mRNA_L-elsbetiae_contig13870.2917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13870.2917.1
Unique NamemRNA_L-elsbetiae_contig13870.2917.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13870.2917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13870contigL-elsbetiae_contig13870:1982..2601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13870.2917.1prot_L-elsbetiae_contig13870.2917.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13870 2063..2440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.286852-UTR-L-elsbetiae_contig13870:1981..20621622815545.286852-UTR-L-elsbetiae_contig13870:1981..2062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13870 1982..2062 +
1691682951.1679707-UTR-L-elsbetiae_contig13870:1981..20621691682951.1679707-UTR-L-elsbetiae_contig13870:1981..2062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13870 1982..2062 +
1622815545.3115306-UTR-L-elsbetiae_contig13870:2440..26011622815545.3115306-UTR-L-elsbetiae_contig13870:2440..2601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13870 2441..2601 +
1691682951.190358-UTR-L-elsbetiae_contig13870:2440..26011691682951.190358-UTR-L-elsbetiae_contig13870:2440..2601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13870 2441..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.2998838-CDS-L-elsbetiae_contig13870:2062..24401622815545.2998838-CDS-L-elsbetiae_contig13870:2062..2440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13870 2063..2440 +
1691682951.1815517-CDS-L-elsbetiae_contig13870:2062..24401691682951.1815517-CDS-L-elsbetiae_contig13870:2062..2440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13870 2063..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13870.2917.1

>prot_L-elsbetiae_contig13870.2917.1 ID=prot_L-elsbetiae_contig13870.2917.1|Name=mRNA_L-elsbetiae_contig13870.2917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MTTLLSPSRAGGDARKAAAAVRRRDHAALAVAVGGLGSGGCVLVPKLHCA
TSNDARHHRCFFCVCMCMYSDGGNLGRQAHGKVMMNARQGKVMISTQIGW
PRKEKRALQLIHMVHTYRKRAATAV*
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mRNA from alignment at L-elsbetiae_contig13870:1982..2601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13870.2917.1 ID=mRNA_L-elsbetiae_contig13870.2917.1|Name=mRNA_L-elsbetiae_contig13870.2917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=620bp|location=Sequence derived from alignment at L-elsbetiae_contig13870:1982..2601+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGGTTGCTGGTGCAGGGCGAAGATCGCGTCATCCAGCCGGAGTACCCG
CAGCAGGTTCTCGAGGCTGCCGCCGCCGCCGATGACGACACTGCTGTCGC
CGAGCCGGGCAGGGGGCGACGCCAGGAAAGCGGCGGCGGCGGTGCGGCGA
CGCGACCACGCTGCTCTCGCTGTTGCTGTTGGTGGTCTCGGCAGCGGCGG
TTGTGTGTTGGTGCCCAAGCTGCACTGTGCCACCAGCAACGACGCCAGGC
ACCACCGTTGCTTTTTTTGTGTGTGTATGTGTATGTACAGCGACGGCGGC
AATTTGGGGAGACAGGCACACGGTAAGGTTATGATGAACGCAAGGCAGGG
CAAGGTAATGATTTCCACACAGATCGGCTGGCCTCGCAAAGAGAAGAGAG
CACTACAATTAATACATATGGTACATACCTACCGAAAACGCGCTGCCACT
GCTGTGTAGTCTAGACTAAATACACCAGTGAAATCGCCCCGTGAGCAATT
TGATGGATGATAGGTTCAAGGGGACCCTGGGATAGCGAGAAAAATAACCG
ATAACACGATTTACTCTGTGGTGATTCTCCTAGTTCTCCCTCCAAAATAT
TGGCTGACACCAACCTGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13870:1982..2601+

>mRNA_L-elsbetiae_contig13870.2917.1 ID=mRNA_L-elsbetiae_contig13870.2917.1|Name=mRNA_L-elsbetiae_contig13870.2917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig13870:1982..2601+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACACTGCTGTCGCCGAGCCGGGCAGGGGGCGACGCCAGGAAAGC
GGCGGCGGCGGTGCGGCGACGCGACCACGCTGCTCTCGCTGTTGCTGTTG
GTGGTCTCGGCAGCGGCGGTTGTGTGTTGGTGCCCAAGCTGCACTGTGCC
ACCAGCAACGACGCCAGGCACCACCGTTGCTTTTTTTGTGTGTGTATGTG
TATGTACAGCGACGGCGGCAATTTGGGGAGACAGGCACACGGTAAGGTTA
TGATGAACGCAAGGCAGGGCAAGGTAATGATTTCCACACAGATCGGCTGG
CCTCGCAAAGAGAAGAGAGCACTACAATTAATACATATGGTACATACCTA
CCGAAAACGCGCTGCCACTGCTGTGTAGATGACGACACTGCTGTCGCCGA
GCCGGGCAGGGGGCGACGCCAGGAAAGCGGCGGCGGCGGTGCGGCGACGC
GACCACGCTGCTCTCGCTGTTGCTGTTGGTGGTCTCGGCAGCGGCGGTTG
TGTGTTGGTGCCCAAGCTGCACTGTGCCACCAGCAACGACGCCAGGCACC
ACCGTTGCTTTTTTTGTGTGTGTATGTGTATGTACAGCGACGGCGGCAAT
TTGGGGAGACAGGCACACGGTAAGGTTATGATGAACGCAAGGCAGGGCAA
GGTAATGATTTCCACACAGATCGGCTGGCCTCGCAAAGAGAAGAGAGCAC
TACAATTAATACATATGGTACATACCTACCGAAAACGCGCTGCCACTGCT
GTGTAG
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