mRNA_L-elsbetiae_contig13864.2911.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13864.2911.1
Unique NamemRNA_L-elsbetiae_contig13864.2911.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13864.2911.1 vs. uniprot
Match: D7G8V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V7_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 4.220e-60
Identity = 111/162 (68.52%), Postives = 126/162 (77.78%), Query Frame = 1 
Query:  217 MMRGSSGGDFEVTGIPVTRSMIFWEASEVCKWLDHLQFDQQIKSEVYQKRVGGATLISMVNSDRLGEIGVTRLNRVQLLWNLERRIDKGDKKAGTAVDPRVFLGVEEGMAELQQRRDXXXXXXXXXXXXTRTQYTRYSDNPDSGAAEQQMVRAMPSPKRVAG 702
            MMR SSGGDF  T IP+TRS+IFWE +EV +WL+ LQFD Q  S V++KRV GA LISMVNSDRLGE+G+TRL R QLLWNL+RRIDKGD+KAGTAVDP VFLGVEE + EL+Q          XXXXX    Y  YSDNPDS A++QQMVRAMPSPKRV G
Sbjct:    1 MMRDSSGGDFAATVIPITRSLIFWECTEVRRWLEALQFDSQTLSAVFEKRVSGANLISMVNSDRLGELGITRLTRAQLLWNLKRRIDKGDQKAGTAVDPTVFLGVEERLEELEQ---------GXXXXXXNASYRPYSDNPDS-ASQQQMVRAMPSPKRVGG 152
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13864.2911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8V7_ECTSI4.220e-6068.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13864contigL-elsbetiae_contig13864:733..4444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size707
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13864.2911.1prot_L-elsbetiae_contig13864.2911.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13864 949..4444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.7413266-UTR-L-elsbetiae_contig13864:732..9481622815544.7413266-UTR-L-elsbetiae_contig13864:732..948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13864 733..948 +
1691682950.8257623-UTR-L-elsbetiae_contig13864:732..9481691682950.8257623-UTR-L-elsbetiae_contig13864:732..948Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13864 733..948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.7563934-CDS-L-elsbetiae_contig13864:948..10711622815544.7563934-CDS-L-elsbetiae_contig13864:948..1071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 949..1071 +
1691682950.8363848-CDS-L-elsbetiae_contig13864:948..10711691682950.8363848-CDS-L-elsbetiae_contig13864:948..1071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 949..1071 +
1622815544.767128-CDS-L-elsbetiae_contig13864:1916..20421622815544.767128-CDS-L-elsbetiae_contig13864:1916..2042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 1917..2042 +
1691682950.8461318-CDS-L-elsbetiae_contig13864:1916..20421691682950.8461318-CDS-L-elsbetiae_contig13864:1916..2042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 1917..2042 +
1622815544.7784035-CDS-L-elsbetiae_contig13864:3056..32451622815544.7784035-CDS-L-elsbetiae_contig13864:3056..3245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 3057..3245 +
1691682950.855539-CDS-L-elsbetiae_contig13864:3056..32451691682950.855539-CDS-L-elsbetiae_contig13864:3056..3245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 3057..3245 +
1622815544.791564-CDS-L-elsbetiae_contig13864:4393..44441622815544.791564-CDS-L-elsbetiae_contig13864:4393..4444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 4394..4444 +
