mRNA_L-elsbetiae_contig1387.2913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1387.2913.1
Unique NamemRNA_L-elsbetiae_contig1387.2913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1387.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1387contigL-elsbetiae_contig1387:89..2715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size922
Cds size921
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.9014666-CDS-L-elsbetiae_contig1387:89..2321622815544.9014666-CDS-L-elsbetiae_contig1387:89..232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 90..232 -
1691682950.9347641-CDS-L-elsbetiae_contig1387:89..2321691682950.9347641-CDS-L-elsbetiae_contig1387:89..232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 90..232 -
1622815544.9124045-CDS-L-elsbetiae_contig1387:632..7581622815544.9124045-CDS-L-elsbetiae_contig1387:632..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 633..758 -
1691682950.942915-CDS-L-elsbetiae_contig1387:632..7581691682950.942915-CDS-L-elsbetiae_contig1387:632..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 633..758 -
1622815544.9266462-CDS-L-elsbetiae_contig1387:976..11351622815544.9266462-CDS-L-elsbetiae_contig1387:976..1135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 977..1135 -
1691682950.9519129-CDS-L-elsbetiae_contig1387:976..11351691682950.9519129-CDS-L-elsbetiae_contig1387:976..1135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 977..1135 -
1622815544.9391513-CDS-L-elsbetiae_contig1387:1340..14721622815544.9391513-CDS-L-elsbetiae_contig1387:1340..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 1341..1472 -
1691682950.9610877-CDS-L-elsbetiae_contig1387:1340..14721691682950.9610877-CDS-L-elsbetiae_contig1387:1340..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 1341..1472 -
1622815544.951177-CDS-L-elsbetiae_contig1387:1717..19031622815544.951177-CDS-L-elsbetiae_contig1387:1717..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 1718..1903 -
1691682950.9714453-CDS-L-elsbetiae_contig1387:1717..19031691682950.9714453-CDS-L-elsbetiae_contig1387:1717..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 1718..1903 -
1622815544.9639928-CDS-L-elsbetiae_contig1387:2287..24161622815544.9639928-CDS-L-elsbetiae_contig1387:2287..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 2288..2416 -
1691682950.9826038-CDS-L-elsbetiae_contig1387:2287..24161691682950.9826038-CDS-L-elsbetiae_contig1387:2287..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 2288..2416 -
1622815544.980602-CDS-L-elsbetiae_contig1387:2669..27151622815544.980602-CDS-L-elsbetiae_contig1387:2669..2715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 2670..2715 -
1691682950.993875-CDS-L-elsbetiae_contig1387:2669..27151691682950.993875-CDS-L-elsbetiae_contig1387:2669..2715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1387 2670..2715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1387.2913.1prot_L-elsbetiae_contig1387.2913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1387 90..2715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1387.2913.1

