mRNA_L-elsbetiae_contig13816.2888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13816.2888.1
Unique NamemRNA_L-elsbetiae_contig13816.2888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13816.2888.1 vs. uniprot
Match: A0A6H5KPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW3_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 8.730e-82
Identity = 187/402 (46.52%), Postives = 224/402 (55.72%), Query Frame = 1 
Query:    1 DDGAERMFATARALHLRRHRSPASRGLALELFRETLRRRPAWKETDSRFAMESGIDEVFKKSFSCP------------NGTSKRKTGDNGDVRCLRTTLDRIGYTARTVQERFGVASGQRLPGPYYLRKSFDHKNADVVASMGPPKDALDVAIRLFLLGLALPRAQAERRLGRGFLESADRLGMIGECPVDPLLLVSLVQLFPLDAEALSPPLPLPDGDTNQESNQGLRVKHATESVSGARNSSGDDSSSKFGDGYGGSSRVSEEGISLGGRGGSFSNSRDEAPPLAAGGSQQEPQR-DGNAAAVPGERPQDRENGRGGSKSGA------------PAATAXXXXXXXXXXXXXXXXXXXXXXXXAGVVAVSDLIFATDWPPPGSTAMAEEPVSYSGRCSWG 1131
            +D AERMFA A +LHLRRHRS ASR +AL++FRETLR RPAWKETD+RFA+ESGID+VF+  FSC             NG    +TG+  DVR LR+TL RIGY ART+Q RFG++  +RLPGPYYL K+ DH +A VVASMGP KDALDVAIRLFLLG+ALPRA  E  LG  FL + DRLGM+GECPVDPLL+VSLVQLFPLD EAL P                  V   T  +  + +  GD S       + G S   + G S                      S+   +R +G   A  G   +D     GG+++G             P  T                          GVVA SD++FATDWPPPGSTA+ EEPV Y G  S G
Sbjct:  124 EDRAERMFAIAGSLHLRRHRSRASRRIALKIFRETLRLRPAWKETDTRFAVESGIDDVFQ-GFSCEYVQATPTGSPPKNGPGISRTGNREDVRRLRSTLARIGYNARTIQRRFGISDARRLPGPYYLLKNLDHNHAAVVASMGPAKDALDVAIRLFLLGVALPRAHVEGALGLDFLAAVDRLGMVGECPVDPLLMVSLVQLFPLDGEALLPXXXXXXXXXX------XGVTAPTCPIRTSPSVDGDPS-------FPGKSLEPDNGSSSWSXXXXXXXXXXXXXXXXXXXSKDTKKRSEGTDTASGGRIDRDGSRTCGGAQTGLRSPSLYQQQAHRPGGTYSSEVDGEIDGPVPAETATTSHAANWGVVAASDMVFATDWPPPGSTALTEEPVMYIGPDSIG 511
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BLAST of mRNA_L-elsbetiae_contig13816.2888.1 vs. uniprot
Match: D8LCV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV5_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 7.630e-81
Identity = 142/207 (68.60%), Postives = 164/207 (79.23%), Query Frame = 1 
Query:   19 MFATARALHLRRHRSPASRGLALELFRETLRRRPAWKETDSRFAMESGIDEVFKKSFSC------PNGTSKR------KTGDNGDVRCLRTTLDRIGYTARTVQERFGVASGQRLPGPYYLRKSFDHKNADVVASMGPPKDALDVAIRLFLLGLALPRAQAERRLGRGFLESADRLGMIGECPVDPLLLVSLVQLFPLDAEALSPPL 603
            MFA AR+LHLRRHRS ASR +AL++FRETLR RPAWKETD+RFA+ESGID VF++ FSC      P G++ +      +TGD  DVR L   L RIGY ART+Q RFGV+  +RLPGPYYLRK+FDH +A VV+SMGP KDALDVAIRLFLLG+ALPRA  E  LG   LE+ADRLGM+GECPVDPLL+VSLVQLFPLD EAL PPL
