mRNA_L-elsbetiae_contig1386.2905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1386.2905.1
Unique NamemRNA_L-elsbetiae_contig1386.2905.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1386.2905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1386contigL-elsbetiae_contig1386:557..1694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1386.2905.1prot_L-elsbetiae_contig1386.2905.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1386 616..1694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.0375357-UTR-L-elsbetiae_contig1386:556..6151622815544.0375357-UTR-L-elsbetiae_contig1386:556..615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1386 557..615 +
1691682950.4384642-UTR-L-elsbetiae_contig1386:556..6151691682950.4384642-UTR-L-elsbetiae_contig1386:556..615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1386 557..615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.0499845-CDS-L-elsbetiae_contig1386:615..6261622815544.0499845-CDS-L-elsbetiae_contig1386:615..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 616..626 +
1691682950.448873-CDS-L-elsbetiae_contig1386:615..6261691682950.448873-CDS-L-elsbetiae_contig1386:615..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 616..626 +
1622815544.0624156-CDS-L-elsbetiae_contig1386:1486..16941622815544.0624156-CDS-L-elsbetiae_contig1386:1486..1694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 1487..1694 +
1691682950.458495-CDS-L-elsbetiae_contig1386:1486..16941691682950.458495-CDS-L-elsbetiae_contig1386:1486..1694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1386 1487..1694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1386.2905.1

>prot_L-elsbetiae_contig1386.2905.1 ID=prot_L-elsbetiae_contig1386.2905.1|Name=mRNA_L-elsbetiae_contig1386.2905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MQARGPASNGTLLAMTPSADIEWVSGATGPLSRSEMRRARKSRNRKQEKV
RRQERRQQQHHQQQQHAVKEVAP
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mRNA from alignment at L-elsbetiae_contig1386:557..1694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1386.2905.1 ID=mRNA_L-elsbetiae_contig1386.2905.1|Name=mRNA_L-elsbetiae_contig1386.2905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1138bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:557..1694+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTATAAAACGCAGAGGATAGAGACCTTTTGTATTCAGCACTCAAGAC
CTGGAAACGATGCAAGCTCGGTGAGGGAGACACGGCTCGGGTTATTTGCG
AAAATTGGTGCCACTCTAGACTAGATATACCCTACTACCGTGCTTCACTC
TGCCAGGAGGCGAATCAAGCGTAATCTCGGGCGCAAGAAGACTGCCACCC
CCTCTCTCCGCCCTGGATGTGAACGATTGTGTAGGTCTAGTCTTCTAGAT
AACAGCAGTATCTTGTAGATGCTGCTGCCTGTGGGTAGCAAGGTCTAGAT
GACTAGAAAAATGCGTACGATAGAGACTCGGCTTATTCACATCTGCTGTC
CCTAGAAAGTGTCCACGCATAATGCTACAGAACTGACTTCTTGGTGCTTG
CCGCGAAAGCCAAGCACGCACATAGACTATATCTATACATCCCCGTTAGA
TATGTCTGGCTTACAGAGAGATCTACACATGTTGACTAGACTAGCTATAC
GTTGTCGGGGCAACGGTTTAGTCTACGCAACACCTCTGTTCGAAACTTCA
AGCCCGCACGATCTGAAGTTGGTGTAGTCGATCGGCCGTCGGCTTATCTG
TTGCGGTACGGTGTGCACCCCCCAAACTGGCGCACGATGGGTGACACATT
GCTCTCCTCATGCGTGTGGTGGCACCCGCTCCTATCTAGGTCTACGCAGA
CGGTACATATAGATAAACTGTTCGACCACTTGATCGTGTTCTGTTCAAGA
AGTAATCAATGTGCCGACAATAGCATCGGCACACACTTACACACTGAAAA
CAACTAGACTAAACATCACTACCAGCAAGCAAAAGCCAAATGTAACCGCC
GGTACGGCTATTGTACAATCAATGACTCAAACTCCGAGCGTGCTCTGTCA
CCCAACGCCCTGCGGTTTGTACATTAACAGGGGCCCAGCTTCCAACGGTA
CTTTGCTAGCCATGACCCCCAGCGCTGACATCGAATGGGTGTCCGGAGCG
ACCGGTCCTCTCTCACGTTCTGAGATGAGACGCGCCCGAAAATCGCGCAA
TAGAAAACAAGAAAAGGTCCGCAGGCAAGAGCGACGACAGCAGCAGCACC
ACCAGCAACAACAACACGCCGTAAAGGAAGTAGCACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1386:557..1694+

>mRNA_L-elsbetiae_contig1386.2905.1 ID=mRNA_L-elsbetiae_contig1386.2905.1|Name=mRNA_L-elsbetiae_contig1386.2905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1386:557..1694+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGCTCGATGCAAGCTCGGGGCCCAGCTTCCAACGGTACTTTGCTA
GCCATGACCCCCAGCGCTGACATCGAATGGGTGTCCGGAGCGACCGGTCC
TCTCTCACGTTCTGAGATGAGACGCGCCCGAAAATCGCGCAATAGAAAAC
AAGAAAAGGTCCGCAGGCAAGAGCGACGACAGCAGCAGCACCACCAGCAA
CAACAACACGCCGTAAAGGAAGTAGCACCCGGGCCCAGCTTCCAACGGTA
CTTTGCTAGCCATGACCCCCAGCGCTGACATCGAATGGGTGTCCGGAGCG
ACCGGTCCTCTCTCACGTTCTGAGATGAGACGCGCCCGAAAATCGCGCAA
TAGAAAACAAGAAAAGGTCCGCAGGCAAGAGCGACGACAGCAGCAGCACC
ACCAGCAACAACAACACGCCGTAAAGGAAGTAGCACCC
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