mRNA_L-elsbetiae_contig13829.2894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13829.2894.1
Unique NamemRNA_L-elsbetiae_contig13829.2894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13829.2894.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 4.800e-58
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = -2 
Query:  114 PASLVSGARRRYSRWRRGRFSAFLSRAGVPCEVDVTHAALQRAAGEVVRDFGGVRVGQRVETAYGEGRVLGSLRGDVWFALDGDDSGAWYWTREELSDLLNSARVRLVEGDGDA 455
            P SLV GARRRYS+WRRGRFSAF SRAGV CEVDVTHAALQ AAG V  DFGG+RVGQRVET YGEGRVLGSLR DVWF LDGDDSGAWYWTREELSDLLNSAR+RL+EGDGDA
Sbjct: 7712 PQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVETPYGEGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNSARLRLIEGDGDA 7825
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BLAST of mRNA_L-elsbetiae_contig13829.2894.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.660e-50
Identity = 89/102 (87.25%), Postives = 91/102 (89.22%), Query Frame = -2 
Query:  150 PASLVSGARRRYSRWRRGRFSAFLSRAGVPCEVDVTHAALQRAAGEVVRDFGGVRVGQRVETAYGEGRVLGSLRGDVWFALDGDDSGAWYWTREELSDLLNS 455
            P SLV GARRRYS+WRRGRFSAF SRAGV CEVDVTHAALQ AAG V  DFGG+RVGQRVET YGEGRVLGSLR DVWF LDGDDSGAWYWTREELSDLLNS
Sbjct: 7110 PQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVETPYGEGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNS 7211
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BLAST of mRNA_L-elsbetiae_contig13829.2894.1 vs. uniprot
Match: A0A7S3XW96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW96_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 2.830e-19
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = -2 
Query:  108 PASLVSGARRRYSRWRRGRFSAFLSRAGVPCEVDVTHAALQRAAGEVVRDFGGVRVGQRVETAYGEGRVLGSLRGDVWFALDGDDSGAWYWTREELSDLLNSARVRLVEGDGDAAA 455
            P  ++      + +W+  + + ++SRAGV  E+   HA L   AGE   +  G+ VG+R  T YG+G+V+GS RG+VW+A+D  + GA+YW R ELS L+ S  +   E   +AAA
Sbjct:  248 PDWILRATHELFRKWKAQKETVYMSRAGVDVEIQTDHALLMECAGEA-GETAGLAVGRRFTTPYGDGQVVGSARGNVWYAMDNQERGAFYWNRTELSVLMGSGTLNFQEPADEAAA 362
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BLAST of mRNA_L-elsbetiae_contig13829.2894.1 vs. uniprot
Match: A0A7S2GZQ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZQ4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.990e-5
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = -2 
Query:  156 ETAYGEGRVLGSLRGDVWFALDGDDSGAWYWTREELSDLL 275
            E   G+  VLG+  G++W+ +D ++SGAWYWT EE + L+
Sbjct:    1 EMERGDAEVLGAYGGNLWYRVDSEESGAWYWTPEEAAGLV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13829.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE4.800e-5886.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI1.660e-5087.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XW96_HETAK2.830e-1938.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2GZQ4_9STRA7.990e-545.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13829contigL-elsbetiae_contig13829:1934..2389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.586353-CDS-L-elsbetiae_contig13829:1933..23561622815542.586353-CDS-L-elsbetiae_contig13829:1933..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13829 1934..2356 +
