mRNA_L-elsbetiae_contig13880.2921.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: D7G7B4_ECTSI (Cobalamin synthesis protein, P47K n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B4_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.900e-42 Identity = 122/270 (45.19%), Postives = 144/270 (53.33%), Query Frame = 1 Query: 10 MTPCSATVWCALLVNTSM-RRSVLAASTRGGQPAAFVSTVVS--SRRGLRNFVSGSAIGDGRRAVETLA----RGSCFPSSSSL-----------WVQHQPLRRRRTTRNGRRGSSPTVSSEEKSRVKVGGGARRGVSMGXXXXXXXXXXXXXSGSRAA-GEAMKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 M+P SATVW A LVN SM RRSVLA++T QPAAF+ T+V+ SR G + S GRRA R F SS S W +H R R ++P + + G + G S A AMKVTLLSGFLGAGKTTLM NVLRQAREE+LS+AVIVNDMAD+N+DAQLL G ++ G LAA A +A + S TSVAMQ GCICCTLKD+LLLEV Sbjct: 6 MSPGSATVWYAFLVNASMMRRSVLASTTGRLQPAAFIGTIVTTTSRAGRGSLASDGPASGGRRATTREVFMGFRSPWFSSSRSTDSSGVQRLQPWWQRHHHRHRNEFATKSRFAATPXXXXXXXTGAERESGIPLPTAAGGGAVVKGDSGSGRSDKSATPAAAMKVTLLSGFLGAGKTTLMSNVLRQAREEKLSLAVIVNDMADINVDAQLLTLGNGLDQ--GDLAAAGASGSAVAGESSS-----GVTSVAMQDGCICCTLKDELLLEV 268
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: A0A6H5JJT0_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT0_9PHAE) HSP 1 Score: 160 bits (405), Expect = 8.190e-42 Identity = 123/268 (45.90%), Postives = 143/268 (53.36%), Query Frame = 1 Query: 10 MTPCSATVWCALLVNTSM-RRSVLAASTRGGQPAAFVSTVVS--SRRGLRNFVSGSAIGDGRRAVETLA----RGSCFPSSSSL----------WVQHQPLRRRRTTRNGRRGSSPTVSSEEKSRVKVGGGARRGVSMGXXXXXXXXXXXXXSGSRAAGEAMKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 M+P SA VW ALLVN SM RRSVLA++TR QPAAF+ T+ + SR G + S GRRA R F SS + W Q R R ++PT S+ R G R + G S MKVTLLSGFLGAGKTTLM NVLRQAREEQLS+AVIVNDMAD+N+DAQ+L G ++ GG AA A+ S V TSVAMQ GCICCTLKD+LLLEV Sbjct: 6 MSPGSAAVWYALLVNASMMRRSVLASTTRRLQPAAFIGTIATTTSRTGRGSIASQGPARGGRRATTREVFMGFRSPWFSSSRATASSGVQRLQPWWQRHHHRLNEIATKSRFATTPTASAAGAERES---GIPRPTAAGDGVVVEGGNGGSSDKSATPAAVMKVTLLSGFLGAGKTTLMSNVLRQAREEQLSLAVIVNDMADINVDAQILTLGNGLDQ-GGIAAAGASGSXXXXXXSSGV------TSVAMQDGCICCTLKDELLLEV 263
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: Q0BRV9_GRABC (Low-affinity zinc transport protein n=7 Tax=Granulibacter bethesdensis TaxID=364410 RepID=Q0BRV9_GRABC) HSP 1 Score: 88.2 bits (217), Expect = 1.980e-16 Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 442 MKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 + VT+LSGFLGAGKTTLM +VL + L +AVIVNDM++VNIDA L+ + + GG++A T +T V M GCICCTL+DDLL+EV Sbjct: 13 LPVTVLSGFLGAGKTTLMNHVLHN--RDGLRVAVIVNDMSEVNIDADLIRADTASDGTGGAVART------------------QETLVEMSNGCICCTLRDDLLIEV 99
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: A0A2S5MRL8_HYPSQ (4-hydroxytetrahydrobiopterin dehydratase n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MRL8_HYPSQ) HSP 1 Score: 86.7 bits (213), Expect = 6.940e-16 Identity = 55/114 (48.25%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 421 SRAAGEAMKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 S AA + + VT+LSGFLGAGKTTL+ +VL E L +AVIVNDM++VNIDA+L+ RG G L T +T V M GCICCTL+DDLL EV Sbjct: 13 SAAADKRLPVTVLSGFLGAGKTTLLNHVLNN--REGLRVAVIVNDMSEVNIDAELVERG------GADLKRT------------------EETLVEMSNGCICCTLRDDLLKEV 100
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: UPI001F41D1CF (GTP-binding protein n=2 Tax=Hydrogenophaga TaxID=47420 RepID=UPI001F41D1CF) HSP 1 Score: 86.3 bits (212), Expect = 9.230e-16 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 442 MKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 + VT+LSGFLGAGKTTL+ +VL A E L +AVIVNDM++VNIDA L+ RG E G +L+ T + V M GCICCTL++DLLLEV Sbjct: 11 LPVTVLSGFLGAGKTTLLNHVL--ANREGLRVAVIVNDMSEVNIDASLVERGA--ENAGAALSRT------------------EEKMVEMSNGCICCTLREDLLLEV 95