Sbjct:    1 MFAIARSLHLRRHRSKASRRIALKIFRETLRLRPAWKETDTRFAVESGIDNVFQE-FSCEYVQATPTGSTPKSGPEINRTGDREDVRRLHAALARIGYNARTIQRRFGVSDARRLPGPYYLRKNFDHNHAAVVSSMGPAKDALDVAIRLFLLGVALPRAHVEGALGLDLLEAADRLGMVGECPVDPLLMVSLVQLFPLDGEALLPPL 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13816.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPW3_9PHAE8.730e-8246.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCV5_ECTSI7.630e-8168.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13816contigL-elsbetiae_contig13816:2597..4609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue9.6e-70
Seed eggNOG ortholog2880.D8LCV5
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Pfam:Methyltransf_26
EggNOG OGs2S3K6@2759,COG2890@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1131
Cds size1113
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13816.2888.1prot_L-elsbetiae_contig13816.2888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13816 2615..4609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.276979-UTR-L-elsbetiae_contig13816:2596..26141622815542.276979-UTR-L-elsbetiae_contig13816:2596..2614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13816 2597..2614 +
1691682949.5413315-UTR-L-elsbetiae_contig13816:2596..26141691682949.5413315-UTR-L-elsbetiae_contig13816:2596..2614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13816 2597..2614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.290819-CDS-L-elsbetiae_contig13816:2614..29651622815542.290819-CDS-L-elsbetiae_contig13816:2614..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13816 2615..2965 +
1691682949.5522833-CDS-L-elsbetiae_contig13816:2614..29651691682949.5522833-CDS-L-elsbetiae_contig13816:2614..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13816 2615..2965 +
1622815542.3048246-CDS-L-elsbetiae_contig13816:3847..46091622815542.3048246-CDS-L-elsbetiae_contig13816:3847..4609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13816 3848..4609 +
1691682949.562112-CDS-L-elsbetiae_contig13816:3847..46091691682949.562112-CDS-L-elsbetiae_contig13816:3847..4609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13816 3848..4609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13816.2888.1

>prot_L-elsbetiae_contig13816.2888.1 ID=prot_L-elsbetiae_contig13816.2888.1|Name=mRNA_L-elsbetiae_contig13816.2888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=371bp
MFATARALHLRRHRSPASRGLALELFRETLRRRPAWKETDSRFAMESGID
EVFKKSFSCPNGTSKRKTGDNGDVRCLRTTLDRIGYTARTVQERFGVASG
QRLPGPYYLRKSFDHKNADVVASMGPPKDALDVAIRLFLLGLALPRAQAE
RRLGRGFLESADRLGMIGECPVDPLLLVSLVQLFPLDAEALSPPLPLPDG
DTNQESNQGLRVKHATESVSGARNSSGDDSSSKFGDGYGGSSRVSEEGIS
LGGRGGSFSNSRDEAPPLAAGGSQQEPQRDGNAAAVPGERPQDRENGRGG
SKSGAPAATAAPAATAAPAATAAAAAAAAASHQAAGVVAVSDLIFATDWP
PPGSTAMAEEPVSYSGRCSWG
