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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1432 |
| Cds size | 957 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815544.540916-UTR-L-elsbetiae_contig13860:2770..2916 | 1622815544.540916-UTR-L-elsbetiae_contig13860:2770..2916 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 2771..2916 + |
| 1691682950.7217338-UTR-L-elsbetiae_contig13860:2770..2916 | 1691682950.7217338-UTR-L-elsbetiae_contig13860:2770..2916 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 2771..2916 + |
| 1622815544.5786743-UTR-L-elsbetiae_contig13860:4336..4366 | 1622815544.5786743-UTR-L-elsbetiae_contig13860:4336..4366 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 4337..4366 + |
| 1691682950.7491066-UTR-L-elsbetiae_contig13860:4336..4366 | 1691682950.7491066-UTR-L-elsbetiae_contig13860:4336..4366 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 4337..4366 + |
| 1622815544.592959-UTR-L-elsbetiae_contig13860:4562..4861 | 1622815544.592959-UTR-L-elsbetiae_contig13860:4562..4861 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 4563..4861 + |
| 1691682950.7588825-UTR-L-elsbetiae_contig13860:4562..4861 | 1691682950.7588825-UTR-L-elsbetiae_contig13860:4562..4861 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13860 4563..4861 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815544.5536873-CDS-L-elsbetiae_contig13860:2916..3723 | 1622815544.5536873-CDS-L-elsbetiae_contig13860:2916..3723 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13860 2917..3723 + |
| 1691682950.7295203-CDS-L-elsbetiae_contig13860:2916..3723 | 1691682950.7295203-CDS-L-elsbetiae_contig13860:2916..3723 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13860 2917..3723 + |
| 1622815544.566572-CDS-L-elsbetiae_contig13860:4186..4336 | 1622815544.566572-CDS-L-elsbetiae_contig13860:4186..4336 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13860 4187..4336 + |
| 1691682950.7377672-CDS-L-elsbetiae_contig13860:4186..4336 | 1691682950.7377672-CDS-L-elsbetiae_contig13860:4186..4336 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13860 4187..4336 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13860.2909.1 >prot_L-elsbetiae_contig13860.2909.1 ID=prot_L-elsbetiae_contig13860.2909.1|Name=mRNA_L-elsbetiae_contig13860.2909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=319bp
MCTEDRRTTAPGSDRLRRAVDAEASTDTEDRKATALASGRLGRQVRPRKK
AVRSWARDDDDGTESMMRKVAEHLMSKSSNAGGGGGDSAEVARLKNEVAG
LNEGQQQTNASLALLLQEVRASNAQQQQQQQQPGLVQQPGMGVSFAPPSF
