mRNA_L-elsbetiae_contig13884.2922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13884.2922.1
Unique NamemRNA_L-elsbetiae_contig13884.2922.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13884.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13884contigL-elsbetiae_contig13884:3433..4013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.7373853-CDS-L-elsbetiae_contig13884:3432..34981622815545.7373853-CDS-L-elsbetiae_contig13884:3432..3498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13884 3433..3498 +
1691682951.4037545-CDS-L-elsbetiae_contig13884:3432..34981691682951.4037545-CDS-L-elsbetiae_contig13884:3432..3498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13884 3433..3498 +
1622815545.7478151-CDS-L-elsbetiae_contig13884:3891..40111622815545.7478151-CDS-L-elsbetiae_contig13884:3891..4011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13884 3892..4011 +
1691682951.4128447-CDS-L-elsbetiae_contig13884:3891..40111691682951.4128447-CDS-L-elsbetiae_contig13884:3891..4011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13884 3892..4011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13884.2922.1prot_L-elsbetiae_contig13884.2922.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13884 3433..4011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13884.2922.1

>prot_L-elsbetiae_contig13884.2922.1 ID=prot_L-elsbetiae_contig13884.2922.1|Name=mRNA_L-elsbetiae_contig13884.2922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
VAEKPGTSLENDLRFQAVAFEQGENDNKFRMKKIMKKSSRDERDLPALRD
LVEEAWHEGFVH
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mRNA from alignment at L-elsbetiae_contig13884:3433..4013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13884.2922.1 ID=mRNA_L-elsbetiae_contig13884.2922.1|Name=mRNA_L-elsbetiae_contig13884.2922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=581bp|location=Sequence derived from alignment at L-elsbetiae_contig13884:3433..4013+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCAGAGAAGCCCGGGACATCGCTCGAGAACGACTTGCGGTTTCAGGC TGTTGCCTTCGAACAGGTATAACATGTGACCCAAGAGAGAGAAACAGAGA GAACCAAAGAACCAAAGAGAAGCCACCTGTCGTAGTGCATTTGCTTGGGT TCGACCTGCACAATAATAAGCATAGTCAGGCGCGGACAGTGGGGAGTTTC GGCAGTTTTTCGATTGGCTCAGGTTTTTGGCCCAGGTTTTTTATTAAATA TCTGCCTGCACCAAAATTCCAGCATTTGCTCAGATCTTTTCGGCGGCGAG ATTTCGAATGATGTAGAACCCTGCATCGCGTTCATTGGCGGAACGACCGC CGCGTTTTCCATTCCTGTCCAATCCAACATCAACCAGTTCGTTTTGTCCA CGGACCTGGCTCGTGTTTCTAATGGCGTTGGGCTCCCTCCTCCCATCCTT TGTTCCCAGGGAGAGAACGACAACAAATTCCGCATGAAAAAGATCATGAA GAAAAGTAGTAGAGACGAACGAGATCTGCCGGCTCTACGCGATCTTGTCG AGGAGGCTTGGCACGAGGGTTTTGTCCACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13884:3433..4013+

>mRNA_L-elsbetiae_contig13884.2922.1 ID=mRNA_L-elsbetiae_contig13884.2922.1|Name=mRNA_L-elsbetiae_contig13884.2922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig13884:3433..4013+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCAGAGAAGCCCGGGACATCGCTCGAGAACGACTTGCGGTTTCAGGC
TGTTGCCTTCGAACAGGTTGCAGAGAAGCCCGGGACATCGCTCGAGAACG
ACTTGCGGTTTCAGGCTGTTGCCTTCGAACAGGGAGAGAACGACAACAAA
TTCCGCATGAAAAAGATCATGAAGAAAAGTAGTAGAGACGAACGAGATCT
GCCGGCTCTACGCGATCTTGTCGAGGAGGCTTGGCACGAGGGTTTTGTCC
ACGGAGAGAACGACAACAAATTCCGCATGAAAAAGATCATGAAGAAAAGT
AGTAGAGACGAACGAGATCTGCCGGCTCTACGCGATCTTGTCGAGGAGGC
TTGGCACGAGGGTTTTGTCCAC
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