>prot_L-elsbetiae_contig1387.2913.1 ID=prot_L-elsbetiae_contig1387.2913.1|Name=mRNA_L-elsbetiae_contig1387.2913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
FSFAFTDRPSPAQAGDPAMPPANPDMPVMPVMTATPSPSFDGSFSFAFTD
KPSPVGTDGPAMPVGPMPHADTPAPVRQPAPTPADPAMPVMPVMASTPPP
SFDGSFSFAFTDQPSPAQAGDPAMPPANPDMPVMPVMMAATPSPSFDGSF
SFAFTDEPSPVGTDGPATPERSIPPASTPAPVREPAPTPGNPDMPVMPVV
AATPSPSSEEPSPVQTDGPSTPERPTTPAGTPAPAGEAAPTPENPVAPTA
PDQTSMPAEVTMPMPTTPGATPSAPSPPGTPAPADTVTPGPSPSPVSMPT
PTTPGAT
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mRNA from alignment at L-elsbetiae_contig1387:89..2715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1387.2913.1 ID=mRNA_L-elsbetiae_contig1387.2913.1|Name=mRNA_L-elsbetiae_contig1387.2913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2627bp|location=Sequence derived from alignment at L-elsbetiae_contig1387:89..2715- (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGTTCGCCTTCACTGACCGGCCTTCACCTGCGCAGGCCGGAGGTAA
GCAGGATGCCGGGAGATCGAATGCCCCCTCAACATTTCGTAGACCTCCAT
TGAGCGGGTCATTATCGATGCCATCAGCGTTGGTCTTGGCTTCTTGGCTG
TACTGAAACAAGCAGCGTGTGTTGTTCCCAAAGTACGCTTCGACGATGTA
TCGTCGCCTCCGACGCCCCCGAGATATTTTGTTTGTCACCCCCCCCCGCC
CTTGCCTTTGCCCTTGCCCGCCGTCTACACCTGTGCCATTCCGCCCCAGA
TCCGGCGATGCCGCCAGCGAACCCCGACATGCCGGTGATGCCTGTGATGA
CTGCTACACCGTCCCCGAGCTTCGATGGGTCATTCTCGTTCGCCTTCACC
GATAAGCCTTCACCTGTGGGGACCGACGGTAAGCAAGATGACGGGAGATC
GAATGCCCCTTCAACATTTGTGGACCGCCTACGCAGAAATTTATGTTATA
CTACTAACTCTAATCCTAACCCTAACCCTAACGCCAACCACCAACCCCCC
AAACGGTTTCCATACTTTATCCCATATGTTCGCTTAAGACAAAAACCCCG
CGAGACTACTGACATTTGTAGACATCCATTTGAGCTGGTCAATATCGATG
CCACCAGCGTTTGTCTCGGCTTCTGAGCTGTGCCGAGACAAACAGCGCGT
GCTATTCCTTTCAAGTAGGCTTGGACGAATTTCCACCCCATTCACAACCG
CATTTTACCCTGATCCGCCACTACCGATCCGTTATTTCATCACGTTGTGT
GTTTCGCTCTAGGTCCGGCGATGCCGGTTGGACCAATGCCTCATGCTGAC
ACTCCTGCGCCTGTGCGTCAGCCAGCGCCCACACCAGCGGACCCCGCCAT
GCCGGTGATGCCTGTGATGGCTTCTACACCGCCCCCGAGCTTCGATGGGT
CATTCTCGTTCGCCTTCACCGACCAGCCTTCACCTGCGCAGGCCGGAGGT
AAGCAATGCTGGGACATCGAATCCTTCTCGACATTTGCAGACATCCATTT
GAGCCGTTCAATATCGATACCATCAGCGTTAGCTTGGCTTCTTGGCTGTA
CTGAAACAAGCAGCGTGTGTTGTTTCTTTCAAGTACGCTTCGACGATGTA
TCGTCGCCTCCAACGCCCCCGAGATATTTTGTTTCTGACCCACCCCCGCC
CTTGCCCTTGCCCGCCGTGCACACCTGTGCCATTTCGCCCTAGATCCGGC
GATGCCGCCAGCGAACCCCGACATGCCGGTGATGCCTGTGATGATGGCTG
CTACACCGTCCCCGAGCTTCGATGGGTCATTCTCGTTCGCCTTCACCGAT
GAGCCTTCACCTGTGGGGACCGACGGTATGCGCTGTAGGAAAGATCCGGC
CTTACATCTCGTGATAATAGTAGCTCCTTCCATCTTGGTTTTGTAGCTGT
GTTACAAGTAGGACACACGCCTGTCTTGTTCCGTCTACGTTTTTGACGAT
TCCCCACCGCACTCCACGCACCAAGATCATTTTGCCTCATCCACCCGCCC
TTTCCCACCGACCTTGCGTTCTCGCTCTAGGCCCGGCGACGCCAGAGAGA
TCAATTCCCCCTGCTAGCACTCCTGCACCCGTGCGAGAGCCAGCGCCCAC
ACCAGGGAACCCCGACATGCCGGTGATGCCTGTGGTGGCTGCTACACCGT
CCCCGAGCTCCGAGGAGCCTTCTCCTGTGCAGACCGATGGCAAGTGCTGC
CTCGAGGGCAGACGTAACCTTGTCGAACATGCGTTTGTTCAAAGCCGTTT
CATTGAACCTGTTGAAAAATCTCGGCTTCTTGGCCGTCGAAAATCGCGAA
CGGACCTCTACATGAGTGGACGTGTTCCCGGCGCTCACTGCGTCCAAGCA