GPGVSGLSGMPGFAAPFAPARQTGVAAGARGAPASAPGEDTQTSRRTGTR
EVRSGGVQSGVPRGQAAAVGIAPPGAGTRAPSHGGASSGGSAGGAAGPGS
GRPLCKGGRDAKRSTIRQPTSPNLGKSYYCCAVVGASNKCNFQQWIDTGA
TTSVSKKPWVPAMRPNSK* back to topmRNA from alignment at L-elsbetiae_contig13860:2771..4861+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig13860.2909.1 ID=mRNA_L-elsbetiae_contig13860.2909.1|Name=mRNA_L-elsbetiae_contig13860.2909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2091bp|location=Sequence derived from alignment at L-elsbetiae_contig13860:2771..4861+ (Laminarionema elsbetiae ELsaHSoW15)
CATCGGCACCAGCGAAGGGCAAGAAGCGGGATCGCGGCCAGTCTCATCAT
CGCCCTGGTCGTGGCGATTTGGACGTGGAAGAGGAAGATAATTTTTTTCC
CGTCGATATCGCGTCGTCGGGCGACGAGTCATTCGATGTTCTCGACATGT
GCACGGAGGACAGGAGGACTACTGCTCCCGGTAGCGACCGCCTCCGGAGG
GCGGTTGACGCCGAGGCATCGACTGACACGGAGGACAGGAAAGCAACCGC
TCTTGCTTCCGGGCGCCTGGGGCGGCAAGTTCGACCGCGCAAGAAGGCGG
TCAGATCGTGGGCGCGGGACGATGACGACGGCACGGAGAGCATGATGCGA
AAGGTGGCCGAACACCTCATGAGCAAGTCCAGCAACGCCGGCGGGGGTGG
GGGGGACTCAGCGGAAGTTGCCAGGCTCAAAAACGAGGTTGCCGGCCTCA
ACGAGGGGCAACAGCAGACAAATGCCAGCCTTGCGCTCCTCCTCCAAGAA
GTCCGTGCATCCAATGCGCAGCAGCAGCAGCAGCAGCAGCAGCCCGGGTT
AGTCCAGCAGCCCGGGATGGGGGTGAGTTTTGCCCCGCCCAGTTTCGGGC
CAGGTGTTAGTGGCCTCTCCGGCATGCCGGGGTTTGCCGCACCTTTCGCC
CCCGCCCGCCAAACCGGTGTTGCTGCCGGGGCTAGGGGTGCGCCGGCATC
AGCGCCGGGCGAGGATACCCAAACTTCAAGGCGGACGGGAACGAGGGAGG
TGCGCAGTGGCGGGGTGCAGTCAGGAGTGCCGCGTGGTCAGGCAGCAGCC
GTGGGGATTGCGCCGCCGGGAGCTGGAACCAGGGCGCCATCACACGGCGG
AGCGAGCTCTGGTGGAAGTGCAGGGGGGGCAGCGGGACCGGGTTCGGGCA
GGCCACTATGCAAGGGTGGCAGGGATGCGAAGAGGTCCACCATCCGGCAA
CCGGTGAGAGCTCAAAATTATATTTTAGTACCTTTTTCATATCCTGCACC
AGTTAGGCTCTGTCTCCGTTCGCACCTTTTTTTCTGTGTTTTTGGGAGAT
AGAGCAGCACATCTTTTTTTGGCATATGCTTTTTTACGTTTCACGCCTCC
TATTATGTAATTGGCGCCCCATTTTTTTTCTACCCCGCACCAAACGCGAC
AGCCTGACCCCCCAGCTCCCCGGCTCCCAAGATCGCGTTAGTGCCGTGCG
TGTGTTGTCGTCCTGCACATATATGTGTGCCGATACGCCCCCCTCGTCTT
GACCCACGACCCCAACTATTGGATATATATATATCTGCTGAGAAGAGAGG
GGCGATCGAACCGCCAAAAAAATAGGCGTGTAACAACAAAATTGGTTTCC
ACTGACCCATTCCCTCCTCTGCCTCTCTTCCCTCGGTTTCACACTCGAAC
CTTGCTTCCTGCACAGACCTCTCCAAACCTCGGCAAGTCCTACTACTGTT
GCGCGGTGGTCGGCGCGAGCAACAAGTGCAACTTCCAACAGTGGATTGAC
ACCGGGGCAACCACCTCTGTCAGCAAAAAGCCGTGGGTACCTGCGATGCG
CCCAAACTCAAAATGACGGGATCAGTTGAGCAGTAATGTTCTTAGGCGCG
CTGACTTTTGGACGATACGTGGAGCTGGCCTGCCTATTTTTTGGATCCGT
CTGGTTTCCGTAGTCAAGCTGCGAGGATGATGTGACCGCCGACCTATGCA
CCATTCGTCGTTTTTGTCGCTGCCCATGCCCGGGTCTCCTCGTGTCCGGC
TTTTATTTTTTTGTCGTCCTTTTTTGTGTATTTTGGGGGCGTTCATGACC
GTCTTTAGTGGCGAGGGTTCCGTGACTGCCGACCTACTGTGCACCATTCG
TCGTTGTTTTCGCTGCCCACGCCCGGATGTCCTCGTGTTCGGCTTTTGTT
GTTTTGTCGTCCTTTTTTGTGTATTTTGGGGGCGGTCGTGACCGTGTTTA