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mRNA from alignment at L-elsbetiae_contig13816:2597..4609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13816.2888.1 ID=mRNA_L-elsbetiae_contig13816.2888.1|Name=mRNA_L-elsbetiae_contig13816.2888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2013bp|location=Sequence derived from alignment at L-elsbetiae_contig13816:2597..4609+ (Laminarionema elsbetiae ELsaHSoW15)
GACGATGGCGCGGAGAGGATGTTCGCCACCGCTAGGGCCTTGCACCTCCG
CAGGCACCGATCGCCGGCTTCCCGGGGCCTTGCCCTCGAGCTGTTCCGGG
AAACGCTGCGCCGGCGGCCGGCGTGGAAGGAGACAGACTCGAGGTTCGCG
ATGGAGTCGGGCATCGACGAGGTGTTCAAGAAGTCGTTTTCGTGTCCAAA
TGGCACGTCCAAACGGAAGACCGGCGATAACGGCGACGTCCGCTGCCTCC
GAACGACGCTGGACCGGATTGGGTACACGGCCAGAACTGTGCAAGAGAGG
TTCGGCGTGGCGAGTGGGCAGCGCCTCCCTGGGCCTTACTATTTGCGCAA
GAGCTTCGACCACAAGAATGTGAGCTACCATGTACATAGATCTGCCTTTC
GATGCTAGCAATCCCTCTTATTTGCATTGAAGTATAAGTACAAGCAGTGC
TACACAGCGGCGTAGGCTGTTTGCTGCACCCCTCTCTATGCTTCTTCCAG
AAACGATTGGGAACTACGTCTGTCAGATTGTATATGCGAGCGACTGTAAG
AATTCCACCTCCTCCCCGCTCGACCGCCGTGTTGTTGTCCAGCTTCACAA
TAGCACGCATGTACTCTATCCTATTCGGGTTCCTTTCGTGCCATGTAGTC
TGTGTGCTTCGAGGTACCTTCTGCAATATTCCACAGCCATAAGGTCCTGG
CAACACCAGACCACTGCGGCAACGCACACTTAGGTGCTGCTGACTTCAGT
AGAAAGCAGAGCTAAATACCATCAGAACGATGAAAAGGTAGAGCGCAGCC
CGATACACTCAAATCGGCGCCTGTGAACAGGGACGACGAACAATCTTCAC
GTTTTTGCAAGAAAAAACAATGATTAGAGTCAGCTGCACAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCAGCAGTGGCATGGTACACACCTTCCTTCATT
CGTACACCCATTTTCCCGTTCCACCGCTTGACGCCCACCTCCTCCCTTCC
CCTCCCCTCTCACAAGTTACTGGAAAGAAAATCAGTTATAAAATCAAAAA
TAGAACCTACATATGTACGTAGCCCTTGCCACATAAGAGACGGCAATCCT
GGGGATTCGACCGGTTTCCAACAAAGTGACGTATTATTGGTCCGACCGAA
TAGAACAACCCCTAAATATATAGAATATCCGAAGGGTTCAACATCTCCCC
TGCAAAACTCTGCCAGGTCAATCAACATGTATTCTCTGCCCCCCCCACCA
GGCCGACGTCGTTGCGTCCATGGGTCCGCCCAAAGACGCCCTGGACGTGG
CTATCCGGCTCTTTCTGCTGGGGCTGGCGCTGCCCCGGGCACAGGCGGAG
CGGCGCCTCGGCCGCGGCTTTCTCGAGTCTGCGGACAGGCTCGGCATGAT
CGGGGAGTGTCCGGTCGACCCGCTGCTGCTGGTGTCGCTGGTTCAACTGT
TCCCACTCGACGCGGAAGCGTTGTCGCCGCCGCTGCCGCTGCCAGATGGC
GATACAAATCAGGAGAGCAATCAGGGCCTCCGGGTAAAACACGCAACCGA
GAGTGTTAGTGGTGCTAGAAATAGTAGTGGGGATGATAGCAGCAGCAAAT
TTGGTGATGGGTATGGTGGCAGCAGCAGGGTTAGCGAAGAAGGCATTTCT
CTCGGTGGTCGTGGTGGTAGCTTTAGCAACAGTCGTGACGAGGCGCCACC
TCTCGCGGCCGGTGGTTCTCAACAAGAACCCCAGAGAGACGGGAACGCGG
CGGCGGTGCCGGGGGAGCGGCCGCAGGACCGGGAGAACGGGAGAGGAGGG
TCGAAGAGTGGTGCCCCCGCTGCGACCGCCGCCCCCGCTGCGACCGCCGC
CCCCGCTGCGACCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCACCAAG
CGGCAGGAGTCGTGGCGGTGTCGGACTTGATCTTTGCCACGGACTGGCCT
CCTCCGGGCAGCACGGCCATGGCCGAGGAACCGGTGAGTTACAGCGGGCG
CTGCTCCTGGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13816:2597..4609+

