mRNA_L-elsbetiae_contig13863.2910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13863.2910.1
Unique NamemRNA_L-elsbetiae_contig13863.2910.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13863.2910.1 vs. uniprot
Match: A0A6H5KQ06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ06_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.040e-27
Identity = 63/182 (34.62%), Postives = 109/182 (59.89%), Query Frame = 1 
Query:  760 IVTENTTVEQLHDIVGPASTMAKAGLCGILLKDYVPNV-------TVSNSGASDSKPTTRPGEKKTNGIVNYIFASYSYAFIGDTKKQFSDGEEPTEHNNILLAIAKKIYPQARAGHKNWMSSLIGGIGTGRSYMHVDTRGAVAGICIKVLQ-AVDDEGGYLFITDIFRGAREYLQKMDVND 1281
            IV   +T ++LH I+ PA+ + KA LCG+L+    P++       + + SG + S+   + GE+ TNG++N I  +YSYAF+GD KK+FS+G+ P+  NN  +A+   +YP+A++G K W    I G+ T R+ +H D R A+  +C+ +++ A         + D+FR A+  ++ M++ D
Sbjct:   84 IVDRASTADELHRIIKPATPLVKAALCGMLMYKTAPSMYSAIKPDSDNGSGNNGSREKVK-GERSTNGVINRIMVTYSYAFVGDAKKRFSEGKLPSARNNPFVAVGAMVYPKAQSGAKTWEREFIDGVTTARAGVHSDARKAMVTLCLHLVRIAAKSHPDLRHLPDLFRAAKAAMRDMELKD 264
[Close]
BLAST of mRNA_L-elsbetiae_contig13863.2910.1 vs. uniprot
Match: A0A6H5KJF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.810e-18
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 1 
Query:  760 IVTENTTVEQLHDIVGPASTMAKAGLCGILLKDYVPNV-------TVSNSGASDSKPTTRPGEKKTNGIVNYIFASYSYAFIGDTKKQFSDGEEPTEHNNILLAIAKKIYPQARAGHKNW 1098
            IV   +T ++LH I+ PA+ + KA LCG+L+ +   ++       + + SG + S+   + GE+ TNG++N I  +YSYAF+GD KK+FS+G+ P+  NN  +A+   +YP+A++G K W
Sbjct:  216 IVDRASTADELHRIIKPATPLVKAALCGMLMYETAHSMYSAIKPDSDNGSGNNGSREKVK-GERSTNGVINRIMVTYSYAFVGDAKKRFSEGKLPSARNNPFVAVGAMVYPKAQSGAKTW 334
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13863.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ06_9PHAE4.040e-2734.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJF6_9PHAE1.810e-1838.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13863contigL-elsbetiae_contig13863:532..3543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2376
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13863.2910.1prot_L-elsbetiae_contig13863.2910.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13863 1400..2724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.6343715-UTR-L-elsbetiae_contig13863:531..12311622815544.6343715-UTR-L-elsbetiae_contig13863:531..1231Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 532..1231 -
1691682950.7673132-UTR-L-elsbetiae_contig13863:531..12311691682950.7673132-UTR-L-elsbetiae_contig13863:531..1231Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 532..1231 -
