mRNA_L-elsbetiae_contig1387.2915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1387.2915.1
Unique NamemRNA_L-elsbetiae_contig1387.2915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1387.2915.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.380e-19
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:  157 MIDLGVAPEDLAAIAEEIAKTSSKIESVELALGGRGEYLGMGTTDKEKLLGQLDVLQTKEAQLQKKELLIMGAAVAGASAAA 402
            M D G    +L A+AE++AKTS+KIESVE+AL G+G YLG+  TDK+ LL QLDVLQ KEAQLQ KEL IM AAVAGASA+A
Sbjct:    1 MADAGTTTAELTAVAEDLAKTSAKIESVEMALSGQGVYLGI--TDKDTLLSQLDVLQKKEAQLQTKELFIM-AAVAGASASA 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1387.2915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4L4_ECTSI6.380e-1967.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1387contigL-elsbetiae_contig1387:23104..24988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size561
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1387.2915.1prot_L-elsbetiae_contig1387.2915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1387 23236..24988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.164177-UTR-L-elsbetiae_contig1387:23103..232351622815545.164177-UTR-L-elsbetiae_contig1387:23103..23235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1387 23104..23235 +
1691682951.0887792-UTR-L-elsbetiae_contig1387:23103..232351691682951.0887792-UTR-L-elsbetiae_contig1387:23103..23235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1387 23104..23235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.1852932-CDS-L-elsbetiae_contig1387:23235..233311622815545.1852932-CDS-L-elsbetiae_contig1387:23235..23331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 23236..23331 +
1691682951.1067998-CDS-L-elsbetiae_contig1387:23235..233311691682951.1067998-CDS-L-elsbetiae_contig1387:23235..23331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 23236..23331 +
1622815545.1968822-CDS-L-elsbetiae_contig1387:24314..244591622815545.1968822-CDS-L-elsbetiae_contig1387:24314..24459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 24315..24459 +
1691682951.123643-CDS-L-elsbetiae_contig1387:24314..244591691682951.123643-CDS-L-elsbetiae_contig1387:24314..24459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 24315..24459 +
1622815545.2132993-CDS-L-elsbetiae_contig1387:24800..249881622815545.2132993-CDS-L-elsbetiae_contig1387:24800..24988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 24801..24988 +
1691682951.1375544-CDS-L-elsbetiae_contig1387:24800..249881691682951.1375544-CDS-L-elsbetiae_contig1387:24800..24988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 24801..24988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1387.2915.1

>prot_L-elsbetiae_contig1387.2915.1 ID=prot_L-elsbetiae_contig1387.2915.1|Name=mRNA_L-elsbetiae_contig1387.2915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MEHQPYYGMIDLGVAPEDLAAIAEEIAKTSSKIESVELALGGRGEYLGMG
TTDKEKLLGQLDVLQTKEAQLQKKELLIMGAAVAGASAAAPTPSPPLPAA
PAAPAFSSTRTAALPKGCLPVPAPGAAASPASSPASALSLSSA
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mRNA from alignment at L-elsbetiae_contig1387:23104..24988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1387.2915.1 ID=mRNA_L-elsbetiae_contig1387.2915.1|Name=mRNA_L-elsbetiae_contig1387.2915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1885bp|location=Sequence derived from alignment at L-elsbetiae_contig1387:23104..24988+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGGTCACGCTGAGATAAGAGAGGGAGATAGCGGAAAGCACGCTTGGA