1691682950.8712802-CDS-L-elsbetiae_contig13864:4393..44441691682950.8712802-CDS-L-elsbetiae_contig13864:4393..4444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13864 4394..4444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13864.2911.1

>prot_L-elsbetiae_contig13864.2911.1 ID=prot_L-elsbetiae_contig13864.2911.1|Name=mRNA_L-elsbetiae_contig13864.2911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MMRGSSGGDFEVTGIPVTRSMIFWEASEVCKWLDHLQFDQQIKSEVYQKR
VGGATLISMVNSDRLGEIGVTRLNRVQLLWNLERRIDKGDKKAGTAVDPR
VFLGVEEGMAELQQRRDGSSSGGGGGGGGTRTQYTRYSDNPDSGAAEQQM
VRAMPSPKRVAGS
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mRNA from alignment at L-elsbetiae_contig13864:733..4444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13864.2911.1 ID=mRNA_L-elsbetiae_contig13864.2911.1|Name=mRNA_L-elsbetiae_contig13864.2911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3712bp|location=Sequence derived from alignment at L-elsbetiae_contig13864:733..4444+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGAGCAATTATCGACGTCTAGCTGGCGCTCCTGCTTGTGGAGCCGAC
CCCGATATCGCCTCAACCACGAACAAGAAAAAAACAAAGCGTCCCAGAAC
ATTCTCTGTCATCGTAGATCCTCCATTCCTCGCAAACTGGAGCTCTGGAA
AAAGCGCGAGCAAACCAAGGCAGCGTTTAGTGTGCCTGAGCTGAGGAGAA
GGCAGGAGGGGAGGCAATGATGCGGGGTAGCAGCGGGGGAGACTTCGAGG
TGACGGGCATCCCCGTCACCCGGAGTATGATATTCTGGGAGGCCTCCGAG
GTCTGCAAGTGGCTAGACCATCTTCAGTTCGATCAGCAGGTGAAAGGGTG
TTTAGTGGAAGAGAGATGTGTGTGTGTGTGTCGTCTGTGCGTGTGTGCGT
GAGGCGCGTGCGCGGTCTCAACTGCCGCCACGTCTGTGTTGTGCACGCAC
AAAGTCGGTGTTTTTGTGCAGCAGCGTTGGGCGGGCATCACAAGCCGCAT
AGTCCTGCATAATGGAAGATACATCAACCGCCGTGTCGAATGCGCGAAGG
GACACTTCCATGAGAGTCCAGCAGGCACCGGCTTCCATGACCCAGCGGGG
TCCTTCTGTTGACTCCGTCGTTCGCAAAACGTGTGTTGATCTCGGCCGGG
TTGCTCGTTGTAGGGTTAGGCATCCGACGACAGGAACAAACTACGTAGCT
ACCGGCCTTATGTAGACTATGTACACGATCTCTTGGTTTCCCAAAGTATT
TAGACTATAAACCGTCTGTGCCTTGTGCTGCGTAGATATTGTATGGTTAC
TCGTTTCGAGTCTGCACGGCGGTATTCGTGCCATATTGCCTATTGCCTGC
CCAAAACCAAATAATTTATTAATTAATTAAAAAAAAGACACATATATAAT
TATATACTCCTATATGTGCAATACATATAAGAACACGACCACTGCTGCTG
TACGTAGATTGCAGTATTCACCGGCCCGCTTACAGAAACCAGCACACGTT
CTTCGCGAGACCAGAGCCAATCCTCCCCGCCTCGACATGTGGAAGATGTT
AGGCTGGCCTTCTTTCAAAGGAGTTGTATGTACGTTCCATGTGTATATTT
TTAGGAGCCGCGCCGGTACCACTACTACTGTATTGTGCAGGGCGTGGATC
CACATCGAACGCTCGTTGTTTGACAACACTGCAGATAAAGTCGGAAGTCT
ACCAGAAACGAGTCGGCGGCGCCACCCTCATCTCCATGGTAAACTCCGAC
CGCCTGGGCGAGATCGGCGTCACCAGGCTCAACCGGGTGCAGCTCCTGTG
GAACCTCGAGGTGTGTACATAAACGTGTACATGCATGTGCTGTTTGCGCT
CTCTGCACCGCCCCGTGCTTGGAGTAACACTTGCCTTACCATACAAGCAT
GGGTCCTGTGAGACATTGAGGTGCACACCATAGGTGACACAAGATACCAC
CCCCCCCCTGGCCAGGTTTTTCAAGCTCGATTCCTCCCCAGCAAGAAGAA
GAGTGCCAGTGCCGAAACGGGGTTGGCGTTGGAAAGATCTAGTCGAGGGC
TGTCCGAAAATGTATCGTTTGGTGCTGGCACCCTCTTCGTTACGGAGTAA
TGAAGCTCTAAGATTCGGTCCAGGGGGTGTGGCATCTTGTGTCACCTAAA
TACGGTATTTTGCTTGTGCTCGCTGCATACACCGCCCCGGTGCTTACCTC
TAATCATGTGCAGGCATGCGTGCAAACGCTGGCCCCCGTGTATGCGCTGC
ATTGTGTGCGCTAAGTCCATGTAGATACCGATGAAGCGTTTTGGTCGATC
GCGTCGCGTTTGGAACAACCGCGTCACAACCTCGCCCACGCCTACAATGA
TCCTCTTGTGCCTTATGTCCGTGCGGTGGAGCTAGCTAGCTGCCTGCGTA
GAGCGCACATGCACTCGCGCACGGGACGAATACGAGCGTATCGCACAACC
GCTTCAGATCAACACACACACACGAAACGTGCACTGTTGCTGTCCACTCT
