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Homology
BLAST of mRNA_L-elsbetiae_contig1383.2896.1 vs. uniprot
Match: D7FZQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ3_ECTSI) HSP 1 Score: 431 bits (1107), Expect = 1.330e-147 Identity = 234/333 (70.27%), Postives = 262/333 (78.68%), Query Frame = 1
Query: 1 GRPLSSRRSG-GRSDLRRVPLKKRSQSLGEKMAL----AVSNPTREPPPPSK--LMLYHVSRPEPRARWVFNLSKHTNVVDNNAPPEAITSTIDKNRPNLGGLVWINAVEGNLHCCLQKGVKNKAVTPVPAEVLDGWLNGQTGFWWIGALKEGHRALWDSHVVMNWAMVFIPSSPEVAARNNMNVWRDKCLPGSLRVARPGELARKILDIVADDQDKEPDQLVHTHLCILLAEGDDLELRRPKMFQA-PTPTPSQAGLERDGAPGSRPASARGLRP-----GSAGGGGGADPALGPLSPENAAALEEAMEKVGKYRERVVILKEDRRSKKALV 960
GRPLS RS GR+ R L+KRSQS+G+KMAL A S T P P + L+LYHVSRPEPRARWVFNLSKHTNV D+ PPE ITSTIDK RPNLGGLVW+NAV G+LHCCLQKGVKNKAVTPVPA VLDGWLNGQTG WWIGALKEGHRALWDSHVVMNWAMVFIPSSPE+AA+NNM VW DKCLPGSLRVARPGEL RKILDIVADDQDKEP Q+VHTHLCILLAEGDDLEL+RP+MF + TP+P + + SR S+ L P G A G D +LG ++ N A +EEA+EKV KYRER+VILK+DRR+KKAL+
Sbjct: 27 GRPLSVGRSRTGRTAETRRALRKRSQSVGDKMALVGPGAPSPTTFSPQAPVQPNLLLYHVSRPEPRARWVFNLSKHTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPEIAAKNNMEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSVTTPSPGETPTSKKALSHSRSISSFDLGPSLEKNGLARAG---DASLGAITNRNVAGIEEALEKVAKYRERIVILKDDRRAKKALM 356
BLAST of mRNA_L-elsbetiae_contig1383.2896.1 vs. uniprot
Match: A0A6H5KYF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF6_9PHAE) HSP 1 Score: 263 bits (672), Expect = 3.500e-82 Identity = 134/176 (76.14%), Postives = 146/176 (82.95%), Query Frame = 1
Query: 1 GRPLS--SRRSGGRSDLRRVPLKKRSQSLGEKMALA---VSNPTREPPPPSK--LMLYHVSRPEPRARWVFNLSKHTNVVDNNAPPEAITSTIDKNRPNLGGLVWINAVEGNLHCCLQKGVKNKAVTPVPAEVLDGWLNGQTGFWWIGALKEGHRALWDSHVVMNWAMVFIPSSPE 507
GRPLS RSG ++LRR L+KRSQS+G+KM L +P PP P++ L+LYHVSRPEPRARWVFNLSK TNV D+ PPE ITSTIDK RPNLGGLVW+NAV G+LHCCLQKGVKNKAVTPVPA VLDGWLNGQTG WWIGALKEGHRALWDSHVVMNWAMVFIPSSPE
Sbjct: 207 GRPLSVGRSRSGRTAELRRS-LRKRSQSVGDKMVLVGPGAPSPPFNPPAPAQPNLLLYHVSRPEPRARWVFNLSKPTNVTDSGPPPETITSTIDKKRPNLGGLVWVNAVAGSLHCCLQKGVKNKAVTPVPANVLDGWLNGQTGLWWIGALKEGHRALWDSHVVMNWAMVFIPSSPE 381
BLAST of mRNA_L-elsbetiae_contig1383.2896.1 vs. uniprot
