mRNA_L-elsbetiae_contig1382.2890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1382.2890.1
Unique NamemRNA_L-elsbetiae_contig1382.2890.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1382.2890.1 vs. uniprot
Match: D7G5H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H2_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.420e-34
Identity = 125/278 (44.96%), Postives = 141/278 (50.72%), Query Frame = 1 
Query:   49 LPPKLTIDADDFAVRVPAKGSSVRSELSRGLSPAGSQGSFVATRVYAPLSVGGDQGAFSRDGAAWALEGSDEDQR--SPGNEPAMFQVSIAASRFLSSPIN-ALGAHLRSPSASSGITAAASTAAALPPANVNDTGSGXXXXXXXXXXXXXXXXXXSAVVPVGAAAAYMGFSQDLTGMAVA------EGRPRSP----------SGFSEAAGXXXXXXXXXXXXXXXXXXXFNYRNESRGGAGAARNSSGLALE-PATPMSAAGSRFDALSPGSEMTF 822
            +PPKLTIDA DFAVRVP KG+SVRSELSRGLSPAGSQ S V TRVYAP SVGG   A     A    +  D  Q   SP NE AM QVSIAASRFLSSP+N   G   R  SASSG+T  ++  AA         GSG                  S VVPVGAA   MG SQDL+G+         E   RSP          +GFS+AA                          + G  G      GLA++ P++P SAA SRFD  SP S  TF
Sbjct:  384 VPPKLTIDAGDFAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGGGDQASVVRVACVGADTPDVAQALASPTNESAMSQVSIAASRFLSSPVNNPFGPQFRGQSASSGLTGVSAGTAA---------GSG------------------SGVVPVGAARKDMGISQDLSGLTPTRTGRGGEDGARSPGAFSVAGRSEAGFSDAASRYDNSFAASRESGVSLAGRVGLTTGA-GAGGPPTRLDGLAIQQPSSPNSAAASRFDTSSPASATTF 633
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BLAST of mRNA_L-elsbetiae_contig1382.2890.1 vs. uniprot
Match: A0A6H5KVJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 8.690e-33
Identity = 121/278 (43.53%), Postives = 137/278 (49.28%), Query Frame = 1 
Query:   49 LPPKLTIDADDFAVRVPAKGSSVRSELSRGLSPAGSQGSFVATRVYAPLSVGGDQGAFSRDGAAWALEGSDEDQRSPGNEPAMFQVSIAASRFLSSPI-NALGAHLRSPSASSGITAAASTAAALPPANVNDTGSGXXXXXXXXXXXXXXXXXXSAVVPVGAAAAYMGFSQDLTGMAV------AEGRPRSPSGFSEAAGXXXXXXXXXXXXXXXXXXXFNYRNESRGGAGAARNSSG------------LALE-PATPMSAAGSRFDALSPGSEMTF 822
            +PPKLTIDA D+AVRVP KG+SVRSELSRGLSPAGSQ S V TRVYAP SVGG   A S + A        +   SP NE AM QVSIAASRFLSSP+ N  G      SASSG+T  ++  AA         GSG                  S VVPVGAA   MG SQDL+GM         E   RSP  FS A                             G  G    ++G            LA++ P++P SAA SRFD  SP S  TF
Sbjct:  139 VPPKLTIDAGDYAVRVPVKGTSVRSELSRGLSPAGSQASSVVTRVYAPSSVGGGDQARSPNMA--------QTFASPTNESAMSQVSIAASRFLSSPVDNRFGPQFHGQSASSGLTGVSAGTAA---------GSG------------------SGVVPVGAARKDMGISQDLSGMTPPRMGLGGEDGARSPGAFSVAGRSEAGFSDAASRYDNSFAASRESGVSLAGRVGLTAGTAGXXXXXPPTCLDALAIQHPSSPNSAAASRFDTSSPASATTF 381
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1382.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5H2_ECTSI2.420e-3444.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVJ4_9PHAE8.690e-3343.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1382contigL-elsbetiae_contig1382:21970..23519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000590.1