GTGGCGAGGCTCCGTGACTGCGGACCTACTATGCACCATTCGTCGTTGTT
TTCGCTGCCCACGCCCGGATGTCCTCGTGTTCGGCTTTTGTTGTTTTGTC
GTCCTTTTTTGTGTATTTTGGGGGCGATTGTGACCGTGTTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig13860:2771..4861+ >mRNA_L-elsbetiae_contig13860.2909.1 ID=mRNA_L-elsbetiae_contig13860.2909.1|Name=mRNA_L-elsbetiae_contig13860.2909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1914bp|location=Sequence derived from alignment at L-elsbetiae_contig13860:2771..4861+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCACGGAGGACAGGAGGACTACTGCTCCCGGTAGCGACCGCCTCCG
GAGGGCGGTTGACGCCGAGGCATCGACTGACACGGAGGACAGGAAAGCAA
CCGCTCTTGCTTCCGGGCGCCTGGGGCGGCAAGTTCGACCGCGCAAGAAG
GCGGTCAGATCGTGGGCGCGGGACGATGACGACGGCACGGAGAGCATGAT
GCGAAAGGTGGCCGAACACCTCATGAGCAAGTCCAGCAACGCCGGCGGGG
GTGGGGGGGACTCAGCGGAAGTTGCCAGGCTCAAAAACGAGGTTGCCGGC
CTCAACGAGGGGCAACAGCAGACAAATGCCAGCCTTGCGCTCCTCCTCCA
AGAAGTCCGTGCATCCAATGCGCAGCAGCAGCAGCAGCAGCAGCAGCCCG
GGTTAGTCCAGCAGCCCGGGATGGGGGTGAGTTTTGCCCCGCCCAGTTTC
GGGCCAGGTGTTAGTGGCCTCTCCGGCATGCCGGGGTTTGCCGCACCTTT
CGCCCCCGCCCGCCAAACCGGTGTTGCTGCCGGGGCTAGGGGTGCGCCGG
CATCAGCGCCGGGCGAGGATACCCAAACTTCAAGGCGGACGGGAACGAGG
GAGGTGCGCAGTGGCGGGGTGCAGTCAGGAGTGCCGCGTGGTCAGGCAGC
AGCCGTGGGGATTGCGCCGCCGGGAGCTGGAACCAGGGCGCCATCACACG
GCGGAGCGAGCTCTGGTGGAAGTGCAGGGGGGGCAGCGGGACCGGGTTCG
GGCAGGCCACTATGCAAGGGTGGCAGGGATGCGAAGAGGTCCACCATCCG
GCAACCGATGTGCACGGAGGACAGGAGGACTACTGCTCCCGGTAGCGACC
GCCTCCGGAGGGCGGTTGACGCCGAGGCATCGACTGACACGGAGGACAGG
AAAGCAACCGCTCTTGCTTCCGGGCGCCTGGGGCGGCAAGTTCGACCGCG
CAAGAAGGCGGTCAGATCGTGGGCGCGGGACGATGACGACGGCACGGAGA
GCATGATGCGAAAGGTGGCCGAACACCTCATGAGCAAGTCCAGCAACGCC
GGCGGGGGTGGGGGGGACTCAGCGGAAGTTGCCAGGCTCAAAAACGAGGT
TGCCGGCCTCAACGAGGGGCAACAGCAGACAAATGCCAGCCTTGCGCTCC
TCCTCCAAGAAGTCCGTGCATCCAATGCGCAGCAGCAGCAGCAGCAGCAG
CAGCCCGGGTTAGTCCAGCAGCCCGGGATGGGGGTGAGTTTTGCCCCGCC
CAGTTTCGGGCCAGGTGTTAGTGGCCTCTCCGGCATGCCGGGGTTTGCCG
CACCTTTCGCCCCCGCCCGCCAAACCGGTGTTGCTGCCGGGGCTAGGGGT
GCGCCGGCATCAGCGCCGGGCGAGGATACCCAAACTTCAAGGCGGACGGG
AACGAGGGAGGTGCGCAGTGGCGGGGTGCAGTCAGGAGTGCCGCGTGGTC
AGGCAGCAGCCGTGGGGATTGCGCCGCCGGGAGCTGGAACCAGGGCGCCA
TCACACGGCGGAGCGAGCTCTGGTGGAAGTGCAGGGGGGGCAGCGGGACC
GGGTTCGGGCAGGCCACTATGCAAGGGTGGCAGGGATGCGAAGAGGTCCA
CCATCCGGCAACCGACCTCTCCAAACCTCGGCAAGTCCTACTACTGTTGC
GCGGTGGTCGGCGCGAGCAACAAGTGCAACTTCCAACAGTGGATTGACAC
CGGGGCAACCACCTCTGTCAGCAAAAAGCCGTGGGTACCTGCGATGCGCC
CAAACTCAAAATGAACCTCTCCAAACCTCGGCAAGTCCTACTACTGTTGC
GCGGTGGTCGGCGCGAGCAACAAGTGCAACTTCCAACAGTGGATTGACAC
CGGGGCAACCACCTCTGTCAGCAAAAAGCCGTGGGTACCTGCGATGCGCC
CAAACTCAAAATGA back to top
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