mRNA_L-elsbetiae_contig13828.2893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13828.2893.1
Unique NamemRNA_L-elsbetiae_contig13828.2893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13828.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13828contigL-elsbetiae_contig13828:2867..3050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size170
Cds size105
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13828.2893.1prot_L-elsbetiae_contig13828.2893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13828 2932..3050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.5217679-UTR-L-elsbetiae_contig13828:2866..29311622815542.5217679-UTR-L-elsbetiae_contig13828:2866..2931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13828 2867..2931 +
1691682949.641023-UTR-L-elsbetiae_contig13828:2866..29311691682949.641023-UTR-L-elsbetiae_contig13828:2866..2931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13828 2867..2931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.5333638-CDS-L-elsbetiae_contig13828:2931..29491622815542.5333638-CDS-L-elsbetiae_contig13828:2931..2949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13828 2932..2949 +
1691682949.654944-CDS-L-elsbetiae_contig13828:2931..29491691682949.654944-CDS-L-elsbetiae_contig13828:2931..2949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13828 2932..2949 +
1622815542.54855-CDS-L-elsbetiae_contig13828:2963..30501622815542.54855-CDS-L-elsbetiae_contig13828:2963..3050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13828 2964..3050 +
1691682949.663382-CDS-L-elsbetiae_contig13828:2963..30501691682949.663382-CDS-L-elsbetiae_contig13828:2963..3050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13828 2964..3050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13828.2893.1

>prot_L-elsbetiae_contig13828.2893.1 ID=prot_L-elsbetiae_contig13828.2893.1|Name=mRNA_L-elsbetiae_contig13828.2893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
MTKNNGSLIPRHLARARCILHSSSDLPLCRVSKTH
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mRNA from alignment at L-elsbetiae_contig13828:2867..3050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13828.2893.1 ID=mRNA_L-elsbetiae_contig13828.2893.1|Name=mRNA_L-elsbetiae_contig13828.2893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=184bp|location=Sequence derived from alignment at L-elsbetiae_contig13828:2867..3050+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGTGTTTCGGGCGTTTTGCTACAGAGGATTGATCACCTTCTGTGGCG
GATTGGTGTGCAGGAATGACGAAAAACAACGGAGTAGCTACCCATGTTCT
CTCATTCCCCGTCATCTTGCACGTGCACGTTGTATTCTCCACAGCAGCAG
TGATTTGCCTTTGTGTCGGGTATCGAAAACTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13828:2867..3050+

>mRNA_L-elsbetiae_contig13828.2893.1 ID=mRNA_L-elsbetiae_contig13828.2893.1|Name=mRNA_L-elsbetiae_contig13828.2893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig13828:2867..3050+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGAAAAACAACGGAATGACGAAAAACAACGGATCTCTCATTCCCCG
TCATCTTGCACGTGCACGTTGTATTCTCCACAGCAGCAGTGATTTGCCTT
TGTGTCGGGTATCGAAAACTCACTCTCTCATTCCCCGTCATCTTGCACGT
GCACGTTGTATTCTCCACAGCAGCAGTGATTTGCCTTTGTGTCGGGTATC
GAAAACTCAC
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