Match: A0A6H5L5X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X5_9PHAE) HSP 1 Score: 164 bits (415), Expect = 3.140e-42 Identity = 97/151 (64.24%), Postives = 111/151 (73.51%), Query Frame = 1
Query: 526 MNVWRDKCLPGSLRVARPGELARKILDIVADDQDKEPDQLVHTHLCILLAEGDDLELRRPKMFQ-APTPTPSQAGLERDGAPGSRPASARGL-----RPGSAGGGGGADPALGPLSPENAAALEEAMEKVGKYRERVVILKEDRRSKKALV 960
M VW DKCLPGSLRVARPGEL RKILDIVADDQDKEP Q+VHTHLCILLAEGDDLEL+RP+MF A TP+P + + SR S L + G A GG D +LG ++ N A +EEA+EKV KYRER+VILKEDRR+KKALV
Sbjct: 1 MEVWHDKCLPGSLRVARPGELTRKILDIVADDQDKEPSQVVHTHLCILLAEGDDLELKRPRMFSSATTPSPGEITTSKKALSHSRSISLFDLGQSLEKNGLARGG---DASLGAITNRNVAGIEEALEKVAKYRERIVILKEDRRAKKALV 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 960 |
| Cds size | 960 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815542.860336-CDS-L-elsbetiae_contig1383:23724..23902 | 1622815542.860336-CDS-L-elsbetiae_contig1383:23724..23902 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 23725..23902 + |
| 1691682949.860303-CDS-L-elsbetiae_contig1383:23724..23902 | 1691682949.860303-CDS-L-elsbetiae_contig1383:23724..23902 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 23725..23902 + |
| 1622815542.8732398-CDS-L-elsbetiae_contig1383:24061..24390 | 1622815542.8732398-CDS-L-elsbetiae_contig1383:24061..24390 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 24062..24390 + |
| 1691682949.8720284-CDS-L-elsbetiae_contig1383:24061..24390 | 1691682949.8720284-CDS-L-elsbetiae_contig1383:24061..24390 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 24062..24390 + |
| 1622815542.8842518-CDS-L-elsbetiae_contig1383:25510..25740 | 1622815542.8842518-CDS-L-elsbetiae_contig1383:25510..25740 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 25511..25740 + |
| 1691682949.8805964-CDS-L-elsbetiae_contig1383:25510..25740 | 1691682949.8805964-CDS-L-elsbetiae_contig1383:25510..25740 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 25511..25740 + |
| 1622815542.8958075-CDS-L-elsbetiae_contig1383:25875..26017 | 1622815542.8958075-CDS-L-elsbetiae_contig1383:25875..26017 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 25876..26017 + |
| 1691682949.888085-CDS-L-elsbetiae_contig1383:25875..26017 | 1691682949.888085-CDS-L-elsbetiae_contig1383:25875..26017 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 25876..26017 + |
