mRNA_L-elsbetiae_contig13839.2897.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13839.2897.1
Unique NamemRNA_L-elsbetiae_contig13839.2897.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: D7FVD5_ECTSI (Small ubiquitin-like modifier n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVD5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 9.170e-31
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    4 TGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            TGEETYFKVKKTTRMEKVF TYA+RKGV V+ALRFLLDG RV A+DTPTSLELEDQDQIDCMLEQQGG
Sbjct:   14 TGEETYFKVKKTTRMEKVFTTYASRKGVSVSALRFLLDGSRVGAEDTPTSLELEDQDQIDCMLEQQGG 81
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.040e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FKVKKTTRMEKVF TYA+RKGVQV ALRFLLDG+RVN   TP  L+LEDQDQIDCMLEQQGG
Sbjct:   32 QTGEETFFKVKKTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDLEDQDQIDCMLEQQGG 100
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.170e-26
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FKVKKTTRMEKVF+TYA RKGVQ +ALRFLLDG RV+ + TP  L+LEDQD IDCMLEQQGG
Sbjct:   28 QTGEETFFKVKKTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDLEDQDMIDCMLEQQGG 96
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A6U5EFS5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EFS5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.430e-26
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FK+KKTT+M KVFNTYA RKGVQV +LRFLLDG R+  +DTP  LEL+DQDQIDCMLEQ GG
Sbjct:   24 QTGEETFFKIKKTTKMSKVFNTYAQRKGVQVNSLRFLLDGDRIQNEDTPAKLELDDQDQIDCMLEQMGG 92
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 111 bits (277), Expect = 3.590e-26
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGGGLH 216
            QTGEET+FK+KKTT+M+KVF TYATRKGVQV +LRFLLDG R+  D TP  LELEDQDQIDC+LEQ GG  H
Sbjct:   24 QTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGGKGH 95
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A448ZJ15_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ15_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.310e-25
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FK+KKTT+M KVF TYA RKGVQ+++LRFLLDG+R+  D TP  LEL+DQDQIDCMLEQ GG
Sbjct:   22 QTGEETFFKIKKTTKMSKVFGTYANRKGVQLSSLRFLLDGERIEPDQTPKMLELDDQDQIDCMLEQSGG 90
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A1Z5JHQ4_FISSO (Small ubiquitin-related modifier n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHQ4_FISSO)

HSP 1 Score: 108 bits (271), Expect = 1.720e-25
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            Q GEET+FK+KKTT+M+KVF TYATRKG+Q+A+LRFLLDG+RV    TP  LELEDQDQIDCMLEQ GG
Sbjct:   19 QQGEETFFKIKKTTKMQKVFETYATRKGLQIASLRFLLDGERVEPTSTPKMLELEDQDQIDCMLEQAGG 87
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A7S2G492_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G492_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.710e-25
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FKVKK+TR EKVF+TYA RKGV VA+LRFL+DG+R+N   +P  L++EDQDQIDCMLEQQGG
Sbjct:   47 QTGEETFFKVKKSTRFEKVFSTYAQRKGVNVASLRFLIDGERINPSQSPAELDMEDQDQIDCMLEQQGG 115
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A7S2W0L4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0L4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.240e-25
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            Q+GEET+FKVKKTTRMEKVFNTYA+RKGV+   LRFLLDG R+N + TP  L+LEDQDQIDC+LEQ GG
Sbjct:   46 QSGEETFFKVKKTTRMEKVFNTYASRKGVRTDTLRFLLDGDRINGEMTPEQLDLEDQDQIDCLLEQVGG 114
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BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Match: A0A7S2XQM2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQM2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.070e-24
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 QTGEETYFKVKKTTRMEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLEQQGG 207
            QTGEET+FK+KKTT+M KVF TYA RKGVQ A+LRFLLDG+R+  D TP  LEL+DQDQIDCMLEQ GG
Sbjct:   49 QTGEETFFKIKKTTKMAKVFETYAQRKGVQSASLRFLLDGERIQPDATPRQLELDDQDQIDCMLEQTGG 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13839.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVD5_ECTSI9.170e-3189.71Small ubiquitin-like modifier n=2 Tax=Ectocarpus T... [more]
A0A7S2UU84_9STRA1.040e-2784.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YTL0_9STRA2.170e-2679.71Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A6U5EFS5_9STRA2.430e-2676.81Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7G0R2_PHATC3.590e-2675.00Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A448ZJ15_9STRA1.310e-2573.91Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A1Z5JHQ4_FISSO1.720e-2575.36Small ubiquitin-related modifier n=1 Tax=Fistulife... [more]
A0A7S2G492_9STRA2.710e-2573.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2W0L4_9STRA7.240e-2575.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XQM2_9STRA1.070e-2475.36Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13839contigL-elsbetiae_contig13839:2848..4139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FVD5
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001221,GO:0001222,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016604,GO:0016605,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031386,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.Small ubiquitinrelated modifier
EggNOG OGsCOG5227@1,KOG1769@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Exons1
Model size1292
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13839.2897.1prot_L-elsbetiae_contig13839.2897.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13839 2893..3069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.9527204-UTR-L-elsbetiae_contig13839:2847..28921622815542.9527204-UTR-L-elsbetiae_contig13839:2847..2892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13839 2848..2892 +
1691682949.9060817-UTR-L-elsbetiae_contig13839:2847..28921691682949.9060817-UTR-L-elsbetiae_contig13839:2847..2892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13839 2848..2892 +
1622815542.9752016-UTR-L-elsbetiae_contig13839:3069..41391622815542.9752016-UTR-L-elsbetiae_contig13839:3069..4139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13839 3070..4139 +
1691682949.9294116-UTR-L-elsbetiae_contig13839:3069..41391691682949.9294116-UTR-L-elsbetiae_contig13839:3069..4139Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13839 3070..4139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.964297-CDS-L-elsbetiae_contig13839:2892..30691622815542.964297-CDS-L-elsbetiae_contig13839:2892..3069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13839 2893..3069 +
1691682949.921406-CDS-L-elsbetiae_contig13839:2892..30691691682949.921406-CDS-L-elsbetiae_contig13839:2892..3069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13839 2893..3069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13839.2897.1