1691682949.67594-CDS-L-elsbetiae_contig13829:1933..23561691682949.67594-CDS-L-elsbetiae_contig13829:1933..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13829 1934..2356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.599728-UTR-L-elsbetiae_contig13829:2356..23891622815542.599728-UTR-L-elsbetiae_contig13829:2356..2389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13829 2357..2389 +
1691682949.6929927-UTR-L-elsbetiae_contig13829:2356..23891691682949.6929927-UTR-L-elsbetiae_contig13829:2356..2389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13829 2357..2389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13829.2894.1prot_L-elsbetiae_contig13829.2894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13829 1934..2356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13829.2894.1

>prot_L-elsbetiae_contig13829.2894.1 ID=prot_L-elsbetiae_contig13829.2894.1|Name=mRNA_L-elsbetiae_contig13829.2894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
GESLAGAGAETLAAASLSPACAGGAGGLLAPPADPAAAASPSPSTRRTRA
LLRRSDSSSRVQYHAPESSPSRANHTSPRREPSTLPSPYAVSTRCPTRTP
PKSLTTSPAARCSAACVTSTSQGTPARERKALKRPRLHLE*
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mRNA from alignment at L-elsbetiae_contig13829:1934..2389+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13829.2894.1 ID=mRNA_L-elsbetiae_contig13829.2894.1|Name=mRNA_L-elsbetiae_contig13829.2894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig13829:1934..2389+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAATCGCTCGCAGGCGCCGGTGCTGAGACGCTAGCGGCAGCATCGTT
ATCCCCTGCCTGCGCGGGAGGAGCGGGAGGGCTGCTGGCCCCGCCCGCAG
ACCCGGCGGCGGCGGCATCCCCGTCCCCCTCGACCAGGCGAACGCGGGCG
CTGTTGAGAAGGTCCGACAGCTCCTCGCGGGTCCAGTACCACGCGCCGGA
GTCGTCCCCGTCGAGGGCGAACCACACGTCCCCCCGGAGGGAGCCCAGCA
CCCTCCCTTCCCCGTACGCCGTCTCCACGCGCTGCCCGACCCGGACGCCG
CCGAAGTCTCTCACCACCTCTCCCGCCGCCCGCTGCAGCGCGGCGTGCGT
GACGTCGACTTCGCAGGGAACTCCGGCCCGGGAGAGGAAGGCGCTGAAGC
GGCCGCGCCTCCACCTGGAGTAGCGGCGGCGGGCGCCGCTGACGAGCGAG
GCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13829:1934..2389+

>mRNA_L-elsbetiae_contig13829.2894.1 ID=mRNA_L-elsbetiae_contig13829.2894.1|Name=mRNA_L-elsbetiae_contig13829.2894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig13829:1934..2389+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAATCGCTCGCAGGCGCCGGTGCTGAGACGCTAGCGGCAGCATCGTT
ATCCCCTGCCTGCGCGGGAGGAGCGGGAGGGCTGCTGGCCCCGCCCGCAG
ACCCGGCGGCGGCGGCATCCCCGTCCCCCTCGACCAGGCGAACGCGGGCG
CTGTTGAGAAGGTCCGACAGCTCCTCGCGGGTCCAGTACCACGCGCCGGA
GTCGTCCCCGTCGAGGGCGAACCACACGTCCCCCCGGAGGGAGCCCAGCA
CCCTCCCTTCCCCGTACGCCGTCTCCACGCGCTGCCCGACCCGGACGCCG
CCGAAGTCTCTCACCACCTCTCCCGCCGCCCGCTGCAGCGCGGCGTGCGT
GACGTCGACTTCGCAGGGAACTCCGGCCCGGGAGAGGAAGGCGCTGAAGC
GGCCGCGCCTCCACCTGGAGTAGGGCGAATCGCTCGCAGGCGCCGGTGCT
GAGACGCTAGCGGCAGCATCGTTATCCCCTGCCTGCGCGGGAGGAGCGGG
AGGGCTGCTGGCCCCGCCCGCAGACCCGGCGGCGGCGGCATCCCCGTCCC
CCTCGACCAGGCGAACGCGGGCGCTGTTGAGAAGGTCCGACAGCTCCTCG
CGGGTCCAGTACCACGCGCCGGAGTCGTCCCCGTCGAGGGCGAACCACAC
GTCCCCCCGGAGGGAGCCCAGCACCCTCCCTTCCCCGTACGCCGTCTCCA
CGCGCTGCCCGACCCGGACGCCGCCGAAGTCTCTCACCACCTCTCCCGCC
GCCCGCTGCAGCGCGGCGTGCGTGACGTCGACTTCGCAGGGAACTCCGGC
CCGGGAGAGGAAGGCGCTGAAGCGGCCGCGCCTCCACCTGGAGTAG
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