| 1622815542.9091868-CDS-L-elsbetiae_contig1383:26439..26520 | 1622815542.9091868-CDS-L-elsbetiae_contig1383:26439..26520 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 26440..26520 + |
| 1691682949.895834-CDS-L-elsbetiae_contig1383:26439..26520 | 1691682949.895834-CDS-L-elsbetiae_contig1383:26439..26520 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1383 26440..26520 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1383.2896.1 >prot_L-elsbetiae_contig1383.2896.1 ID=prot_L-elsbetiae_contig1383.2896.1|Name=mRNA_L-elsbetiae_contig1383.2896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=320bp
GRPLSSRRSGGRSDLRRVPLKKRSQSLGEKMALAVSNPTREPPPPSKLML
YHVSRPEPRARWVFNLSKHTNVVDNNAPPEAITSTIDKNRPNLGGLVWIN
AVEGNLHCCLQKGVKNKAVTPVPAEVLDGWLNGQTGFWWIGALKEGHRAL
WDSHVVMNWAMVFIPSSPEVAARNNMNVWRDKCLPGSLRVARPGELARKI
LDIVADDQDKEPDQLVHTHLCILLAEGDDLELRRPKMFQAPTPTPSQAGL
ERDGAPGSRPASARGLRPGSAGGGGGADPALGPLSPENAAALEEAMEKVG
KYRERVVILKEDRRSKKALV back to topmRNA from alignment at L-elsbetiae_contig1383:23725..26520+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1383.2896.1 ID=mRNA_L-elsbetiae_contig1383.2896.1|Name=mRNA_L-elsbetiae_contig1383.2896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2796bp|location=Sequence derived from alignment at L-elsbetiae_contig1383:23725..26520+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGTCCGCTTAGCTCACGCCGCAGCGGCGGCCGCAGCGACCTCAGGAG
AGTCCCGCTCAAGAAGAGAAGCCAATCTCTCGGAGAGAAAATGGCTCTGG
CGGTGTCGAACCCTACGAGGGAACCCCCCCCTCCGAGCAAGCTCATGCTG
TACCACGTCTCGAGGCCGGAGCCGCGAGGTAGGTCTGTCAACAAGCTAGT
ACAGAGTTGTTCGCGGGAGAGAGAAAATCTCCGCAAAGGCCCGTGAACTA
CCCCGATGAAGCACCAACTTGATGCGTCTTCATCGTAAAAAGTATTTCCG
TTTGCCCCCGTCTTCCCACGTTTTTTTACGTACACAGCCCGGTGGGTGTT
CAACCTTTCGAAGCACACGAACGTCGTGGACAACAATGCCCCTCCCGAAG
CCATCACCTCCACCATCGACAAGAACAGGCCGAACCTGGGCGGCCTGGTG
TGGATCAACGCCGTGGAGGGGAATCTCCACTGCTGCCTACAGAAGGGCGT
GAAAAATAAGGCGGTTACTCCTGTGCCCGCCGAGGTTCTGGACGGCTGGC
TCAATGGACAGACGGGGTTCTGGTGGATTGGCGCCCTGAAGGAGGGCCAC
CGGGCGCTGTGGGACTCTCACGTAGTGATGAACTGGGCCATGGTGTTCAT
CCCCTCGTCACCCGAGGTATGTGGTGCATGCGTGCGTCGTGTGTGCGAAC
AAAAAAAGAATCTGGACTCTTTTCGCGTTTACTTGCTGCTTGTTTCCAGG
ACTAGATACACATTTGCACTGCTTGCTGGCATATATGTGCACAGAGGTAT
