mRNA_L-elsbetiae_contig13847.2901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13847.2901.1
Unique NamemRNA_L-elsbetiae_contig13847.2901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13847.2901.1 vs. uniprot
Match: A0A6H5K5T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.820e-16
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2 
Query:  425 ESEGMREVDAALRRMFPEEARKPAVLFYDLACRYRDYLRKIKILFWLGTLLVVDRLHFKAHRQLRCAEFCSPNHTANSMLWHAGEDGSPVFNHNSSMAESTNAWIPGFQLIVMRTEAALGQW 790
            E+EG  EVDA L+++ P+E R+P + FYD A  +  YL +   L W+ T+L+V    +   + L C+ F SPN   N +LW+  ++  P F  NSSM ES N W+ G        E    +W
Sbjct:    7 EAEGCAEVDAVLKKIVPDEDRRPTIFFYDTAYLFDRYLSRRGDLSWVATMLIVQ---YWGRKGLLCSLFNSPNDDDNPLLWNV-QEAPPEFYWNSSMGESNNGWLSGSPRETEEEEGHTARW 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13847.2901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5T4_9PHAE5.820e-1636.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13847contigL-elsbetiae_contig13847:880..3688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog5346.XP_001837902.2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.cytochrome p450
EggNOG OGsCOG2124@1,KOG0156@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1623
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13847.2901.1prot_L-elsbetiae_contig13847.2901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13847 1689..3363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.4445484-UTR-L-elsbetiae_contig13847:879..16881622815543.4445484-UTR-L-elsbetiae_contig13847:879..1688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13847 880..1688 -
1691682950.1009161-UTR-L-elsbetiae_contig13847:879..16881691682950.1009161-UTR-L-elsbetiae_contig13847:879..1688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13847 880..1688 -
1622815543.4981644-UTR-L-elsbetiae_contig13847:3363..36881622815543.4981644-UTR-L-elsbetiae_contig13847:3363..3688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13847 3364..3688 -
1691682950.1409922-UTR-L-elsbetiae_contig13847:3363..36881691682950.1409922-UTR-L-elsbetiae_contig13847:3363..3688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13847 3364..3688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.4590065-CDS-L-elsbetiae_contig13847:1688..17591622815543.4590065-CDS-L-elsbetiae_contig13847:1688..1759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 1689..1759 -
1691682950.1099129-CDS-L-elsbetiae_contig13847:1688..17591691682950.1099129-CDS-L-elsbetiae_contig13847:1688..1759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 1689..1759 -
1622815543.470718-CDS-L-elsbetiae_contig13847:2233..23881622815543.470718-CDS-L-elsbetiae_contig13847:2233..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 2234..2388 -