1622815544.6484272-UTR-L-elsbetiae_contig13863:1268..13991622815544.6484272-UTR-L-elsbetiae_contig13863:1268..1399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 1269..1399 -
1691682950.7758925-UTR-L-elsbetiae_contig13863:1268..13991691682950.7758925-UTR-L-elsbetiae_contig13863:1268..1399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 1269..1399 -
1622815544.706582-UTR-L-elsbetiae_contig13863:2724..35431622815544.706582-UTR-L-elsbetiae_contig13863:2724..3543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 2725..3543 -
1691682950.8159125-UTR-L-elsbetiae_contig13863:2724..35431691682950.8159125-UTR-L-elsbetiae_contig13863:2724..3543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13863 2725..3543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.6624784-CDS-L-elsbetiae_contig13863:1399..18421622815544.6624784-CDS-L-elsbetiae_contig13863:1399..1842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 1400..1842 -
1691682950.7841194-CDS-L-elsbetiae_contig13863:1399..18421691682950.7841194-CDS-L-elsbetiae_contig13863:1399..1842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 1400..1842 -
1622815544.6789305-CDS-L-elsbetiae_contig13863:2186..24151622815544.6789305-CDS-L-elsbetiae_contig13863:2186..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 2187..2415 -
1691682950.7949321-CDS-L-elsbetiae_contig13863:2186..24151691682950.7949321-CDS-L-elsbetiae_contig13863:2186..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 2187..2415 -
1622815544.6938221-CDS-L-elsbetiae_contig13863:2670..27241622815544.6938221-CDS-L-elsbetiae_contig13863:2670..2724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 2671..2724 -
1691682950.8076797-CDS-L-elsbetiae_contig13863:2670..27241691682950.8076797-CDS-L-elsbetiae_contig13863:2670..2724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13863 2671..2724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13863.2910.1

>prot_L-elsbetiae_contig13863.2910.1 ID=prot_L-elsbetiae_contig13863.2910.1|Name=mRNA_L-elsbetiae_contig13863.2910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
MAKAGLCGILLKDYVPNVTVSNSGASDSKPTTRPGEKKTNGIVNYIFASY
SYAFIGDTKKQFSDGEEPTEHNNILLAIAKKIYPQARAGHKNWMSSLIGG
IGTGRSYMHVDTRGAVAGICIKVLQAVDDEGGYLFITDIFRGAREYLQKM
DVNDPASGRSETLIVREYKVWPLTRPLGLQARVQGNAKYTFCEVPECCLP
AYTLIYLFYAALLSTQIGISCFLNNATISPKNTRQQEANGE*
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mRNA from alignment at L-elsbetiae_contig13863:532..3543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13863.2910.1 ID=mRNA_L-elsbetiae_contig13863.2910.1|Name=mRNA_L-elsbetiae_contig13863.2910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3012bp|location=Sequence derived from alignment at L-elsbetiae_contig13863:532..3543- (Laminarionema elsbetiae ELsaHSoW15)
