mRNA_L-elsbetiae_contig1386.2908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1386.2908.1
Unique NamemRNA_L-elsbetiae_contig1386.2908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1386.2908.1 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.560e-41
Identity = 99/153 (64.71%), Postives = 109/153 (71.24%), Query Frame = 1 
Query:    1 GYVDSGSPPPVAFGMPEPAPYDLGGGGGDEQFXXXXXXXXXXXXXXXXXXXXGEPFXXXXXXXXXXXXXSGE--PGMPLQASSTPYQSKPTDPYSLEETAGTMETAQSQFDAAVKERADQEVAKAAEVKKLAEEELDGFYDGRTDEVLQRSPR 453
            G+VD+GSPPPVA+GM E A YDLGGGGG +QF                    G   X   XXXXXXXXX G+   G+PLQASSTPYQ KPTDP SLEE AG ME AQSQFDA VKERA++E AKAAEVK+LAEEELDGFYDGRTDEV +R  R
Sbjct:   29 GFVDAGSPPPVAYGMQETAAYDLGGGGGGDQFGVVGDGEQFGG---------GXXXXEGLXXXXXXXXXXGDHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQAR 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1386.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ2_ECTSI1.560e-4164.71Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1386contigL-elsbetiae_contig1386:25356..26576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClathrin light chain
Ec32 orthologEc-01_005240.1
Exons3
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1386.2908.1prot_L-elsbetiae_contig1386.2908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1386 25356..26576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.4775999-CDS-L-elsbetiae_contig1386:25355..255731622815544.4775999-CDS-L-elsbetiae_contig1386:25355..25573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 25356..25573 +
1691682950.6879914-CDS-L-elsbetiae_contig1386:25355..255731691682950.6879914-CDS-L-elsbetiae_contig1386:25355..25573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 25356..25573 +
1622815544.4898636-CDS-L-elsbetiae_contig1386:25660..256761622815544.4898636-CDS-L-elsbetiae_contig1386:25660..25676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 25661..25676 +
1691682950.6997902-CDS-L-elsbetiae_contig1386:25660..256761691682950.6997902-CDS-L-elsbetiae_contig1386:25660..25676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 25661..25676 +
1622815544.5044136-CDS-L-elsbetiae_contig1386:26357..265761622815544.5044136-CDS-L-elsbetiae_contig1386:26357..26576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 26358..26576 +
1691682950.712601-CDS-L-elsbetiae_contig1386:26357..265761691682950.712601-CDS-L-elsbetiae_contig1386:26357..26576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 26358..26576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1386.2908.1

>prot_L-elsbetiae_contig1386.2908.1 ID=prot_L-elsbetiae_contig1386.2908.1|Name=mRNA_L-elsbetiae_contig1386.2908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
GYVDSGSPPPVAFGMPEPAPYDLGGGGGDEQFGGGGGDQFGGGGGGDQFG
GGGEPFGGGGEQFGGGGGGSGEPGMPLQASSTPYQSKPTDPYSLEETAGT
METAQSQFDAAVKERADQEVAKAAEVKKLAEEELDGFYDGRTDEVLQRSP
R