>mRNA_L-elsbetiae_contig13816.2888.1 ID=mRNA_L-elsbetiae_contig13816.2888.1|Name=mRNA_L-elsbetiae_contig13816.2888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2226bp|location=Sequence derived from alignment at L-elsbetiae_contig13816:2597..4609+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCCACCGCTAGGGCCTTGCACCTCCGCAGGCACCGATCGCCGGC
TTCCCGGGGCCTTGCCCTCGAGCTGTTCCGGGAAACGCTGCGCCGGCGGC
CGGCGTGGAAGGAGACAGACTCGAGGTTCGCGATGGAGTCGGGCATCGAC
GAGGTGTTCAAGAAGTCGTTTTCGTGTCCAAATGGCACGTCCAAACGGAA
GACCGGCGATAACGGCGACGTCCGCTGCCTCCGAACGACGCTGGACCGGA
TTGGGTACACGGCCAGAACTGTGCAAGAGAGGTTCGGCGTGGCGAGTGGG
CAGCGCCTCCCTGGGCCTTACTATTTGCGCAAGAGCTTCGACCACAAGAA
TATGTTCGCCACCGCTAGGGCCTTGCACCTCCGCAGGCACCGATCGCCGG
CTTCCCGGGGCCTTGCCCTCGAGCTGTTCCGGGAAACGCTGCGCCGGCGG
CCGGCGTGGAAGGAGACAGACTCGAGGTTCGCGATGGAGTCGGGCATCGA
CGAGGTGTTCAAGAAGTCGTTTTCGTGTCCAAATGGCACGTCCAAACGGA
AGACCGGCGATAACGGCGACGTCCGCTGCCTCCGAACGACGCTGGACCGG
ATTGGGTACACGGCCAGAACTGTGCAAGAGAGGTTCGGCGTGGCGAGTGG
GCAGCGCCTCCCTGGGCCTTACTATTTGCGCAAGAGCTTCGACCACAAGA
ATGCCGACGTCGTTGCGTCCATGGGTCCGCCCAAAGACGCCCTGGACGTG
GCTATCCGGCTCTTTCTGCTGGGGCTGGCGCTGCCCCGGGCACAGGCGGA
GCGGCGCCTCGGCCGCGGCTTTCTCGAGTCTGCGGACAGGCTCGGCATGA
TCGGGGAGTGTCCGGTCGACCCGCTGCTGCTGGTGTCGCTGGTTCAACTG
TTCCCACTCGACGCGGAAGCGTTGTCGCCGCCGCTGCCGCTGCCAGATGG
CGATACAAATCAGGAGAGCAATCAGGGCCTCCGGGTAAAACACGCAACCG
AGAGTGTTAGTGGTGCTAGAAATAGTAGTGGGGATGATAGCAGCAGCAAA
TTTGGTGATGGGTATGGTGGCAGCAGCAGGGTTAGCGAAGAAGGCATTTC
TCTCGGTGGTCGTGGTGGTAGCTTTAGCAACAGTCGTGACGAGGCGCCAC
CTCTCGCGGCCGGTGGTTCTCAACAAGAACCCCAGAGAGACGGGAACGCG
GCGGCGGTGCCGGGGGAGCGGCCGCAGGACCGGGAGAACGGGAGAGGAGG
GTCGAAGAGTGGTGCCCCCGCTGCGACCGCCGCCCCCGCTGCGACCGCCG
CCCCCGCTGCGACCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCCACCAA
GCGGCAGGAGTCGTGGCGGTGTCGGACTTGATCTTTGCCACGGACTGGCC
TCCTCCGGGCAGCACGGCCATGGCCGAGGAACCGGTGAGTTACAGCGGGC
GCTGCTCCTGGGGTGCCGACGTCGTTGCGTCCATGGGTCCGCCCAAAGAC
GCCCTGGACGTGGCTATCCGGCTCTTTCTGCTGGGGCTGGCGCTGCCCCG
GGCACAGGCGGAGCGGCGCCTCGGCCGCGGCTTTCTCGAGTCTGCGGACA
GGCTCGGCATGATCGGGGAGTGTCCGGTCGACCCGCTGCTGCTGGTGTCG
CTGGTTCAACTGTTCCCACTCGACGCGGAAGCGTTGTCGCCGCCGCTGCC
GCTGCCAGATGGCGATACAAATCAGGAGAGCAATCAGGGCCTCCGGGTAA
AACACGCAACCGAGAGTGTTAGTGGTGCTAGAAATAGTAGTGGGGATGAT
AGCAGCAGCAAATTTGGTGATGGGTATGGTGGCAGCAGCAGGGTTAGCGA
AGAAGGCATTTCTCTCGGTGGTCGTGGTGGTAGCTTTAGCAACAGTCGTG
ACGAGGCGCCACCTCTCGCGGCCGGTGGTTCTCAACAAGAACCCCAGAGA
GACGGGAACGCGGCGGCGGTGCCGGGGGAGCGGCCGCAGGACCGGGAGAA
CGGGAGAGGAGGGTCGAAGAGTGGTGCCCCCGCTGCGACCGCCGCCCCCG
CTGCGACCGCCGCCCCCGCTGCGACCGCCGCCGCCGCCGCCGCCGCCGCC
GCCTCCCACCAAGCGGCAGGAGTCGTGGCGGTGTCGGACTTGATCTTTGC
CACGGACTGGCCTCCTCCGGGCAGCACGGCCATGGCCGAGGAACCGGTGA
GTTACAGCGGGCGCTGCTCCTGGGGT
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