTGACCCGGTGGCG
CGGGTGCTCCTTTGCCAGTCGGACGACTGCGGCATCAACGCCGCCGTCCT
CACCGCCGCCGCTGCGGAAGGAGAGGACGGCGGAGAGAACAACAACGATG
GTGTCCGGTCATCCGCCGGAGGGGACGGTGGCTCTCCATCCCCTCCCGCC
GCCGTCGGCGACGCCGCCGGTGTTGACGCCTCTTCTCCGCGGGCGTTCGA
GGCGGCCGGCGGTGGCGGCGGTGGCGCCGCCGCGGCGAGCGTTTTCGGCT
GGCCGGCGGCGAAGGGGGGCCGTTTCGATGCACCCCGTTCCGGCTTGTTC
AGCCTCGGCTCCCGGAGCGCAGGGATCGGGGACGCTGGCGCCGTTCCGCG
TACCCGCCTCTTCAAGCCTGTCGCGTGCCCCCCGCCTTGACACCTGCCGG
CTACAATAGCCGTGGCGTGAAGATCGACAATATTTGTACAGAAGTATATA
AATGTAGATAAGTATGGGTGTGTTTTTTGAGGTTTTGGTGTCGGGCGGGC
GGGGCGGCGAGGCTGCCCGGGGTAGGGCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1389:5206..9235- >mRNA_L-elsbetiae_contig1389.2924.1 ID=mRNA_L-elsbetiae_contig1389.2924.1|Name=mRNA_L-elsbetiae_contig1389.2924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1944bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:5206..9235- (Laminarionema elsbetiae ELsaHSoW15) ATGCCCAAGCGCAGCCGGCCTCCCGTGGCTGAGCTGGCGCTGCGCCCCCC CGCAAGATGCGACGACGAGGTGTCGGAGGAGTTCGAGATGCCCAAGCGCA GCCGGCCTCCCGTGGCTGAGCTGGCGCTGCGCCCCCCCGCAAGATGCGAC GACGAGGTGTCGGAGGAGTTCGAGGCTAAGGCCAGACGCCGATCCGCCAC CCGCGCTGCGCTCGCCGCCGGTCCTTTTTCGACCGCCGGCGGCGGCGGCA GCGGCGGCAGCGGCGGAAGCGGAAGGATCTTCGACAGCGGCGGCAGCGGC GATGGGCGGTGGCGGAAGCTCCACGCCCGCGGCGGCGGGGGGGAAGACGG CCCCCCCCGGTTGAAGCTCTCGGTGGAGACGGCGGGGGACGGCGACGAGG TTTTGCTGTCACCCTCTGACCACCACCAGGGGGCACCGCGGGAACTGGAA GGCGGCGCCCCCCCCGCGCGGAGCTACTGCTCGTCGCCGGTCTCGCTCTC GTCGGGGTCAGAGAGAACGCCGGGTCTCCGCGACGGCCGCGACAGGAACG ACCAGCTGGTTTCTTCTGTGGACAGCGCGTGGTCCATGGGATCGATCGAT GAGACCGCCGCGAGAGAGGCTAAGGCCAGACGCCGATCCGCCACCCGCGC TGCGCTCGCCGCCGGTCCTTTTTCGACCGCCGGCGGCGGCGGCAGCGGCG GCAGCGGCGGAAGCGGAAGGATCTTCGACAGCGGCGGCAGCGGCGATGGG CGGTGGCGGAAGCTCCACGCCCGCGGCGGCGGGGGGGAAGACGGCCCCCC CCGGTTGAAGCTCTCGGTGGAGACGGCGGGGGACGGCGACGAGGTTTTGC TGTCACCCTCTGACCACCACCAGGGGGCACCGCGGGAACTGGAAGGCGGC GCCCCCCCCGCGCGGAGCTACTGCTCGTCGCCGGTCTCGCTCTCGTCGGG GTCAGAGAGAACGCCGGGTCTCCGCGACGGCCGCGACAGGAACGACCAGC TGGTTTCTTCTGTGGACAGCGCGTGGTCCATGGGATCGATCGATGAGACC GCCGCGAGAGAGCTCCGCAACACGAGGGAGGAGGATCGCACCTCCGGCGC TGACCCGGTGGCGCGGGTGCTCCTTTGCCAGTCGGACGACTGCGGCATCA ACGCCGCCGTCCTCACCGCCGCCGCTGCGGAAGGAGAGGACGGCGGAGAG AACAACAACGATGGTGTCCGGTCATCCGCCGGAGGGGACGGTGGCTCTCC ATCCCCTCCCGCCGCCGTCGGCGACGCCGCCGGTGTTGACGCCTCTTCTC CGCGGGCGTTCGAGGCGGCCGGCGGTGGCGGCGGTGGCGCCGCCGCGGCG AGCGTTTTCGGCTGGCCGGCGGCGAAGGGGGGCCGTTTCGATGCACCCCG TTCCGGCTTGTTCAGCCTCGGCTCCCGGAGCGCAGGGATCGGGGACGCTG GCGCCGTTCCGCGTACCCGCCTCTTCAAGCCTGTCGCGTGCCCCCCGCCT TGACTCCGCAACACGAGGGAGGAGGATCGCACCTCCGGCGCTGACCCGGT GGCGCGGGTGCTCCTTTGCCAGTCGGACGACTGCGGCATCAACGCCGCCG TCCTCACCGCCGCCGCTGCGGAAGGAGAGGACGGCGGAGAGAACAACAAC GATGGTGTCCGGTCATCCGCCGGAGGGGACGGTGGCTCTCCATCCCCTCC CGCCGCCGTCGGCGACGCCGCCGGTGTTGACGCCTCTTCTCCGCGGGCGT TCGAGGCGGCCGGCGGTGGCGGCGGTGGCGCCGCCGCGGCGAGCGTTTTC GGCTGGCCGGCGGCGAAGGGGGGCCGTTTCGATGCACCCCGTTCCGGCTT GTTCAGCCTCGGCTCCCGGAGCGCAGGGATCGGGGACGCTGGCGCCGTTC CGCGTACCCGCCTCTTCAAGCCTGTCGCGTGCCCCCCGCCTTGA back to top
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