Exons2
Model size823
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.3424602-CDS-L-elsbetiae_contig1382:21969..222211622815542.3424602-CDS-L-elsbetiae_contig1382:21969..22221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 21970..22221 +
1691682949.5725734-CDS-L-elsbetiae_contig1382:21969..222211691682949.5725734-CDS-L-elsbetiae_contig1382:21969..22221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 21970..22221 +
1622815542.3572767-CDS-L-elsbetiae_contig1382:22948..235181622815542.3572767-CDS-L-elsbetiae_contig1382:22948..23518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 22949..23518 +
1691682949.5836785-CDS-L-elsbetiae_contig1382:22948..235181691682949.5836785-CDS-L-elsbetiae_contig1382:22948..23518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 22949..23518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1382.2890.1prot_L-elsbetiae_contig1382.2890.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1382 21970..23518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1382.2890.1

>prot_L-elsbetiae_contig1382.2890.1 ID=prot_L-elsbetiae_contig1382.2890.1|Name=mRNA_L-elsbetiae_contig1382.2890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp
ASAASAGSGGGFGFGVLPPKLTIDADDFAVRVPAKGSSVRSELSRGLSPA
GSQGSFVATRVYAPLSVGGDQGAFSRDGAAWALEGSDEDQRSPGNEPAMF
QVSIAASRFLSSPINALGAHLRSPSASSGITAAASTAAALPPANVNDTGS
GSRGGSGGGADAMTAAGSGSAVVPVGAAAAYMGFSQDLTGMAVAEGRPRS
PSGFSEAAGRSEAGFSDAASRYDSGMSSFNYRNESRGGAGAARNSSGLAL
EPATPMSAAGSRFDALSPGSEMTF
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mRNA from alignment at L-elsbetiae_contig1382:21970..23519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1382.2890.1 ID=mRNA_L-elsbetiae_contig1382.2890.1|Name=mRNA_L-elsbetiae_contig1382.2890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1550bp|location=Sequence derived from alignment at L-elsbetiae_contig1382:21970..23519+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAGCGCCGCCAGCGCCGGGTCCGGCGGCGGCTTCGGGTTCGGGGTGCT
GCCGCCCAAGCTCACTATCGATGCTGACGATTTCGCCGTCCGGGTGCCGG
CCAAGGGCTCCTCCGTGCGCAGCGAGCTCTCCCGGGGGCTGTCGCCGGCG
GGGTCGCAGGGCTCCTTCGTGGCGACGCGAGTGTACGCGCCGTTGTCGGT
GGGGGGTGACCAGGGCGCGTTCTCGCGTGACGGGGCTGCGTGGGCACTGG
AGGTATGTATCTTAGTTGTTCGTATATCTAAGTTGTTTCTTCACATTAGA
TAGCTCGCATAGTCGAGATTGCTACATAATTCCAAAAATCCATGTAGCAA
CTCACGGCCCGTGGTCACAGAAGTGCTGGAGGGAGCCACCAGAAGACTGG
AAAAAGACGCACGCAGATGCCTATGTACCTGTATGTGCAGCTGTGGGTGC
TGGACGGAATGGAGGGGGGGGGGGGCCAAAAGAGGGGGTTCACGTTGCTT
GCAGTTGAGGCGGCGATTTTCGCTGGCCCATACTAAAGANNNNNNNNNNG
GGGGGGGGGCGGCAAGGGGAAGGAGGGAGAGCGGGCGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGCAACAGAGGTGGTCACCGTGGCTTGCTGTTGAGGCGGCGTTGTT
GGCTGGCCCATACTAAAGAGGAAGAAGTCGTTCCGCTCCTTGGTTGATAT
CTAAGTATTCGAGGAGTTTTCTTGTTTCTACTTGTCGCACCGAGACCTTG
