mRNA_L-elsbetiae_contig1386.2906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1386.2906.1
Unique NamemRNA_L-elsbetiae_contig1386.2906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1386.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1386contigL-elsbetiae_contig1386:3434..4052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1386.2906.1prot_L-elsbetiae_contig1386.2906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1386 3434..4025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.1037836-CDS-L-elsbetiae_contig1386:3433..34821622815544.1037836-CDS-L-elsbetiae_contig1386:3433..3482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 3434..3482 +
1691682950.4682765-CDS-L-elsbetiae_contig1386:3433..34821691682950.4682765-CDS-L-elsbetiae_contig1386:3433..3482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 3434..3482 +
1622815544.118603-CDS-L-elsbetiae_contig1386:3801..40251622815544.118603-CDS-L-elsbetiae_contig1386:3801..4025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 3802..4025 +
1691682950.478963-CDS-L-elsbetiae_contig1386:3801..40251691682950.478963-CDS-L-elsbetiae_contig1386:3801..4025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 3802..4025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.135059-UTR-L-elsbetiae_contig1386:4025..40521622815544.135059-UTR-L-elsbetiae_contig1386:4025..4052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1386 4026..4052 +
1691682950.4887242-UTR-L-elsbetiae_contig1386:4025..40521691682950.4887242-UTR-L-elsbetiae_contig1386:4025..4052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1386 4026..4052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1386.2906.1

>prot_L-elsbetiae_contig1386.2906.1 ID=prot_L-elsbetiae_contig1386.2906.1|Name=mRNA_L-elsbetiae_contig1386.2906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
LRCIPQRRGTACDQARGLRLFFAVEHTGHIAGCCTPALLPDRGVYRGVRR
SVPTVSPERRSECQRSRVHPFSVVILLIGASEQASGLRVP*
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mRNA from alignment at L-elsbetiae_contig1386:3434..4052+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1386.2906.1 ID=mRNA_L-elsbetiae_contig1386.2906.1|Name=mRNA_L-elsbetiae_contig1386.2906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:3434..4052+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCGTTGCATCCCTCAACGCCGTGGGACGGCTTGCGATCAGGCTAGAGG
TGCGTGTAGCGCCTAGCTCTGTTCGAACACGAATCATAGTGTCCAGGGCT
TCAGTTGATACGCACGCACGTCTTTAAATGAATACGGTGGGGTCGGTTGG
TTGCTTTCGACCGACATATATCACACCCATAGATAGCCTCTTCGTGGCTC
TTCCCTTCGACATAGAAGATGAAACGCGTTTGTTGCTCTACGGGCTCCCG
GCTTCAGTGTTTCCGCAAGAGATCTATACACAATGTACCACTGCTGCTTT
GCGGGCGCGCTGACCCTGTCTGCATACGACATCTCTCCCCCGAATATCGT
TTTTGCCGCCATCGACAGGATTGCGTCTATTTTTCGCCGTCGAGCATACT
GGCCATATCGCAGGTTGCTGCACGCCCGCCTTGCTACCAGACCGGGGGGT
GTATCGCGGGGTTCGGCGGAGCGTTCCAACCGTATCACCAGAGCGACGTT
CTGAATGCCAACGCTCCCGAGTACATCCGTTCTCCGTGGTGATCCTATTG
ATTGGTGCATCCGAGCAAGCATCCGGCCTGCGGGTACCTTGACGTCCCTC
GAAGCTCGACACCGCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1386:3434..4052+

>mRNA_L-elsbetiae_contig1386.2906.1 ID=mRNA_L-elsbetiae_contig1386.2906.1|Name=mRNA_L-elsbetiae_contig1386.2906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:3434..4052+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCGTTGCATCCCTCAACGCCGTGGGACGGCTTGCGATCAGGCTAGAGC
TTCGTTGCATCCCTCAACGCCGTGGGACGGCTTGCGATCAGGCTAGAGGA
TTGCGTCTATTTTTCGCCGTCGAGCATACTGGCCATATCGCAGGTTGCTG
CACGCCCGCCTTGCTACCAGACCGGGGGGTGTATCGCGGGGTTCGGCGGA
GCGTTCCAACCGTATCACCAGAGCGACGTTCTGAATGCCAACGCTCCCGA
GTACATCCGTTCTCCGTGGTGATCCTATTGATTGGTGCATCCGAGCAAGC
ATCCGGCCTGCGGGTACCTTGAGATTGCGTCTATTTTTCGCCGTCGAGCA
TACTGGCCATATCGCAGGTTGCTGCACGCCCGCCTTGCTACCAGACCGGG
GGGTGTATCGCGGGGTTCGGCGGAGCGTTCCAACCGTATCACCAGAGCGA
CGTTCTGAATGCCAACGCTCCCGAGTACATCCGTTCTCCGTGGTGATCCT
ATTGATTGGTGCATCCGAGCAAGCATCCGGCCTGCGGGTACCTTGA
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