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mRNA from alignment at L-elsbetiae_contig1386:25356..26576+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1386.2908.1 ID=mRNA_L-elsbetiae_contig1386.2908.1|Name=mRNA_L-elsbetiae_contig1386.2908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1221bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:25356..26576+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTATGTTGACTCGGGATCGCCACCACCGGTAGCGTTCGGCATGCCGGA
GCCCGCCCCGTATGATCTCGGCGGCGGCGGCGGCGACGAGCAGTTCGGCG
GCGGCGGCGGAGACCAATTCGGTGGTGGCGGCGGCGGAGACCAATTCGGC
GGCGGCGGAGAGCCATTCGGCGGCGGCGGGGAGCAGTTTGGCGGCGGGGG
GGGCGGCAGCGGCGAGCCGTTTGGGATGGGCGGCAGCGGCGAGCCGTTTG
GGATGGGCGGCGACGGCGAACAGCTCGGAGGCGGAGGCGCAGAGGACCAG
TTCAGCGGAATGCCGCTGCAGGTGGGTGGCAGCGAACCAAATATAACACC
TTCGATACACAGTAGTGCGCTGTATGAGGTACCGGTCCGTACCCGGGTAA
CCAACCGTCTCCATTCTGCGCACATAACTTGACTCTATCTACCACCATTT
ATGGCAGATTGATGCAACTACGGGCGGAGATATCCAGATAGGTCGGCGTT
GAATTGCCCGCTGGGCGTGCGTGACGGCGAATGAGAGACAGACAGACAGA
CAGAGATACTTATTTGTGTCATATCCTTGAAAAACGAAACCTAATCCGGC
CCGCAGCTCCCACGCTTTAGCCCATCACCCCCCATTCGCACCATAGATTC
TTCACACGGCCACGGTATACATCGCCACCCCATCCCGCCCACCTCAAGTA
CAGCCGTATGTATTCCCTCCGTCTTCGACATCAGACAGCGGTTGGCACAC
GGTTCCAAAGTATCAGAATAAAGAGCATCGCCCCGCTCTGTTGTAAATTG
TAACTCATCCTGATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCC
CCCCCCCCCCCCCCACCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCAACATCNNNNGAAAAAAGAGCATCGCCCCGCTCTGTT
GTAAATTGTAACCCATCCTGCCCCCCCCCCCCCCCTCCCCACGGTCTCTC
AGGCTTCGTCGACGCCTTACCAATCCAAACCCACCGACCCGTACAGCCTC
GAGGAAACAGCGGGGACGATGGAGACGGCGCAGAGCCAGTTTGACGCGGC
GGTAAAGGAGAGGGCCGACCAGGAGGTGGCCAAGGCGGCGGAGGTGAAAA
AGCTGGCGGAGGAGGAGCTCGATGGCTTCTACGACGGGCGAACCGACGAG
GTGCTGCAGCGGAGCCCCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1386:25356..26576+

>mRNA_L-elsbetiae_contig1386.2908.1 ID=mRNA_L-elsbetiae_contig1386.2908.1|Name=mRNA_L-elsbetiae_contig1386.2908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:25356..26576+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTATGTTGACTCGGGATCGCCACCACCGGTAGCGTTCGGCATGCCGGA
GCCCGCCCCGTATGATCTCGGCGGCGGCGGCGGCGACGAGCAGTTCGGCG
GCGGCGGCGGAGACCAATTCGGTGGTGGCGGCGGCGGAGACCAATTCGGC
GGCGGCGGAGAGCCATTCGGCGGCGGCGGGGAGCAGTTTGGCGGCGGGGG
GGGCGGCAGCGGCGAGCCGGGTATGTTGACTCGGGATCGCCACCACCGGT
AGCGTTCGGCATGCCGGAGCCCGCCCCGTATGATCTCGGCGGCGGCGGCG
GCGACGAGCAGTTCGGCGGCGGCGGCGGAGACCAATTCGGTGGTGGCGGC
GGCGGAGACCAATTCGGCGGCGGCGGAGAGCCATTCGGCGGCGGCGGGGA
GCAGTTTGGCGGCGGGGGGGGCGGCAGCGGCGAGCCCGGAATGCCGCTGC
AGCGGAATGCCGCTGCAGGCTTCGTCGACGCCTTACCAATCCAAACCCAC
CGACCCGTACAGCCTCGAGGAAACAGCGGGGACGATGGAGACGGCGCAGA
GCCAGTTTGACGCGGCGGTAAAGGAGAGGGCCGACCAGGAGGTGGCCAAG
GCGGCGGAGGTGAAAAAGCTGGCGGAGGAGGAGCTCGATGGCTTCTACGA
CGGGCGAACCGACGAGGTGCTGCAGCGGAGCCCCCGTGCTTCGTCGACGC
CTTACCAATCCAAACCCACCGACCCGTACAGCCTCGAGGAAACAGCGGGG
ACGATGGAGACGGCGCAGAGCCAGTTTGACGCGGCGGTAAAGGAGAGGGC
CGACCAGGAGGTGGCCAAGGCGGCGGAGGTGAAAAAGCTGGCGGAGGAGG
AGCTCGATGGCTTCTACGACGGGCGAACCGACGAGGTGCTGCAGCGGAGC
CCCCGT
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