AGGAATCGGGTGAAGAGGACCTCCCCTCGGAATACGAACCGTCAGACCCG
GGTGTGGCGAGCGACGACGAGGACACCTGCTCTCCCTTCTCCGAGTCGAT
GAGCCCTGACATGCTTGCGACGCAAGGCCAGGCGAAGAGAAAGAGGGCTG
GGCGTGCGACTCGCCTACCGGCCCGCCTTAGTGACACCGGCGTCCAGCTC
ACGGGTAGCGTCCGTTCTTCTGGCGCCGGCATGAACCGACCCTCCTCCGG
CGTGACTGCAGGGATCTCTGCGCGGTGGCGCGGGAGGGGCGTCATCGCAG
CCTCACCGCCCTACCCAGACTGCACGTTCTGCCCGTGCTGCCGCCGCTGC
TGCCCCTGCCGCTGCTGCCGCCCGGACATCGTCCTCGGCTGGCCACTCCT
CTGCATGGAGGAGCACCCGTCACCTCGCCGGCGACGGCGTGGCAGCCCGT
TCCGGAAACAACAATGCGGAAGCGGCGGGGTCTACCCGGCGTTTCTCCAT
CGGGACCGCTTCGGCCTCTCGTCAGGGTGTCTCCTCACACAGATGCCGTG
CGGCTGTAGCCTCCGGTCAGCGGGGTGCGCCCTCCCGGGGCGTGCTCACC
GGCAACAGGGCCGCACCTGCAAGTGGCGTTTCCGCCGGGGCGTCCGGAGC
CGGTACCTTCGGCCGCATCGGCGGGGGGGCGTCTGGAGCGGCTATCTTCA
GCCGCATCGGCGCCGGAGCTACGCGGGAGGCTAGCCAGACACAGCGCGAA
ACTCCAAGCATCGTCACCGAAAATACGACAGTGGAGCAGCTACACGACAT
CGTCGGGCCCGCCTCTACCATGGCGAAGGCGGGGCTGTGTGGTATCCTTC
TCAAGGACTACGTTCCCAACGTGGTGAGTACACTCCACCAGTTGGAAAAC
GTGGACCGGATTTAAGAAGACCATTTGTTCACTACAATAAACCGCAGCTT
TGAAAGGCTCGGTTACCTTTACGTACATCGACTCCTGTAAGTTGTACTCC
ACAGTTTTCGAACCTTCGCGAGAAACCGAGAGACGTTGGACTCCTAAAAT
TGAAGCCCGTTCGCCCCCCACTGACGCCCCCATCGTACAACCCCCCCCCC
TATCCCATCCGGCGTCGCCCATCGCCAGACCGTGTCCAACTCAGGTGCCA
GCGATAGCAAGCCGACTACGCGCCCGGGCGAGAAGAAGACCAACGGCATA
GTCAACTACATTTTCGCCTCCTACAGCTACGCGTTTATCGGGGACACTAA
GAAGCAATTTTCCGATGGCGAGGAACCGACCGAGCACAACAATATCTTGC
TCGCCATCGCCAAGAAGATCTACCCACAGGCTCGGGCCGGCCACAAGAAC
TGGATGAGTAAGTAACCTCAGCAGTGCGAACGCTTGACGTCTTGAGCCCG
TACTACAGCATTGTGGTGGCGGTGTTACATTATTATCTAGTACACTCCTC
TATATTTATATATGTCGTGCACACCTTTCTTCCTCCAACTGTTGAAACAC
ACAGCCCTTGGCAAAGTATGAAATGCTGCCGGAACAAACGTGCACGCACG
TGCGCCTATTTTAACACGCTAGGCTAGCAGCTTTATCACCGCGTGTGGGC
AACGAACGCCTGTGCTGTCTACGCCACCCACGGTTTCCCTCCTGATTACA
TCTCCTTTTTGCCTGCTCGTGTTGTCCGTGTCCCCTATTCGCTGCCCACA
GGTTCTTTAATCGGTGGCATCGGAACGGGTCGGTCCTACATGCACGTTGA
CACACGGGGCGCTGTTGCCGGCATCTGCATCAAGGTCCTCCAGGCGGTCG
ACGACGAGGGCGGCTACCTGTTCATCACGGACATTTTCCGTGGGGCAAGA
GAGTACCTCCAGAAGATGGACGTCAACGACCCGGCAAGTGGTCGTAGTGA
AACTCTAATCGTCAGAGAGTACAAGGTGTGGCCGCTTACGCGGCCGCTTG
GATTGCAAGCGAGAGTCCAAGGCAATGCCAAATATACCTTCTGTGAAGTA
CCCGAGTGCTGCCTACCTGCTTATACATTAATCTATCTTTTCTACGCTGC
GCTGTTGTCGACACAAATCGGCATCAGTTGCTTTTTGAACAATGCAACAA
TATCTCCGAAAAACACTCGTCAGCAGGAGGCGAATGGCGAATAGCTAGCT
TTCACCAGCGACCGCATTGAAGTACGCAAGCAGAATTGTACCCTACTTAT
TTAAAGGCGCTGCCGCGAGAGTATACCCGGGTGCACCATATTACACACGT
GTGCATCTGGAGTGCCTCGCAGGGTGTCGTTCCGCTCGCGCTCGACAGTT