TTGAAGCCCATCTCTCCGCGACGCTCTCCCCGCATCGGTATTTCTGCCAC
ACACCTGCCCCGAGTCGTCCACGCAACCCCCAACCTAACCGAAACCAGCG
GCGCATCAAGAAGCGCGATAAAAAGGCCGGCCACCACCGTGGGACCCGCG
CAAAAGCATCCACGTAACCCCCCAAGTACCACATAACGCTTCCCCCAACC
AAAATACCGAAACCAGCAGTGCACCAACAGAGGCGAGAAAGCGAGCCGCA
CATAACACACATACCCATGACACACGACCCCCCCCCCCCATCATCCACGT
AACCTCCAACGAAACCGAAACCAGCGGCGCATCGACAAGGGCGACAAGAA
GGCCGGCACCGCCGTGGACCCGCGCGTGTTTCTGGGTGTTGAGGAGGGCA
TGGCGGAGCTCCAGCAACGGCGAGACGGGAGCAGCAGCGGCGGCGGCGGC
GGCGGCGGCGGGACCAGAACGCAGTACACACGATACAGCGACAACCCGGA
TAGCGGTGCAGCGGTGAGTGCGTTGTTGTTGCGTAGAGGACTGGAGGGGG
CACGGTCTGACAAGCGCTGGCTGGTGGGCTGAGAGTCCCACGACCGTGGC
ACCGTGACCCACGCACACAGGTCGCGAGCTGTTGTCGTCAGCGTGGCGGT
TGTGTGCGGTTGTACGTGCATGTGTAGCTGGCCGTTTGGTAGGAGTGTTT
GGTGTTGGTTTTCTTTTTGTGTGGTGCGATGTCACGACGAGACACGACAC
GAAATGACAAGGCAGAGTTCTCGGCGATACAATGCGATATATTGCGGTGC
AATGCGGTGCAATGCGGTGCAATGCAAATGCAATGCAAATGCAATGCAAA
TGCAATGCAAATGCAATGCAAATGCAATGCAAATGCAATTCGATGTACTG
TAAATGCGATTCGGTGCGATGCAGTAGAATGCGATGCAATGAGACAAGAT
GCGACACGGCAGGGTCATCTCGGCGATATGTGTTATTTCGTTCTCGGCCC
CCGCCCTACTCTAGCCTCCCTCTTTCTTGAGGTGGTGCGGACAGCCCTGC
AACGGAATATGACGAGTTGAAGATGTGCGATGCAATGCAATGCGATGGAT
TTCAGTAATATGATGGAAAGCCAACCATGACATGCCATGCCATGCGGTGG
AATGCGATGCGATCCCACCCCATGCCATGTTGTGCAGCTGTGCACGCCAA
CTGCCGTAGGTGACACAAGATACCACCCCCCCCTGGACATATTTTCAAAG
CTCGATTCCTCGCCAGCAAGAAGAAGAGTGCCAGTGCCGAAATGGGGTGG
CGTTGTAAAGATCTAGTCGAGGGATGCCCAAACATTTTTCGTTTGGTGCT
GGCACCCTCTTCGTCGCCGAGTAATGGGGCTTTAAAAAGATGTCCAGGGG
GGGTGGCATCTTGTGTCATCTACGGCACCTATGAGCAGACTTGGTCCGTG
ACGAGGGTTGTTACGCGAAGGGCGACAACAACGAAAAGCGCAGAACCGCC
TCGTCTTGTCCTCCACGAATCAGCAGCTAGCTGCCGCAGACTGACTCTTA
CAGCCGCCGTTTAGGTATACTCTTGCATGGGTGGAACAACAAGAGAGCCT
AAATGGCTGGACGGATCCCCCCGCCCCACTGCTGGTGTCGCCCTCTTCGC
TGTGACAACAGGAGCAGCAGATGGTGCGGGCAATGCCCAGCCCGAAAAGG
GTCGCGGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13864:733..4444+

>mRNA_L-elsbetiae_contig13864.2911.1 ID=mRNA_L-elsbetiae_contig13864.2911.1|Name=mRNA_L-elsbetiae_contig13864.2911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig13864:733..4444+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCGGGGTAGCAGCGGGGGAGACTTCGAGGTGACGGGCATCCCCGT
CACCCGGAGTATGATATTCTGGGAGGCCTCCGAGGTCTGCAAGTGGCTAG
ACCATCTTCAGTTCGATCAGCAGATGATGCGGGGTAGCAGCGGGGGAGAC
TTCGAGGTGACGGGCATCCCCGTCACCCGGAGTATGATATTCTGGGAGGC
CTCCGAGGTCTGCAAGTGGCTAGACCATCTTCAGTTCGATCAGCAGATAA
AGTCGGAAGTCTACCAGAAACGAGTCGGCGGCGCCACCCTCATCTCCATG
GTAAACTCCGACCGCCTGGGCGAGATCGGCGTCACCAGGCTCAACCGGGT
GCAGCTCCTGTGGAACCTCGAGATAAAGTCGGAAGTCTACCAGAAACGAG
TCGGCGGCGCCACCCTCATCTCCATGGTAAACTCCGACCGCCTGGGCGAG
ATCGGCGTCACCAGGCTCAACCGGGTGCAGCTCCTGTGGAACCTCGAGCG
GCGCATCGACAAGGGCGACAAGAAGGCCGGCACCGCCGTGGACCCGCGCG
TGTTTCTGGGTGTTGAGGAGGGCATGGCGGAGCTCCAGCAACGGCGAGAC
GGGAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGACCAGAACGCAGTA
CACACGATACAGCGACAACCCGGATAGCGGTGCAGCGCGGCGCATCGACA
AGGGCGACAAGAAGGCCGGCACCGCCGTGGACCCGCGCGTGTTTCTGGGT
GTTGAGGAGGGCATGGCGGAGCTCCAGCAACGGCGAGACGGGAGCAGCAG
CGGCGGCGGCGGCGGCGGCGGCGGGACCAGAACGCAGTACACACGATACA
GCGACAACCCGGATAGCGGTGCAGCGGAGCAGCAGATGGTGCGGGCAATG
CCCAGCCCGAAAAGGGTCGCGGGGAGCGAGCAGCAGATGGTGCGGGCAAT
GCCCAGCCCGAAAAGGGTCGCGGGGAGC
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