GTAGCAAGGGTAGTGAGTGCCCTTTTGGCACTCAGCATGGGAGCAGCGCG
ACCCCAACACTTCTAAATGTATTTGCCATAGCCACATCTCATCTACACAC
AGCTCACTCATAATAATACAAAAAACAAGTCCCCGCGCACAACACATCAA
TCAGCGAAAATGTCCCTCCACGAATTCCTGAGCGTCTCTCGAGGGTGTCT
CGTTTTTTTTTGTGACCTCGCGTCCCTGCGATACGGTCGCAGTTGCGCCT
GCAAACCCTCCAGGGAATGCGTCGCTGAGTCTTGGCGGGTTCGGTTTGAA
TACATGTAGTACCTACCGCGCACCCGGCGCAGCAGTTTGACACCAACTTA
AAGAACCCTTTTTTTGTTCTAAATTCACGTCAGCACGTCAGTCAGTAGAG
GTCGTTCCGAATCAAGCAAGCCCTGGCTGTTTGTACAAGCACTTTTCCAT
CAGTCAAGTAGCGCGACTTGTGCTGATCCTGGCTCGTAGACCATGTCAAG
GTTTTCTGAGTAGGTCTCGTATTCGTCTACATACAACAGCCAGCCGTGTT
TTTGTATTTTTTCTACTCTTTTTGTTCATGTCTGTCCCTCGGAGGTTTAT
TGCAAGAAACAGCCGCACCTTTTTTCATCAGCAAGCACACGTTCGAATTA
CGTTCGAAATATGTACACAAAGTGCACGCTCGATGAACCGAACCATGAAA
CGGGCGAAAGCTGCCGCTTGATTTTGTGTGGCAAGTAATTGAGCAAGTAA
TTGGCATCAGCCAGTAGGAGAGGCGAAAGGGTGCCAAAAAAGAACCTCCC
GGCGAGACTCCCTGCTTACAATACAAACCATCAAACTATCGCTCGGAAAG
TTAATCAATAAAATCATGTGTGGGGCTGGCTGAACCGGCGGCATTCCATC
ATTATACATACATACGTGGTAATATTTTGATAGTTTCTTTGAATTTCCTG
TTTTTTTTTCATCCAATTTAAAAAAAAAAAAAAAAGGTTGCCGCCCGGAA
CAACATGAACGTGTGGCGCGACAAGTGCCTCCCGGGCAGCCTGCGCGTGG
CCCGCCCCGGCGAGCTCGCCCGCAAGATCCTGGACATCGTGGCGGACGAC
CAGGACAAGGAACCCGACCAACTGGTGCACACCCACCTCTGCATCCTCCT
GGCGGAGGGGGACGACCTCGAGCTGCGGCGCCCCAAGATGTTCCAGGCGC
CGACCCCGACCCCTTCGTCACAGTCGTCCGCGCGCCCGCGCTCGGCGCGC
CAGCTGACCGCGGGAGGTGGGGGGGGGGGCGCGGCAGGGCCGTCGCCGTC
GTCCCAGCGGAGGCTGAAGCAGTCCAAGTCGCTGGGCCCCGCGGACATGA
GGCAGGCGGGCCTGGAGAGGGACGGGGCCCCTGGGTCTCGCCCGGCCAGC
GCACGGGGGTTGCGGCCTGGTAGCGCCGGGGGGGGCGGAGGAGCTGACCC
GGCGCTGGGCCCCTTGTCCCCCGAGAATGCCGCGGCGCTCGAGGTAAGGA
TGGACCACACAATAAATTTCAAGACAAAAAATTGTATCTAGAAGAAAGAA
TATTCACAGATGAATGTATTTAGTAAATTGATACGAATGGATTTACAAAA
TAATTGTCAAGCATTTTTCGTGTCAAAAGGGTAATAAAAAATAAAAATAG
AAGAGGGGGCTCCGGCGAGGCCGCCGGTTAATGCTGAGCTCAAAACTGCC
GTTCGTTCGTGCGCACGGTGCTTTTGATCGCTTTCGGCAGAGTCGCGCGT
GCGCCTTAGGCGGGGGGATGTCGACTACTAGACTACCACGCTGCTGTTGT
AGTGTTCCCCCGCCTTTTTACGAGTACATTGCTCTCTCTCTCTCTCGTCA
CACACACGGCCTCATGATGAGTGTTGGATCGTCTGCGTCTGTTCGTTTGG
ATGTGGCCACCACAGGAAGCGATGGAAAAGGTTGGGAAATACCGCGAGAG
