mRNA_L-elsbetiae_contig1389.2923.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1389.2923.1
Unique NamemRNA_L-elsbetiae_contig1389.2923.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH)

HSP 1 Score: 86.3 bits (212), Expect = 1.360e-19
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            FNPQG R+LT SSDK AR+WD  TG CLQ+LEGHTDEIFSCAFNY
Sbjct:   80 FNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNY 124
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A5N4E733_CAMDR (Dynein assembly factor with WDR repeat domains 1 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4E733_CAMDR)

HSP 1 Score: 88.2 bits (217), Expect = 5.810e-19
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            FNPQG+R+LT SSDK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  376 FNPQGSRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 420
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A8D1EEP9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1EEP9_PIG)

HSP 1 Score: 86.7 bits (213), Expect = 7.070e-19
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  228 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 272
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A8D1K9R8_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1K9R8_PIG)

HSP 1 Score: 86.7 bits (213), Expect = 2.000e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  351 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 395
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A2G9RJ73_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ73_LITCT)

HSP 1 Score: 82.0 bits (201), Expect = 8.740e-18
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            FN QG+RILTASSDK A LWD  TG C+Q+LEGHTDEIFSCAFNY
Sbjct:  156 FNAQGSRILTASSDKTACLWDPQTGQCVQVLEGHTDEIFSCAFNY 200
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A2P4TGK6_BAMTH (Uncharacterized protein n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4TGK6_BAMTH)

HSP 1 Score: 80.1 bits (196), Expect = 7.740e-17
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   13 GTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            G RILTASSDK ARLWDA TG+CLQ LEGHTDEIFSCAFNY
Sbjct:  153 GNRILTASSDKTARLWDAATGHCLQTLEGHTDEIFSCAFNY 193
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A0G4GWY9_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWY9_9ALVE)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-16
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            F+P G ++LTASSD   RLW ADTG  LQ+LEGHTDEIFSCAFNY
Sbjct:    3 FSPNGAKVLTASSDWTCRLWRADTGALLQVLEGHTDEIFSCAFNY 47
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A7J6LPN1_PEROL (U4 u6 small nuclear ribonucleoprotein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LPN1_PEROL)

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-15
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNY 135
            F+P G R+LTA+SD   R+WD++TG CLQ+LEGHTDE+FSCAFNY
Sbjct:  318 FSPTGCRVLTAASDHTCRVWDSNTGECLQVLEGHTDEVFSCAFNY 362
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: A0A8C8ACZ8_9STRI (Uncharacterized protein n=1 Tax=Otus sunia TaxID=257818 RepID=A0A8C8ACZ8_9STRI)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-15
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIF 117
            FNP+G  ILTASSDK ARLWDA TG+CLQ+LEGHTDEIF
Sbjct:   25 FNPKGNCILTASSDKTARLWDAATGHCLQILEGHTDEIF 63
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BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Match: UPI0003F0EC26 (dynein assembly factor with WDR repeat domains 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EC26)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-15
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCA 126
            FNPQGT++LTAS+DK ARLW+  TG CLQ+LEGHTDEIFSCA
Sbjct:  354 FNPQGTKLLTASADKTARLWNPLTGECLQVLEGHTDEIFSCA 395
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1389.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A643C2B2_BALPH1.360e-1980.00Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A5N4E733_CAMDR5.810e-1982.22Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A8D1EEP9_PIG7.070e-1980.00Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A8D1K9R8_PIG2.000e-1880.00Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A2G9RJ73_LITCT8.740e-1880.00Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]
A0A2P4TGK6_BAMTH7.740e-1787.80Uncharacterized protein n=1 Tax=Bambusicola thorac... [more]
A0A0G4GWY9_9ALVE1.510e-1673.33Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A7J6LPN1_PEROL1.500e-1568.89U4 u6 small nuclear ribonucleoprotein n=1 Tax=Perk... [more]
A0A8C8ACZ8_9STRI1.710e-1582.05Uncharacterized protein n=1 Tax=Otus sunia TaxID=2... [more]
UPI0003F0EC265.400e-1578.57dynein assembly factor with WDR repeat domains 1-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1389contigL-elsbetiae_contig1389:145..1274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score85.1
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog9315.ENSMEUP00000012205
Preferred nameDAW1
KEGG koko:K19760
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Dynein assembly factor with WDR repeat domains 1
EggNOG OGs3AFR9@33154,3B9C4@33208,3CZSY@33213,3JE5T@40674,489VX@7711,493NG@7742,4K0DU@9263,KOG0272@1,KOG0272@2759
COG Functional cat.A
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.8499248-CDS-L-elsbetiae_contig1389:144..3011622815545.8499248-CDS-L-elsbetiae_contig1389:144..301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 145..301 +
1691682951.4393532-CDS-L-elsbetiae_contig1389:144..3011691682951.4393532-CDS-L-elsbetiae_contig1389:144..301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 145..301 +
1622815545.8610582-CDS-L-elsbetiae_contig1389:1236..12741622815545.8610582-CDS-L-elsbetiae_contig1389:1236..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 1237..1274 +
1691682951.450309-CDS-L-elsbetiae_contig1389:1236..12741691682951.450309-CDS-L-elsbetiae_contig1389:1236..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 1237..1274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1389.2923.1prot_L-elsbetiae_contig1389.2923.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1389 145..1274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1389.2923.1