GTTTTTCACGTCCCGCACTCCTCGCCTTTTCTCGCCATCCGTGCCTTCCC
GCCCTAGGTCCGTCGACGCCAGAGCGTCCAACAACCCCTGCTGGCACTCC
AGCACCTGCGGGCGAGGCAGCGCCTACACCCGAGAACCCTGTCGCCCCTA
CCGCACCGGACCAGACATCGATGCCTGCGGAAGGTGAGTGCTACAGTAGC
GTGGGTGGCTCTAGACGATGATGGTCGTCTGTGCGTTGTTTCTCACTGGT
TTTCAAATGGGGAAAACACTCTCGGTGGTAAATAAATCGAGGAGAATTTG
GCAGATGTTTTCCTGAATGCATGAGTGTGTCGAGCATTAAGCTGCTAAAT
GGTGCGGTTCGAGACTCGTGATTGCAGGCTAGTGATTTTGCTGTCGAAGG
TCGGCTGACGAATACTTAAATGTCTTGATGGCGTCAATATATGATCGACC
GTGACTACATACACGAAATCGACAGCGCCATGCATAAACCCGTGCGTATA
TTGATTTAATTTCGCTGGAAATATCCCTGACCCTCCTGTATTCTGTCGAC
CACCATTTCCCCCCGCCCCTCTCAAACCAACAGTGACAATGCCGATGCCC
ACCACACCTGGTGCTACTCCGAGCGCGCCCTCGCCACCCGGGACACCCGC
CCCGGCTGACACTGTGACCCCGGGCCCGTCTCCATCCCCCGTGAGCATGC
CGACGCCCACCACACCTGGTGCTACTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1387:89..2715-

>mRNA_L-elsbetiae_contig1387.2913.1 ID=mRNA_L-elsbetiae_contig1387.2913.1|Name=mRNA_L-elsbetiae_contig1387.2913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig1387:89..2715- (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGTTCGCCTTCACTGACCGGCCTTCACCTGCGCAGGCCGGAGTTCT
CGTTCGCCTTCACTGACCGGCCTTCACCTGCGCAGGCCGGAGATCCGGCG
ATGCCGCCAGCGAACCCCGACATGCCGGTGATGCCTGTGATGACTGCTAC
ACCGTCCCCGAGCTTCGATGGGTCATTCTCGTTCGCCTTCACCGATAAGC
CTTCACCTGTGGGGACCGACGATCCGGCGATGCCGCCAGCGAACCCCGAC
ATGCCGGTGATGCCTGTGATGACTGCTACACCGTCCCCGAGCTTCGATGG
GTCATTCTCGTTCGCCTTCACCGATAAGCCTTCACCTGTGGGGACCGACG
GTCCGGCGATGCCGGTTGGACCAATGCCTCATGCTGACACTCCTGCGCCT
GTGCGTCAGCCAGCGCCCACACCAGCGGACCCCGCCATGCCGGTGATGCC
TGTGATGGCTTCTACACCGCCCCCGAGCTTCGATGGGTCATTCTCGTTCG
CCTTCACCGACCAGCCTTCACCTGCGCAGGCCGGAGGTCCGGCGATGCCG
GTTGGACCAATGCCTCATGCTGACACTCCTGCGCCTGTGCGTCAGCCAGC
GCCCACACCAGCGGACCCCGCCATGCCGGTGATGCCTGTGATGGCTTCTA
CACCGCCCCCGAGCTTCGATGGGTCATTCTCGTTCGCCTTCACCGACCAG
CCTTCACCTGCGCAGGCCGGAGATCCGGCGATGCCGCCAGCGAACCCCGA
CATGCCGGTGATGCCTGTGATGATGGCTGCTACACCGTCCCCGAGCTTCG
ATGGGTCATTCTCGTTCGCCTTCACCGATGAGCCTTCACCTGTGGGGACC
GACGATCCGGCGATGCCGCCAGCGAACCCCGACATGCCGGTGATGCCTGT
GATGATGGCTGCTACACCGTCCCCGAGCTTCGATGGGTCATTCTCGTTCG
CCTTCACCGATGAGCCTTCACCTGTGGGGACCGACGGCCCGGCGACGCCA
GAGAGATCAATTCCCCCTGCTAGCACTCCTGCACCCGTGCGAGAGCCAGC
GCCCACACCAGGGAACCCCGACATGCCGGTGATGCCTGTGGTGGCTGCTA
CACCGTCCCCGAGCTCCGAGGAGCCTTCTCCTGTGCAGACCGATGGCCCG
GCGACGCCAGAGAGATCAATTCCCCCTGCTAGCACTCCTGCACCCGTGCG
AGAGCCAGCGCCCACACCAGGGAACCCCGACATGCCGGTGATGCCTGTGG
TGGCTGCTACACCGTCCCCGAGCTCCGAGGAGCCTTCTCCTGTGCAGACC
GATGGTCCGTCGACGCCAGAGCGTCCAACAACCCCTGCTGGCACTCCAGC
ACCTGCGGGCGAGGCAGCGCCTACACCCGAGAACCCTGTCGCCCCTACCG
CACCGGACCAGACATCGATGCCTGCGGAAGGTCCGTCGACGCCAGAGCGT
CCAACAACCCCTGCTGGCACTCCAGCACCTGCGGGCGAGGCAGCGCCTAC
ACCCGAGAACCCTGTCGCCCCTACCGCACCGGACCAGACATCGATGCCTG
CGGAAGTGACAATGCCGATGCCCACCACACCTGGTGCTACTCCGAGCGCG
CCCTCGCCACCCGGGACACCCGCCCCGGCTGACACTGTGACCCCGGGCCC
GTCTCCATCCCCCGTGAGCATGCCGACGCCCACCACACCTGGTGCTACTT
GACAATGCCGATGCCCACCACACCTGGTGCTACTCCGAGCGCGCCCTCGC
CACCCGGGACACCCGCCCCGGCTGACACTGTGACCCCGGGCCCGTCTCCA
TCCCCCGTGAGCATGCCGACGCCCACCACACCTGGTGCTACT
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