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: UPI001D034A87 (GTP-binding protein n=1 Tax=Kinneretia sp. XES5 TaxID=2877940 RepID=UPI001D034A87) HSP 1 Score: 85.9 bits (211), Expect = 1.200e-15 Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 442 MKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 + VT+LSGFLGAGKTTL+ +VL A + L +AVIVNDM++VNIDA L+ RG E+ G +L+ T + V M GCICCTL++DLLLEV Sbjct: 5 LPVTVLSGFLGAGKTTLLNHVL--ANRQGLRVAVIVNDMSEVNIDAALVARGS--EKAGAALSRT------------------EERLVEMSNGCICCTLREDLLLEV 89
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: A0A328CAT8_9DELT (CobW C-terminal domain-containing protein n=1 Tax=Lujinxingia litoralis TaxID=2211119 RepID=A0A328CAT8_9DELT) HSP 1 Score: 85.9 bits (211), Expect = 1.220e-15 Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 430 AGEAMKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 A + + VTLLSGFLGAGKTTL+ ++L + L +AVIVNDM+++N+DAQL+ RG G SL+ T +T V + GCICCTL++DLLLEV Sbjct: 7 ADKRLPVTLLSGFLGAGKTTLLNHILHN--RQGLRVAVIVNDMSEINVDAQLVERG------GASLSRT------------------EETLVELSNGCICCTLREDLLLEV 91
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: A0A843S878_9BURK (GTP-binding protein n=2 Tax=Rugamonas TaxID=212744 RepID=A0A843S878_9BURK) HSP 1 Score: 85.9 bits (211), Expect = 1.270e-15 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 442 MKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 + VT+LSGFLGAGKTTL+ +VL A E L +AVIVNDM++VNIDA LL +G E G +L+ T + V M GCICCTL++DLLLEV Sbjct: 8 LPVTVLSGFLGAGKTTLLNHVL--ANREGLRVAVIVNDMSEVNIDASLLRKGA--ENAGAALSRT------------------EEKMVEMSNGCICCTLREDLLLEV 92
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: A8HR22_AZOC5 (Putative cobalamin synthesis protein n=3 Tax=Azorhizobium TaxID=6 RepID=A8HR22_AZOC5) HSP 1 Score: 85.9 bits (211), Expect = 1.270e-15 Identity = 54/111 (48.65%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 430 AGEAMKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 A + VT+LSGFLGAGKTTL+ +VL A E L +AVIVNDM++VNIDA+L+ G GG L+ T +T V M GCICCTL+DDLL EV Sbjct: 12 ADNRLPVTVLSGFLGAGKTTLLNHVL--ANREGLRVAVIVNDMSEVNIDAELIRAG------GGDLSRT------------------QETLVEMTNGCICCTLRDDLLAEV 96
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Match: UPI00140CF2E0 (GTP-binding protein n=1 Tax=Duganella aceris TaxID=2703883 RepID=UPI00140CF2E0) HSP 1 Score: 85.5 bits (210), Expect = 1.470e-15 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 442 MKVTLLSGFLGAGKTTLMRNVLRQAREEQLSIAVIVNDMADVNIDAQLLVRGESEEEPGGSLAATAAPSAAPVADVRSVRTVNSDTSVAMQGGCICCTLKDDLLLEV 762 + VT+LSGFLGAGKTTL+ +VL A E L +AVIVNDM++VNIDA LL +G E G +L+ T + V M GCICCTL++DLLLEV Sbjct: 12 LPVTVLSGFLGAGKTTLLNHVL--ANREGLRVAVIVNDMSEVNIDASLLRQGA--ENAGAALSRT------------------EEKMVEMSNGCICCTLREDLLLEV 96 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13880.2921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13880.2921.1 >prot_L-elsbetiae_contig13880.2921.1 ID=prot_L-elsbetiae_contig13880.2921.1|Name=mRNA_L-elsbetiae_contig13880.2921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=251bp MTPCSATVWCALLVNTSMRRSVLAASTRGGQPAAFVSTVVSSRRGLRNFVback to top mRNA from alignment at L-elsbetiae_contig13880:160..1470- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13880.2921.1 ID=mRNA_L-elsbetiae_contig13880.2921.1|Name=mRNA_L-elsbetiae_contig13880.2921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1311bp|location=Sequence derived from alignment at L-elsbetiae_contig13880:160..1470- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13880:160..1470- >mRNA_L-elsbetiae_contig13880.2921.1 ID=mRNA_L-elsbetiae_contig13880.2921.1|Name=mRNA_L-elsbetiae_contig13880.2921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1506bp|location=Sequence derived from alignment at L-elsbetiae_contig13880:160..1470- (Laminarionema elsbetiae ELsaHSoW15)back to top |