CCGCTCGCGCATTTTATTTTTTCAAGTGGGTCCGTAGGTTGACACTGTTG
CTTTTTCGAGTTGGTCTGGTGCCTGTCCTGCCATGGAACATCAGCCGTAC
TACGGGATGATCGACTTGGGAGTGGCCCCGGAAGATCTAGCCGCGATCGC
AGAGGAGATCGCCAAGACATCGTCGAAGGTGCCGTCTTTGTTGTCCCTCG
GTCGTGACTGGAATATATGTAATATGTATGATGTGCTGTGTGCTGTGTCG
TCGGTGTGCCAGGGTCGTCCTGTCCGTAGTGTCGTCGTGCTCGGAGACAA
CAGTCCCTCGACACGAATGGGCGAGTTTCAGCTCCCTACTCGTATATATC
TGCTATACATGACTTCCACGTACGAAATATATCTTGGCCCGGGCGGGAGC
GGCATCGGTGACTTTGCTGGGAAGCTCTGCCGTCGGCGCGTCATCTATCT
CCAAAAGTAGACCATGCTGAGGATTTTTTAGCGAGGAACCCGCCCTCTGT
CATCTCGCCTTTGCCACATACCAGCTACAGCAGCCGCAGTAACAGTAGCA
GCAGTAGCAGTAGCTTGTCATATATATTGTTGAAACCGCGAGGACACTAG
CGTTTATGAGACGCGTCTGATGTGTGTTGTACAGGAAATACAGCAGCCGC
AGTAGCAGTAGCAGTAGCAGCAGTAGCAGTAGCTTCTCATATATATTGTT
GAAACCGCGAGGACACTAGCGTTTATGAGACGCCTCTGATGTGTGTTGTA
CAGGAAATTTTGAACTTGGTGCTCGTCGGCAACGTGAAAACATACATATC
TACAATACTTCTATTTATTTCGAGCGTCGCACACGTCATTTCGAGCGAGA
GAAACAGAGCAAATGGCCCGTTCGCACACCACACACACACACCAGACATA
CGACCCATGCATATTGAACACATGCTAGTCCAATACGGGGTCGTGTGAAC
ATACACATACATAAACGCTGCGGTTTCCGAGAGCATGCGCGCGTCTGTCT
TTTTCCGGGGCAAGGGGAGGTGCCGACGTGCCGACTCTCTGAAGCGCTTG
CTGTCGATTCACGAAGCACCCCCTGCACTGACTTGAGTTATGATCCATCT
CGTTTTCCTCGCGTTTGGTGCCGATCGATGCCCCGTGCCCCTGTTCCTGC
CCCTGCCACAGATCGAGAGCGTGGAGCTAGCGCTTGGCGGGCGCGGGGAG
TACCTGGGGATGGGGACGACGGACAAGGAGAAGCTCCTGGGGCAGCTGGA
TGTCCTGCAGACCAAGGAAGCACAGCTGCAGAAGAAGGAGCTGCTCATCA
TGGGCGGTGTGTATCTGCCTTGCGGTGAACGGTACTGGTCCATCTGTGTA
GCGGCAGCAGTTTTCCTCTCTTTGAATAAATACACAGCAGTCTCAAACTA
CTGGGCAGTTTAGCTTCGCTGCCTCTGTTACGTACGCTGGAGCTGCTGAA
CTGTCGCGACCGACCGGTAGAGGCTCTCCCTGCACTCTTGGGCTGTTCGG
GGTGTCATGCTCACGCGATGAATCGTTTCATCGAAGTACAACTCGTGTGA
CCCCCTCGTCCACCCCCCCGTCCTCCACGTGCTATGTATCTATCTACGCT
TGCTCTGCCCCGAACGGAAATATATCAACGTCGCGGAAAAAATGCAGCAG
CGGTGGCCGGGGCTTCGGCTGCAGCACCGACTCCGTCTCCACCCCTGCCG
GCGGCGCCTGCCGCGCCGGCGTTCTCCTCCACGCGCACGGCAGCCTTGCC
TAAAGGCTGTCTGCCCGTCCCCGCGCCTGGTGCAGCCGCTTCTCCGGCTT
CGTCTCCGGCCTCGGCTCTTTCTCTGTCTTCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1387:23104..24988+

>mRNA_L-elsbetiae_contig1387.2915.1 ID=mRNA_L-elsbetiae_contig1387.2915.1|Name=mRNA_L-elsbetiae_contig1387.2915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1387:23104..24988+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACATCAGCCGTACTACGGGATGATCGACTTGGGAGTGGCCCCGGA
AGATCTAGCCGCGATCGCAGAGGAGATCGCCAAGACATCGTCGAAGATGG
AACATCAGCCGTACTACGGGATGATCGACTTGGGAGTGGCCCCGGAAGAT
CTAGCCGCGATCGCAGAGGAGATCGCCAAGACATCGTCGAAGATCGAGAG
CGTGGAGCTAGCGCTTGGCGGGCGCGGGGAGTACCTGGGGATGGGGACGA
CGGACAAGGAGAAGCTCCTGGGGCAGCTGGATGTCCTGCAGACCAAGGAA
GCACAGCTGCAGAAGAAGGAGCTGCTCATCATGGGCGATCGAGAGCGTGG
AGCTAGCGCTTGGCGGGCGCGGGGAGTACCTGGGGATGGGGACGACGGAC
AAGGAGAAGCTCCTGGGGCAGCTGGATGTCCTGCAGACCAAGGAAGCACA
GCTGCAGAAGAAGGAGCTGCTCATCATGGGCGCAGCGGTGGCCGGGGCTT
CGGCTGCAGCACCGACTCCGTCTCCACCCCTGCCGGCGGCGCCTGCCGCG
CCGGCGTTCTCCTCCACGCGCACGGCAGCCTTGCCTAAAGGCTGTCTGCC
CGTCCCCGCGCCTGGTGCAGCCGCTTCTCCGGCTTCGTCTCCGGCCTCGG
CTCTTTCTCTGTCTTCGGCCCAGCGGTGGCCGGGGCTTCGGCTGCAGCAC
CGACTCCGTCTCCACCCCTGCCGGCGGCGCCTGCCGCGCCGGCGTTCTCC
TCCACGCGCACGGCAGCCTTGCCTAAAGGCTGTCTGCCCGTCCCCGCGCC
TGGTGCAGCCGCTTCTCCGGCTTCGTCTCCGGCCTCGGCTCTTTCTCTGT
CTTCGGCC
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