mRNA_L-elsbetiae_contig13840.2899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13840.2899.1
Unique NamemRNA_L-elsbetiae_contig13840.2899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13840.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13840contigL-elsbetiae_contig13840:468..1421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size783
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13840.2899.1prot_L-elsbetiae_contig13840.2899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13840 604..1086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.1675649-UTR-L-elsbetiae_contig13840:467..6031622815543.1675649-UTR-L-elsbetiae_contig13840:467..603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 468..603 +
1691682950.0396125-UTR-L-elsbetiae_contig13840:467..6031691682950.0396125-UTR-L-elsbetiae_contig13840:467..603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 468..603 +
1622815543.1997428-UTR-L-elsbetiae_contig13840:1086..11501622815543.1997428-UTR-L-elsbetiae_contig13840:1086..1150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 1087..1150 +
1691682950.0600038-UTR-L-elsbetiae_contig13840:1086..11501691682950.0600038-UTR-L-elsbetiae_contig13840:1086..1150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 1087..1150 +
1622815543.2190542-UTR-L-elsbetiae_contig13840:1321..14211622815543.2190542-UTR-L-elsbetiae_contig13840:1321..1421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 1322..1421 +
1691682950.0677464-UTR-L-elsbetiae_contig13840:1321..14211691682950.0677464-UTR-L-elsbetiae_contig13840:1321..1421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13840 1322..1421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.1882625-CDS-L-elsbetiae_contig13840:603..10861622815543.1882625-CDS-L-elsbetiae_contig13840:603..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13840 604..1086 +
1691682950.049844-CDS-L-elsbetiae_contig13840:603..10861691682950.049844-CDS-L-elsbetiae_contig13840:603..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13840 604..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13840.2899.1

>prot_L-elsbetiae_contig13840.2899.1 ID=prot_L-elsbetiae_contig13840.2899.1|Name=mRNA_L-elsbetiae_contig13840.2899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MGGRWAAMLLPLPPRGAEGSGTLCKGEPFVSAPVLELGQHVGTDRGHPSL
VFVGSGGVGMQSFYLFRLLKTKCTQDTMWLWPVVRLEAINVLAPEGIILL
PNFVVWSLITNCFETKYHYFIISHQHLGVFSLLLTLLFLGQVTYIRGMTS
YLPVGGLHKM*
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mRNA from alignment at L-elsbetiae_contig13840:468..1421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13840.2899.1 ID=mRNA_L-elsbetiae_contig13840.2899.1|Name=mRNA_L-elsbetiae_contig13840.2899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig13840:468..1421+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCAGCGGCTTCGGTGCCGGGGCAAGAGTCGCCCCTGCTACCGCGAG
AAGTGGTCTGCTCGGGGGTGGTGGACGCAGCGGCGGCAGCAGGCAGGGTT
ATGCCGCAGTAGGCGAGGCCGAAGGTACCGACTCGGATGGGCGGGAGGTG
GGCGGCGATGCTGCTTCCACTTCCGCCTCGGGGAGCGGAGGGGAGTGGGA
CCCTGTGTAAGGGAGAGCCGTTTGTGTCAGCACCAGTGTTAGAACTCGGA
CAACACGTTGGGACCGACCGCGGACATCCTTCGCTTGTTTTTGTCGGCTC
TGGTGGTGTCGGCATGCAATCATTCTATCTTTTCAGGCTGTTGAAAACCA
AGTGTACACAAGATACGATGTGGTTGTGGCCTGTCGTCAGACTTGAAGCT
ATAAACGTGCTAGCTCCGGAGGGAATCATTTTGCTCCCGAATTTTGTTGT
TTGGTCGCTGATCACGAACTGCTTCGAGACGAAGTACCATTATTTCATTA
TTTCCCATCAGCATCTGGGAGTTTTTTCGCTTTTGCTTACGTTGTTGTTC
TTGGGGCAGGTTACGTATATACGAGGGATGACAAGCTACTTGCCCGTGGG
GGGTTTACACAAAATGTAGAGGTCGTCAGTAACACCATCATACATATCAA
GCAGATGCCCGCAGCGCCGAGTTGTCACCGGAAGCAGCTGTGTGCTATCA
CCCCCCCCCCCCCCCCCCCGGATGGCGGGGCGTTCTGTGTTGGGGGGGGG
GGGGGGTTTTGGGGGGTGGCGTGGGGGGGGGGTGGGAGAGAGGGANNNNN
NNNNNCATCATACATTACCAGACGGTGCCCGCAGCCGCCCGTTTTCCCCG
GAAGCAGCTGTGTGCTATCCCCCCCCCCCCCCCGCGATGTGTAGCGCACT
GTTCGTTGACGGAGGTCGTGGAGCTTTTGGGGGATCCGCATGGGGACTGA
ATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13840:468..1421+

>mRNA_L-elsbetiae_contig13840.2899.1 ID=mRNA_L-elsbetiae_contig13840.2899.1|Name=mRNA_L-elsbetiae_contig13840.2899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig13840:468..1421+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGGGAGGTGGGCGGCGATGCTGCTTCCACTTCCGCCTCGGGGAGC
GGAGGGGAGTGGGACCCTGTGTAAGGGAGAGCCGTTTGTGTCAGCACCAG
TGTTAGAACTCGGACAACACGTTGGGACCGACCGCGGACATCCTTCGCTT
GTTTTTGTCGGCTCTGGTGGTGTCGGCATGCAATCATTCTATCTTTTCAG
GCTGTTGAAAACCAAGTGTACACAAGATACGATGTGGTTGTGGCCTGTCG
TCAGACTTGAAGCTATAAACGTGCTAGCTCCGGAGGGAATCATTTTGCTC
CCGAATTTTGTTGTTTGGTCGCTGATCACGAACTGCTTCGAGACGAAGTA
CCATTATTTCATTATTTCCCATCAGCATCTGGGAGTTTTTTCGCTTTTGC
TTACGTTGTTGTTCTTGGGGCAGGTTACGTATATACGAGGGATGACAAGC
TACTTGCCCGTGGGGGGTTTACACAAAATGTAGATGGGCGGGAGGTGGGC
GGCGATGCTGCTTCCACTTCCGCCTCGGGGAGCGGAGGGGAGTGGGACCC
TGTGTAAGGGAGAGCCGTTTGTGTCAGCACCAGTGTTAGAACTCGGACAA
CACGTTGGGACCGACCGCGGACATCCTTCGCTTGTTTTTGTCGGCTCTGG
TGGTGTCGGCATGCAATCATTCTATCTTTTCAGGCTGTTGAAAACCAAGT
GTACACAAGATACGATGTGGTTGTGGCCTGTCGTCAGACTTGAAGCTATA
AACGTGCTAGCTCCGGAGGGAATCATTTTGCTCCCGAATTTTGTTGTTTG
GTCGCTGATCACGAACTGCTTCGAGACGAAGTACCATTATTTCATTATTT
CCCATCAGCATCTGGGAGTTTTTTCGCTTTTGCTTACGTTGTTGTTCTTG
GGGCAGGTTACGTATATACGAGGGATGACAAGCTACTTGCCCGTGGGGGG
TTTACACAAAATGTAG
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