GGTCGTCATCCTCAAGGAGGACCGCCGGTCCAAGAAAGCCCTGGTA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1383:23725..26520+ >mRNA_L-elsbetiae_contig1383.2896.1 ID=mRNA_L-elsbetiae_contig1383.2896.1|Name=mRNA_L-elsbetiae_contig1383.2896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig1383:23725..26520+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGTCCGCTTAGCTCACGCCGCAGCGGCGGCCGCAGCGACCTCAGGAG
AGTCCCGCTCAAGAAGAGAAGCCAATCTCTCGGAGAGAAAATGGCTCTGG
CGGTGTCGAACCCTACGAGGGAACCCCCCCCTCCGAGCAAGCTCATGCTG
TACCACGTCTCGAGGCCGGAGCCGCGAGGGCCGTCCGCTTAGCTCACGCC
GCAGCGGCGGCCGCAGCGACCTCAGGAGAGTCCCGCTCAAGAAGAGAAGC
CAATCTCTCGGAGAGAAAATGGCTCTGGCGGTGTCGAACCCTACGAGGGA
ACCCCCCCCTCCGAGCAAGCTCATGCTGTACCACGTCTCGAGGCCGGAGC
CGCGAGCCCGGTGGGTGTTCAACCTTTCGAAGCACACGAACGTCGTGGAC
AACAATGCCCCTCCCGAAGCCATCACCTCCACCATCGACAAGAACAGGCC
GAACCTGGGCGGCCTGGTGTGGATCAACGCCGTGGAGGGGAATCTCCACT
GCTGCCTACAGAAGGGCGTGAAAAATAAGGCGGTTACTCCTGTGCCCGCC
GAGGTTCTGGACGGCTGGCTCAATGGACAGACGGGGTTCTGGTGGATTGG
CGCCCTGAAGGAGGGCCACCGGGCGCTGTGGGACTCTCACGTAGTGATGA
ACTGGGCCATGGTGTTCATCCCCTCGTCACCCGAGCCCGGTGGGTGTTCA
ACCTTTCGAAGCACACGAACGTCGTGGACAACAATGCCCCTCCCGAAGCC
ATCACCTCCACCATCGACAAGAACAGGCCGAACCTGGGCGGCCTGGTGTG
GATCAACGCCGTGGAGGGGAATCTCCACTGCTGCCTACAGAAGGGCGTGA
AAAATAAGGCGGTTACTCCTGTGCCCGCCGAGGTTCTGGACGGCTGGCTC
AATGGACAGACGGGGTTCTGGTGGATTGGCGCCCTGAAGGAGGGCCACCG
GGCGCTGTGGGACTCTCACGTAGTGATGAACTGGGCCATGGTGTTCATCC
CCTCGTCACCCGAGGTTGCCGCCCGGAACAACATGAACGTGTGGCGCGAC
AAGTGCCTCCCGGGCAGCCTGCGCGTGGCCCGCCCCGGCGAGCTCGCCCG
CAAGATCCTGGACATCGTGGCGGACGACCAGGACAAGGAACCCGACCAAC
TGGTGCACACCCACCTCTGCATCCTCCTGGCGGAGGGGGACGACCTCGAG
CTGCGGCGCCCCAAGATGTTCCAGGCGCCGACCCCGACCCCTTCGTTGCC
GCCCGGAACAACATGAACGTGTGGCGCGACAAGTGCCTCCCGGGCAGCCT
GCGCGTGGCCCGCCCCGGCGAGCTCGCCCGCAAGATCCTGGACATCGTGG
CGGACGACCAGGACAAGGAACCCGACCAACTGGTGCACACCCACCTCTGC
ATCCTCCTGGCGGAGGGGGACGACCTCGAGCTGCGGCGCCCCAAGATGTT
CCAGGCGCCGACCCCGACCCCTTCGCAGGCGGGCCTGGAGAGGGACGGGG
CCCCTGGGTCTCGCCCGGCCAGCGCACGGGGGTTGCGGCCTGGTAGCGCC
GGGGGGGGCGGAGGAGCTGACCCGGCGCTGGGCCCCTTGTCCCCCGAGAA
TGCCGCGGCGCTCGAGGCAGGCGGGCCTGGAGAGGGACGGGGCCCCTGGG
TCTCGCCCGGCCAGCGCACGGGGGTTGCGGCCTGGTAGCGCCGGGGGGGG
CGGAGGAGCTGACCCGGCGCTGGGCCCCTTGTCCCCCGAGAATGCCGCGG
CGCTCGAGGAAGCGATGGAAAAGGTTGGGAAATACCGCGAGAGGGTCGTC
ATCCTCAAGGAGGACCGCCGGTCCAAGAAAGCCCTGGTAGAAGCGATGGA
AAAGGTTGGGAAATACCGCGAGAGGGTCGTCATCCTCAAGGAGGACCGCC
GGTCCAAGAAAGCCCTGGTA back to top
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