1691682950.117927-CDS-L-elsbetiae_contig13847:2233..23881691682950.117927-CDS-L-elsbetiae_contig13847:2233..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 2234..2388 -
1622815543.4845378-CDS-L-elsbetiae_contig13847:3100..33631622815543.4845378-CDS-L-elsbetiae_contig13847:3100..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 3101..3363 -
1691682950.1295745-CDS-L-elsbetiae_contig13847:3100..33631691682950.1295745-CDS-L-elsbetiae_contig13847:3100..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13847 3101..3363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13847.2901.1

>prot_L-elsbetiae_contig13847.2901.1 ID=prot_L-elsbetiae_contig13847.2901.1|Name=mRNA_L-elsbetiae_contig13847.2901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MKYLRAIFGRRTSFGNLTASWSCDIICGAGPLHESEGMREVDAALRRMFP
EEARKPAVLFYDLACRYRDYLRKIKILFWLGTLLVVDRLHFKAHRQLRCA
EFCSPNHTANSMLWHAGEDGSPVFNHNSSMAESTNAWIPGFQLIVMRTEA
ALGQWIPSTTRY*
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mRNA from alignment at L-elsbetiae_contig13847:880..3688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13847.2901.1 ID=mRNA_L-elsbetiae_contig13847.2901.1|Name=mRNA_L-elsbetiae_contig13847.2901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2809bp|location=Sequence derived from alignment at L-elsbetiae_contig13847:880..3688- (Laminarionema elsbetiae ELsaHSoW15)
GGGAGAACAACAGGGAGCTATCGGATTGGGCTAGCGCATTACGTGGGGCA
GACGGGCAGAAAATACACACCCTCGTTACCATGAGTAGCCGAGATCAGAC
TTGTTATTTATGAAAGGGTTGTATACTACCTTTCTGTGTGTCACTGCCTG
TTCTTGCGGAACGTTTATGACGGTGCCGTGATCTCGTCCATGTTGCCTGT
GCCTTGAAGGATGATTCTGAAACCCGACAGATCAACATCGTCCGATGTCC
GATTGGGTCCCTGTGGGGTTGATTTAATTGCGTTCACTATTGACGACGTC
TCCTTGCAAACAACAGCCCGAGGACATGAAGTATTTGCGAGCAATATTCG
GGAGACGTACAAGTTTCGGGAATCTGACTGCGAGCTGGTCGTGCGACATT
ATCTGTGGAGCGGGGCCGCTGCATGAATCCGAGGGAATGAGGGAGGTGGA
CGCCGCGCTGAGGAGGATGTTTCCCGAGGAGGCGAGGAAGCCTGCCGTGT
TGTTCTATGACCTTGCCTGCCGGTACCGAGACTACCTCCGCAAGATAAAA
ATCCTATTTTGGCTGGGGACTCTTCTGGTTGTCGACAGGTGAACCCCACA
TGCCCGCAAAATCCTAGTCCAACTAATACGCGTTTCACTCCGATTATAGC
CGGATACTGTAAGTGAGGTCAACCCCTTTTGATCCAGGAGGTTTTCACCA
CGTACCACTTAATTCTGTCCTGGAAGAAAGACGGTAAACAGACACCCTAA
CGACATACACCGGAGGGTAGAGAGCATCACGGTCGCCAAATAAAGGGCCC
GTCCCGCCTACAGTAGATACGATAACTAGATGGAGATGAATGCCCTCTTG
CTTGTGTCACAATCAGGTGGTTCATTTCCGGGGGTTCCAAAAGACAAAAA
ACATACCCCAACAATACTCTAGGTGCGGTCCCACTTTGGGGACAATCGCG
GTGTGTGTAGATTGGCGCCACAACTCCATCTGGTCCTATTTTTTCCGAGG
CTGGTTACTTGTTCTTCTGTGGGCCGTCTTCATACAATATTTTAGTCCAC
ATGCTGTTATGCGGGCAGTCCGCGTTAATTTTACATTTTGCTGACGCCAG
GAGTGATCGCCACGGCCGGCGTCGTGCCCAACACACAACATTATTTGTCC
CACAGCGGTCTGTTGCGCACGCTCCCGTCCCAATCACATTTTAGACCTTC
CTTTTGTGATTCACAGCACTGATCTTGTTTTCGAAAATCGCCTATCAACG
ATCAGTTCGCTGACCGCCCTACCGCTTTCTACTCCCCGCTGAGGTCGCAG
GCTCCATTTCAAGGCTCATCGTCAACTGAGGTGCGCCGAATTTTGCAGCC
CGAATCACACTGCTAATTCGATGCTCTGGCACGCGGGCGAGGATGGGAGT