>prot_L-elsbetiae_contig13839.2897.1 ID=prot_L-elsbetiae_contig13839.2897.1|Name=mRNA_L-elsbetiae_contig13839.2897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MEKVFNTYATRKGVQVAALRFLLDGQRVNADDTPTSLELEDQDQIDCMLE
QQGGGLHH*
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mRNA from alignment at L-elsbetiae_contig13839:2848..4139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13839.2897.1 ID=mRNA_L-elsbetiae_contig13839.2897.1|Name=mRNA_L-elsbetiae_contig13839.2897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1292bp|location=Sequence derived from alignment at L-elsbetiae_contig13839:2848..4139+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGGAGAGGAGACATACTTCAAGGTCAAGAAGACTACTCGGATGGA
GAAGGTGTTCAACACGTATGCCACGCGTAAGGGTGTACAGGTGGCGGCTC
TACGATTTCTTCTCGATGGTCAACGTGTGAACGCGGACGACACTCCTACA
TCTCTGGAGCTGGAAGACCAAGACCAGATCGACTGCATGCTGGAGCAGCA
AGGTGGCGGACTCCACCACTGAGTCAAATTCGTGAAAGCAGGATATGGTT
TCGTCCGGTGGTTTCAGTTCGCAACGGTTTTCCTCTCGCAGATCGTGTCC
AGCCGTTTTTGTGGCATTTCCAAACTAAACTGTCGTGTTTGCTACATAGT
TGCGACGCCGGTTACATGCAGAGAAACGGTGCTGCAGAAAGGGTGTCGTG
GCGTTGGATGTTGAGGGCAGGCTGGCTTGATGCAAGACAAGTCACTTTGT
TATTCAAGGTGTACCCAGAGTGACACGGATATCTCGGAAGTAGTGTACAT
TAGACGTACCCGGTTGCCTGCTGTTGTAGGCCTGAAGGACCAAAACCCGT
GGGCGGAGCTGTGTATTGTATCTACTCAATGCAGGCGGCGTTGATTTGAC
CGTAAAGTCACCCTGTACGACATACACTCGGTTGAAGGAGGCTTATTCGC
CATGGCCATGTTAGAGGGGGGGGGTGATGGGCAAAATCCGAACTTAGAGC
TGTGTGCGGTTCGTTACCGTGTCTCCGTTGCCGACTCGAAACGAAACCCG
AGCAGATGTGCGTTCTCGGCCGTGACCTCCTCTAAACCGTGGAACTTGTT
GTCCCACCCATGTAAGTGTTTTGAAAATATATAAGCTCAAACATGAAAGG
CTGATGCCCACCTGAGACCAGTCTCGCAAGAGCAGGGTTTTTCCTTGGAT
ACAAAGGTTCCGTACTGTTTTCATTGGCCTTGCAGATTCCATGCTGCACG
CTTGCTCACCAATTTGAGTCTCTCTCTTGGGCACTGACGCGACCCTCCTG
TCAGGCGATTCGCTCATCTATCGTACAACTTCTATCTTCACACTCGTACT
GTTCGTTTCGGACAGATCAAGGTGGTAAACCTTTTCCATAGTCACGTTTT
ACTACGTTAAAAAACAGCCGGAGCTGTACATCGCCCACTTTTTCTTTTTT
TGATCAACCCTTCACCGCCTACTTACTACTCCGGAGTATTTACTTTCCGC
ACCTGAAGTTTCACACCCTTCATGCGCAACGGTGATTTTGCTTCGGATTT
GTCATCCGTTGGAGTGAGAGCTAGTCTACTGTGGTCTGTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13839:2848..4139+

>mRNA_L-elsbetiae_contig13839.2897.1 ID=mRNA_L-elsbetiae_contig13839.2897.1|Name=mRNA_L-elsbetiae_contig13839.2897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig13839:2848..4139+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAAGGTGTTCAACACGTATGCCACGCGTAAGGGTGTACAGGTGGC
GGCTCTACGATTTCTTCTCGATGGTCAACGTGTGAACGCGGACGACACTC
CTACATCTCTGGAGCTGGAAGACCAAGACCAGATCGACTGCATGCTGGAG
CAGCAAGGTGGCGGACTCCACCACTGAATGGAGAAGGTGTTCAACACGTA
TGCCACGCGTAAGGGTGTACAGGTGGCGGCTCTACGATTTCTTCTCGATG
GTCAACGTGTGAACGCGGACGACACTCCTACATCTCTGGAGCTGGAAGAC
CAAGACCAGATCGACTGCATGCTGGAGCAGCAAGGTGGCGGACTCCACCA
CTGA
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