TGTGTGTGTGTGTGACTAGGTTGGCAATTTTGCGGCGGCGGCGGCGAAAG
CTGCGCGATTGCTTTTCGCGCTCGGAGTAAACATCGACCAACGAATATTT
TTCCTTTTCCCGCGGGACAGAAAAAGTTGATGGGATCGCTTTCCTCCTTC
CGCTTTGCCTTTTCTCGCTTTCGTCGCAGGGATCGGACGAAGACCAGCGC
TCCCCGGGCAACGAGCCCGCCATGTTCCAGGTGTCCATCGCCGCGTCGCG
GTTCCTCTCCTCCCCGATAAACGCTCTCGGCGCTCATCTCCGCTCCCCGA
GTGCGAGCTCGGGGATCACGGCAGCCGCCTCCACGGCAGCAGCCTTGCCC
CCTGCCAACGTCAACGACACCGGCAGTGGTAGCCGCGGCGGCAGCGGCGG
CGGTGCCGACGCCATGACCGCGGCGGGCTCCGGCTCGGCCGTGGTCCCGG
TGGGCGCTGCGGCAGCCTATATGGGCTTCTCTCAGGACCTCACCGGCATG
GCCGTAGCCGAGGGGAGACCACGCTCGCCCAGCGGCTTCTCCGAAGCCGC
CGGCCGGTCGGAGGCCGGCTTCTCGGACGCAGCGTCTCGCTACGACAGCG
GCATGTCGTCGTTCAACTACCGTAACGAGTCGCGGGGCGGCGCGGGCGCC
GCCCGCAATTCGAGCGGGCTGGCGCTTGAGCCGGCGACGCCCATGTCGGC
CGCTGGCTCAAGGTTCGACGCCTTGTCTCCAGGGTCGGAGATGACCTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1382:21970..23519+

>mRNA_L-elsbetiae_contig1382.2890.1 ID=mRNA_L-elsbetiae_contig1382.2890.1|Name=mRNA_L-elsbetiae_contig1382.2890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig1382:21970..23519+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAGCGCCGCCAGCGCCGGGTCCGGCGGCGGCTTCGGGTTCGGGGTGCT
GCCGCCCAAGCTCACTATCGATGCTGACGATTTCGCCGTCCGGGTGCCGG
CCAAGGGCTCCTCCGTGCGCAGCGAGCTCTCCCGGGGGCTGTCGCCGGCG
GGGTCGCAGGGCTCCTTCGTGGCGACGCGAGTGTACGCGCCGTTGTCGGT
GGGGGGTGACCAGGGCGCGTTCTCGCGTGACGGGGCTGCGTGGGCACTGG
AGGCTAGCGCCGCCAGCGCCGGGTCCGGCGGCGGCTTCGGGTTCGGGGTG
CTGCCGCCCAAGCTCACTATCGATGCTGACGATTTCGCCGTCCGGGTGCC
GGCCAAGGGCTCCTCCGTGCGCAGCGAGCTCTCCCGGGGGCTGTCGCCGG
CGGGGTCGCAGGGCTCCTTCGTGGCGACGCGAGTGTACGCGCCGTTGTCG
GTGGGGGGTGACCAGGGCGCGTTCTCGCGTGACGGGGCTGCGTGGGCACT
GGAGGGATCGGACGAAGACCAGCGCTCCCCGGGCAACGAGCCCGCCATGT
TCCAGGTGTCCATCGCCGCGTCGCGGTTCCTCTCCTCCCCGATAAACGCT
CTCGGCGCTCATCTCCGCTCCCCGAGTGCGAGCTCGGGGATCACGGCAGC
CGCCTCCACGGCAGCAGCCTTGCCCCCTGCCAACGTCAACGACACCGGCA
GTGGTAGCCGCGGCGGCAGCGGCGGCGGTGCCGACGCCATGACCGCGGCG
GGCTCCGGCTCGGCCGTGGTCCCGGTGGGCGCTGCGGCAGCCTATATGGG
CTTCTCTCAGGACCTCACCGGCATGGCCGTAGCCGAGGGGAGACCACGCT
CGCCCAGCGGCTTCTCCGAAGCCGCCGGCCGGTCGGAGGCCGGCTTCTCG
GACGCAGCGTCTCGCTACGACAGCGGCATGTCGTCGTTCAACTACCGTAA
CGAGTCGCGGGGCGGCGCGGGCGCCGCCCGCAATTCGAGCGGGCTGGCGC
TTGAGCCGGCGACGCCCATGTCGGCCGCTGGCTCAAGGTTCGACGCCTTG
TCTCCAGGGTCGGAGATGACCTTTGGATCGGACGAAGACCAGCGCTCCCC
GGGCAACGAGCCCGCCATGTTCCAGGTGTCCATCGCCGCGTCGCGGTTCC
TCTCCTCCCCGATAAACGCTCTCGGCGCTCATCTCCGCTCCCCGAGTGCG
AGCTCGGGGATCACGGCAGCCGCCTCCACGGCAGCAGCCTTGCCCCCTGC
CAACGTCAACGACACCGGCAGTGGTAGCCGCGGCGGCAGCGGCGGCGGTG
CCGACGCCATGACCGCGGCGGGCTCCGGCTCGGCCGTGGTCCCGGTGGGC
GCTGCGGCAGCCTATATGGGCTTCTCTCAGGACCTCACCGGCATGGCCGT
AGCCGAGGGGAGACCACGCTCGCCCAGCGGCTTCTCCGAAGCCGCCGGCC
GGTCGGAGGCCGGCTTCTCGGACGCAGCGTCTCGCTACGACAGCGGCATG
TCGTCGTTCAACTACCGTAACGAGTCGCGGGGCGGCGCGGGCGCCGCCCG
CAATTCGAGCGGGCTGGCGCTTGAGCCGGCGACGCCCATGTCGGCCGCTG
GCTCAAGGTTCGACGCCTTGTCTCCAGGGTCGGAGATGACCTTT
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