mRNA_L-elsbetiae_contig1382.2889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1382.2889.1
Unique NamemRNA_L-elsbetiae_contig1382.2889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1382.2889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1382contigL-elsbetiae_contig1382:18528..19018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size491
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.3928528-UTR-L-elsbetiae_contig1382:18527..186521622815542.3928528-UTR-L-elsbetiae_contig1382:18527..18652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1382 18528..18652 +
1691682949.6009743-UTR-L-elsbetiae_contig1382:18527..186521691682949.6009743-UTR-L-elsbetiae_contig1382:18527..18652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1382 18528..18652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.4083376-CDS-L-elsbetiae_contig1382:18652..190181622815542.4083376-CDS-L-elsbetiae_contig1382:18652..19018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 18653..19018 +
1691682949.6099448-CDS-L-elsbetiae_contig1382:18652..190181691682949.6099448-CDS-L-elsbetiae_contig1382:18652..19018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1382 18653..19018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1382.2889.1prot_L-elsbetiae_contig1382.2889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1382 18653..19018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1382.2889.1

>prot_L-elsbetiae_contig1382.2889.1 ID=prot_L-elsbetiae_contig1382.2889.1|Name=mRNA_L-elsbetiae_contig1382.2889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MGTNLLSAKTYCCCRPAFQRVLARTTRQCSTGYRLMIAGNYIHMWCVDIY
EVYTDRGSDSEESHRRQDNKALLPLHLQTAPLSMPSSLALPTSDISVPGL
WQVLLYICSPPLFPDVFERKRE
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mRNA from alignment at L-elsbetiae_contig1382:18528..19018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1382.2889.1 ID=mRNA_L-elsbetiae_contig1382.2889.1|Name=mRNA_L-elsbetiae_contig1382.2889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig1382:18528..19018+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCAGTCAGTGGGGAAGTCGAGCAGCGGCTCTGTCAAAAAGAACACGGG
AAAAAAACACCCAAACACTAGAAATAGGGACCAAAAATACATATTTCCCA
CTGCTGTAGCTTGTTCGCCTGTCGCATGGGCACCAACCTTCTGAGCGCTA
AGACCTACTGCTGCTGCAGACCCGCATTTCAGAGGGTGCTCGCGAGGACC
ACCAGGCAGTGTTCGACGGGGTATAGATTGATGATTGCGGGCAATTACAT
ACATATGTGGTGTGTAGATATATACGAAGTATATACAGACAGAGGGTCAG
ATTCAGAAGAGAGCCACAGGCGCCAAGACAACAAGGCCCTGCTGCCCCTC
CACCTACAGACTGCACCTTTGTCGATGCCATCCAGCCTGGCGCTGCCGAC
TTCCGACATTTCAGTGCCAGGGCTTTGGCAGGTGCTGTTGTATATATGTA
GCCCACCGTTGTTCCCCGATGTATTCGAGCGAAAGAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1382:18528..19018+

>mRNA_L-elsbetiae_contig1382.2889.1 ID=mRNA_L-elsbetiae_contig1382.2889.1|Name=mRNA_L-elsbetiae_contig1382.2889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1382:18528..19018+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCACCAACCTTCTGAGCGCTAAGACCTACTGCTGCTGCAGACCCGC
ATTTCAGAGGGTGCTCGCGAGGACCACCAGGCAGTGTTCGACGGGGTATA
GATTGATGATTGCGGGCAATTACATACATATGTGGTGTGTAGATATATAC
GAAGTATATACAGACAGAGGGTCAGATTCAGAAGAGAGCCACAGGCGCCA
AGACAACAAGGCCCTGCTGCCCCTCCACCTACAGACTGCACCTTTGTCGA
TGCCATCCAGCCTGGCGCTGCCGACTTCCGACATTTCAGTGCCAGGGCTT
TGGCAGGTGCTGTTGTATATATGTAGCCCACCGTTGTTCCCCGATGTATT
CGAGCGAAAGAGAGAGATGGGCACCAACCTTCTGAGCGCTAAGACCTACT
GCTGCTGCAGACCCGCATTTCAGAGGGTGCTCGCGAGGACCACCAGGCAG
TGTTCGACGGGGTATAGATTGATGATTGCGGGCAATTACATACATATGTG
GTGTGTAGATATATACGAAGTATATACAGACAGAGGGTCAGATTCAGAAG
AGAGCCACAGGCGCCAAGACAACAAGGCCCTGCTGCCCCTCCACCTACAG
ACTGCACCTTTGTCGATGCCATCCAGCCTGGCGCTGCCGACTTCCGACAT
TTCAGTGCCAGGGCTTTGGCAGGTGCTGTTGTATATATGTAGCCCACCGT
TGTTCCCCGATGTATTCGAGCGAAAGAGAGAG
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