GCACGCGAGAAGAGTCAATTTTCCGAAAATAACATATAGAAGTAGATACG
CATGAAGGCATGGAAGAGAGAGAGATTAGCAATTGGAGATTAGAGAGAAC
AGACCTGCCCTCGTCTGGCCGCTTAAGCAGCTCCGCTTTATGATTGAAAG
CGATTCCAAGGCAATGGTAAATGTCTACTGCCTTCCTATGAAGTGCTGCT
GTTTTCAAAAGTAGATGTGTGTGACAATGGAAAAAACACAAATCAGCAGC
CTAGCAGTCAGCTTTTTTTATACTCTTCCGAAAAACACGCGTCAGCAGAG
AGGCCACCAGCGACCTCATTTTTTAGAGTGCACATAGAAACGATGCGCAA
GCAGAGCTACCCTCCTTGTATTTGACGGCGCTACATCAGCGAGTGTACTC
GCGTGTGCACAACAATACACAACCTGTGTACATGGTGGTAGTGCTTCGCA
GAGGGTACGCGCCCCGCACGCGCATTGACCCCTTCGGCAAATTAACGGAG
TTATATGTAATGCAGATCAGAGTCAAATTTCAAAATAATAAAAATTGATG
CCGAGCGTTGATTGAGCGTGTCAGACAGAAACAGAGGCGCTGCCGGCGCG
TGTGCTCAACAATATGCATGTGTACGTAAAGTGTCTTGAAGGAGGGTACA
TGCTTGGTTAACGCATTGCTCCCTTCGGTGCGTTCAACGCTGCTCGTGTC
AGGCCTGGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13863:532..3543-

>mRNA_L-elsbetiae_contig13863.2910.1 ID=mRNA_L-elsbetiae_contig13863.2910.1|Name=mRNA_L-elsbetiae_contig13863.2910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig13863:532..3543- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGGCGGGGCTGTGTGGTATCCTTCTCAAGGACTACGTTCCCAA
CGTGATGGCGAAGGCGGGGCTGTGTGGTATCCTTCTCAAGGACTACGTTC
CCAACGTGACCGTGTCCAACTCAGGTGCCAGCGATAGCAAGCCGACTACG
CGCCCGGGCGAGAAGAAGACCAACGGCATAGTCAACTACATTTTCGCCTC
CTACAGCTACGCGTTTATCGGGGACACTAAGAAGCAATTTTCCGATGGCG
AGGAACCGACCGAGCACAACAATATCTTGCTCGCCATCGCCAAGAAGATC
TACCCACAGGCTCGGGCCGGCCACAAGAACTGGATGAACCGTGTCCAACT
CAGGTGCCAGCGATAGCAAGCCGACTACGCGCCCGGGCGAGAAGAAGACC
AACGGCATAGTCAACTACATTTTCGCCTCCTACAGCTACGCGTTTATCGG
GGACACTAAGAAGCAATTTTCCGATGGCGAGGAACCGACCGAGCACAACA
ATATCTTGCTCGCCATCGCCAAGAAGATCTACCCACAGGCTCGGGCCGGC
CACAAGAACTGGATGAGTTCTTTAATCGGTGGCATCGGAACGGGTCGGTC
CTACATGCACGTTGACACACGGGGCGCTGTTGCCGGCATCTGCATCAAGG
TCCTCCAGGCGGTCGACGACGAGGGCGGCTACCTGTTCATCACGGACATT
TTCCGTGGGGCAAGAGAGTACCTCCAGAAGATGGACGTCAACGACCCGGC
AAGTGGTCGTAGTGAAACTCTAATCGTCAGAGAGTACAAGGTGTGGCCGC
TTACGCGGCCGCTTGGATTGCAAGCGAGAGTCCAAGGCAATGCCAAATAT
ACCTTCTGTGAAGTACCCGAGTGCTGCCTACCTGCTTATACATTAATCTA
TCTTTTCTACGCTGCGCTGTTGTCGACACAAATCGGCATCAGTTGCTTTT
TGAACAATGCAACAATATCTCCGAAAAACACTCGTCAGCAGGAGGCGAAT
GGCGAATAGGTTCTTTAATCGGTGGCATCGGAACGGGTCGGTCCTACATG
CACGTTGACACACGGGGCGCTGTTGCCGGCATCTGCATCAAGGTCCTCCA
GGCGGTCGACGACGAGGGCGGCTACCTGTTCATCACGGACATTTTCCGTG
GGGCAAGAGAGTACCTCCAGAAGATGGACGTCAACGACCCGGCAAGTGGT
CGTAGTGAAACTCTAATCGTCAGAGAGTACAAGGTGTGGCCGCTTACGCG
GCCGCTTGGATTGCAAGCGAGAGTCCAAGGCAATGCCAAATATACCTTCT
GTGAAGTACCCGAGTGCTGCCTACCTGCTTATACATTAATCTATCTTTTC
TACGCTGCGCTGTTGTCGACACAAATCGGCATCAGTTGCTTTTTGAACAA
TGCAACAATATCTCCGAAAAACACTCGTCAGCAGGAGGCGAATGGCGAAT
AG
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