>prot_L-elsbetiae_contig1389.2923.1 ID=prot_L-elsbetiae_contig1389.2923.1|Name=mRNA_L-elsbetiae_contig1389.2923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
FNPQGTRILTASSDKVARLWDADTGNCLQLLEGHTDEIFSCAFNYEGDTI
ITGSKDNTCRLWRC*
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mRNA from alignment at L-elsbetiae_contig1389:145..1274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1389.2923.1 ID=mRNA_L-elsbetiae_contig1389.2923.1|Name=mRNA_L-elsbetiae_contig1389.2923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1130bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:145..1274+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACCCGCAGGGGACTCGCATCCTGACAGCGAGCAGCGACAAGGTGGC
CCGCCTGTGGGACGCAGACACCGGCAACTGCCTGCAGCTGCTGGAGGGCC
ACACGGACGAGATCTTCTCCTGCGCCTTCAACTACGAGGGAGACACCATC
ATCACCGGTGAGGCGTGCCGAGCGGGAGCGGGCGTAGGGGAGAGGAGAGG
GGAGGGGAGGGGCCTCCCGGATTGCAGGGCTGGCACCACAGCTACAAAAC
ATCGAAAGCCCAGAACCAAGGGGGAGGGGGGGGGGGGTCTTATTATATAG
GATTTAGTATGATGAGCGTGCGAGCGAGCGTAGGGGAGAGGAGAGGAGAG
GAGAGGACCAGACTACCGAGACGAGTGCCGGCCGTTGTTCTCCGCAGTGG
CATGGCCAATCTGCGTGAATGTTTTTCATACGGGTAGCCTTGATTTAGAG
CCTACCGAACACTGTGAAAATATCTACACACTTGGGTTACATAGTTCGCA
ATTTCTAGTTGCGACCTGACGTTTGTGAGCCTAGATATTAGTCCTCGGGA
AAGCAGTAAATCAGTAACCGGCGTTTCGTTTCTCCGCGAGCCAAGGCGCT
TCGTTTACGGTCGATTCCCTCTTCGAGCAAACCCCGGCCGTCGAGTAAGG
TCGCCATTTCCCACGACCCCCGCCCTTTGCTGACGGTATATTTTGTTAAA
GGCGTTTTGTAAGCCACCCCCATTGAGTCAATACAACCCCCCGTACTGCG
GGGTATACTTCTAGGACTGGATATCTATCACGACCTACGTACCCCCTCAA
TTTTCACCAGACCGGATGCTGTATGTATGGTACATACTCTGAAAGCAGAA
GTCTGGTATTTTGTATTTTTCCACCGAACAATGGTTTGCAGTGATGAATT
TAGCTAGATATTTGCTCTTCGAAGCACACGGGGACTAGTTGACAACCGCT
TCCCCTCCCCGGCACAAGCGGCCCACCAGGCGCGATGGCCACGTATGTCC
ACAAACTGCCTGTTAAACCCCATAACTTTAATTAACCTATCTACTCTCTA
GTAACTTTTTCGAAACAAACCATGATCTCGTTGCTCTCGCAGGTTCGAAG
GACAACACCTGCCGGCTGTGGCGGTGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1389:145..1274+

>mRNA_L-elsbetiae_contig1389.2923.1 ID=mRNA_L-elsbetiae_contig1389.2923.1|Name=mRNA_L-elsbetiae_contig1389.2923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:145..1274+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACCCGCAGGGGACTCGCATCCTGACAGCGAGCAGCGACAAGGTGGC
CCGCCTGTGGGACGCAGACACCGGCAACTGCCTGCAGCTGCTGGAGGGCC
ACACGGACGAGATCTTCTCCTGCGCCTTCAACTACGAGGGAGACACCATC
ATCACCGTTCAACCCGCAGGGGACTCGCATCCTGACAGCGAGCAGCGACA
AGGTGGCCCGCCTGTGGGACGCAGACACCGGCAACTGCCTGCAGCTGCTG
GAGGGCCACACGGACGAGATCTTCTCCTGCGCCTTCAACTACGAGGGAGA
CACCATCATCACCGGTTCGAAGGACAACACCTGCCGGCTGTGGCGGTGCT
GAGTTCGAAGGACAACACCTGCCGGCTGTGGCGGTGCTGA
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