CCCGTCTTTAACCACAACAGCAGCATGGCCGAATCGACCAATGCGTGGAT
ACCGGGTAAGCTTGTGTGCATGTGCCCGCGTATAGCTCTGTTGGTGGATA
GGTTTGTGTGGTGGGAATATGTATTTCGTTTCAGTAATAGTTAAGAGATT
GTTTTAGGTACCCCCACGCTTCGTCGATATCTCTGATACTATCTTCAATA
GCTTCGCCTGAATTGCATTTCCGTCAACTTTCTCATGATCCACCCACCAA
CCTCAAAACACAGCACCCACTTCTCGGCGGCCTACTCCCAAACGTAAATA
GTGCGTATAGTAGGTCCATCCTCTGTCATGCTCCCCTATGTTTGTGCAGT
GGGCTATAGGCGCATATCCTGCCCTAAACATCAACCTGAAAAAAAGACAG
GAAAAGGGTTGTCTATTCCCCGGTACTCATCGGCCTTGCTCTATATGTAT
GTCTTATTTGTTCTTCTCGCAGCAGGACGCAGTGTTTTTTTTCTGGCAAG
TTACTAACTTCTACCCGTTGTCACTTCAGGTTTCCAGCTCATCGTTATGA
GGACGGAAGCCGCGCTTGGCCAGTGGATCCCTTCAACAACACGATATTGA
AGAACGTGATCTTGTTGTAATCTACGCTGATGACAAAAAATCCTACCTTC
GACGCCTGATCGGGGGGTTTATGTAGGTTTGGGTGACCAACGTTTATAAC
CTATGGTGTACGTGGGGCTGAAGCTACGAGCGCCCTATGGCATACTCTGT
TGGTAAGAATGTTTCGATATTCAACGCCTGATCGGGAGTGTATGTAGATT
TGGGCGACCAAGTTTTATAGCCTAGGGTGTAACTGGGGCTGAAGCTACGA
GTGACCTATAGCATACTCAATTGTTTAGAGTTTTTTGAGAGCATTACTTC
GCATAACCTGGATGTGCTTTTAGATCACGTGCTTTTCTACAAACGCCGTT
TAACGCCGAACGGGGCCCCCCACCTTCGTCAGCGCCTTGTGCGTCGCCGC
CCGGATGGCATGATCTCGACAACATAACCAATGAGGGCTTTCAGGGGTTT
GAGCCCACTCCGAACTGAATCGGGTCACAATATCCGCAACTATTTTGTGG
AAAATGACGTGATATGTAAAGTGCGTATGCACGTGGCGCGAGGATAACTA
GAGGATAATTCGAGGCACAGTTCATGCACGTTTGATTATCGCGCCTTTTC
AAGTCGCTTTCGTTCCCGAACGGGATGGTCGCCTCCGGTGGAACCGCAGC
AGCTACGGCCAGAAGGTCAACTGCTGGGGCTTTCTTGTGGGAAACGGAGG
ATTATCGCTTATCGACCTTGTTGCTGTTGTTGTTGCCTTCGCGTTCAAAT
TCACTTCGGTGTCGCTACGAAAATGTCTGCGCTGAACCAACGTTTTACGC
GTACGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13847:880..3688-

>mRNA_L-elsbetiae_contig13847.2901.1 ID=mRNA_L-elsbetiae_contig13847.2901.1|Name=mRNA_L-elsbetiae_contig13847.2901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig13847:880..3688- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTATTTGCGAGCAATATTCGGGAGACGTACAAGTTTCGGGAATCT
GACTGCGAGCTGGTCGTGCGACATTATCTGTGGAGCGGGGCCGCTGCATG
AATCCGAGGGAATGAGGGAGGTGGACGCCGCGCTGAGGAGGATGTTTCCC
GAGGAGGCGAGGAAGCCTGCCGTGTTGTTCTATGACCTTGCCTGCCGGTA
CCGAGACTACCTCCGCAAGATAAAAATCCTATTTTGGCTGGGGACTCTTC
TGGTTGTCGACAGATGAAGTATTTGCGAGCAATATTCGGGAGACGTACAA
GTTTCGGGAATCTGACTGCGAGCTGGTCGTGCGACATTATCTGTGGAGCG
GGGCCGCTGCATGAATCCGAGGGAATGAGGGAGGTGGACGCCGCGCTGAG
GAGGATGTTTCCCGAGGAGGCGAGGAAGCCTGCCGTGTTGTTCTATGACC
TTGCCTGCCGGTACCGAGACTACCTCCGCAAGATAAAAATCCTATTTTGG
CTGGGGACTCTTCTGGTTGTCGACAGGCTCCATTTCAAGGCTCATCGTCA
ACTGAGGTGCGCCGAATTTTGCAGCCCGAATCACACTGCTAATTCGATGC
TCTGGCACGCGGGCGAGGATGGGAGTCCCGTCTTTAACCACAACAGCAGC
ATGGCCGAATCGACCAATGCGTGGATACCGGGCTCCATTTCAAGGCTCAT
CGTCAACTGAGGTGCGCCGAATTTTGCAGCCCGAATCACACTGCTAATTC
GATGCTCTGGCACGCGGGCGAGGATGGGAGTCCCGTCTTTAACCACAACA
GCAGCATGGCCGAATCGACCAATGCGTGGATACCGGGTTTCCAGCTCATC
GTTATGAGGACGGAAGCCGCGCTTGGCCAGTGGATCCCTTCAACAACACG
ATATTGAGTTTCCAGCTCATCGTTATGAGGACGGAAGCCGCGCTTGGCCA
GTGGATCCCTTCAACAACACGATATTGA
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