mRNA_L-elsbetiae_contig13815.2887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13815.2887.1
Unique NamemRNA_L-elsbetiae_contig13815.2887.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13815.2887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13815contigL-elsbetiae_contig13815:616..974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.2163491-CDS-L-elsbetiae_contig13815:615..6991622815542.2163491-CDS-L-elsbetiae_contig13815:615..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13815 616..699 +
1691682949.5218737-CDS-L-elsbetiae_contig13815:615..6991691682949.5218737-CDS-L-elsbetiae_contig13815:615..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13815 616..699 +
1622815542.2344859-CDS-L-elsbetiae_contig13815:890..9741622815542.2344859-CDS-L-elsbetiae_contig13815:890..974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13815 891..974 +
1691682949.5319564-CDS-L-elsbetiae_contig13815:890..9741691682949.5319564-CDS-L-elsbetiae_contig13815:890..974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13815 891..974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13815.2887.1prot_L-elsbetiae_contig13815.2887.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13815 616..974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13815.2887.1

>prot_L-elsbetiae_contig13815.2887.1 ID=prot_L-elsbetiae_contig13815.2887.1|Name=mRNA_L-elsbetiae_contig13815.2887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
PRRAPVASGLFLLWIGGDQQESLFSVNVILEKHATRYSRTLHVCPFCLCG
WVRAIG
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mRNA from alignment at L-elsbetiae_contig13815:616..974+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13815.2887.1 ID=mRNA_L-elsbetiae_contig13815.2887.1|Name=mRNA_L-elsbetiae_contig13815.2887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=359bp|location=Sequence derived from alignment at L-elsbetiae_contig13815:616..974+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGGAGAGCGCCTGTAGCCTCTGGTCTGTTCTTGTTGTGGATTGGAGG
AGACCAGCAAGAGTCCTTATTTTCAGTGAACGTTGTGCGTCGTTGAAGAG
CACAGAAATACAAGATCCAGCGCCACGGTTCTCGATCGTGCATTTGCCTG
GGTTTGACGATCTGTTTTTGATGCTTTTTCAGCTTCCGATGAGAGTGAGA
CAGATGCACCGTTGATAAGTTTGTAAGTGAGGCTGATTTCCCGACTTTCT
TGCCCTCTTCCCGCCCTTTCCGCAGATTTTGGAGAAGCACGCCACACGCT
ACTCCCGCACTCTCCACGTATGCCCGTTTTGTTTATGCGGCTGGGTTCGT
GCGATTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13815:616..974+

>mRNA_L-elsbetiae_contig13815.2887.1 ID=mRNA_L-elsbetiae_contig13815.2887.1|Name=mRNA_L-elsbetiae_contig13815.2887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig13815:616..974+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGGAGAGCGCCTGTAGCCTCTGGTCTGTTCTTGTTGTGGATTGGAGG
AGACCAGCAAGAGTCCTTATTTTCAGTGAACGTTCCGCGGAGAGCGCCTG
TAGCCTCTGGTCTGTTCTTGTTGTGGATTGGAGGAGACCAGCAAGAGTCC
TTATTTTCAGTGAACGTTATTTTGGAGAAGCACGCCACACGCTACTCCCG
CACTCTCCACGTATGCCCGTTTTGTTTATGCGGCTGGGTTCGTGCGATTG
GAATTTTGGAGAAGCACGCCACACGCTACTCCCGCACTCTCCACGTATGC
CCGTTTTGTTTATGCGGCTGGGTTCGTGCGATTGGA
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