|
Homology
BLAST of mRNA_L-elsbetiae_contig13814.2886.1 vs. uniprot
Match: A0A6H5L5K6_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K6_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 8.620e-7 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 52 SNPWDVFGSDSDEEPSAXXXXXXXXXXXXXXXXXXXHLSAAKKKQRRYAWEALLPTFRFPAGFD 243
++PWDVFGSDSDE+ A XXXXXXXXXXX L A++K+ YAWE+LLP F+FP GFD
Sbjct: 2 ADPWDVFGSDSDEDQPAAIXXXXXXXXXXXPAAVS--LPTARRKKILYAWESLLPRFQFPPGFD 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 243 |
Cds size | 243 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815542.1463861-CDS-L-elsbetiae_contig13814:1371..1479 | 1622815542.1463861-CDS-L-elsbetiae_contig13814:1371..1479 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13814 1372..1479 + |
1691682949.5043507-CDS-L-elsbetiae_contig13814:1371..1479 | 1691682949.5043507-CDS-L-elsbetiae_contig13814:1371..1479 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13814 1372..1479 + |
1622815542.1621525-CDS-L-elsbetiae_contig13814:2909..3044 | 1622815542.1621525-CDS-L-elsbetiae_contig13814:2909..3044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13814 2910..3044 + |
1691682949.513604-CDS-L-elsbetiae_contig13814:2909..3044 | 1691682949.513604-CDS-L-elsbetiae_contig13814:2909..3044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13814 2910..3044 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13814.2886.1 >prot_L-elsbetiae_contig13814.2886.1 ID=prot_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
RSPLRRQDVRETRKSMASNPWDVFGSDSDEEPSAATPTPTLAAAAAAAAA AAAHLSAAKKKQRRYAWEALLPTFRFPAGFD back to topmRNA from alignment at L-elsbetiae_contig13814:1372..3044+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig13814.2886.1 ID=mRNA_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1673bp|location=Sequence derived from alignment at L-elsbetiae_contig13814:1372..3044+ (Laminarionema elsbetiae ELsaHSoW15) CGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAATCGATGGC
ATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGAACCGTCGG
CAGCAACGGTGAGCGAAGTGCTGAGAGCAGCTGAAAGAGAGACAACACAA
AGGCATGTTGTGCCGCCGACTCTCACAGTCCCGTGTTATACTTGGAATAT
GAGGGCGAGTCCTTTTCCAGGTGGTCTCGCTAGAAATACGACGCCAGCAC
GGCTGTGTGTGTGTATGAGCGGAGACACGAGCTGGGATAACCTTTGCGGT
GAATAATTGCATGCAATCAAAGCATCCATGCGCTTCAGCGTGCCATTCGA
TCGGTGGGAGTTTTGCAGCAATCGTGCTGGCTGCAACATGTCTCCTCTGA
TGTGCAACAGCTCTCCCAGAGTCACGACGGTTTTATATCCCAAGAGTCAA
CCCTCAAGCGCAGCAACAGCCAGCAAGGGCGAGCAATCTTGTGTATAACA
AACAAGCCGGCCTCGCTATGCATATATCGAAAGTTTACGCACGTGGAGCC
TGTGGGCGTTCAATAAAGGGCGCAACCTTTCCTCCACCTCAAGTTTTGTC
GAAGACTAGATCCAGACTCGGCGTTTACGATACACTTTGGGTTGCTGGCT
CCTTTTGCCAAAATGTCAATTTCCAACTAAGGGCGCGTCGTAACGATAAA
AATGACAGCCAATTCGAAAAGCGATTTGGAATCGAATTTGCCTGTGATTG
GTCATCAAACCCAAAACCCATCCCATGGATCTTGGCGGGTGGTAGCATTT
CTATCCCACGAAGCTAGCTAGCATTGGCGCACCGAAAATAACCCTCCGGA
GGGTTGATTTTTGGCAGTCGCTCGAACGAATTTGATTGACCCACGAACCG
TACATGCAGGCCCCCGTGCTGGCGCGTTTTCCTGTTTCCACGCTACCACA
CCAATCGCTTGGTACCAGCGGTTTGGGGGATAGCTGTATTGTGACAGGCC
TGTGCGCGTGTAAGAAAAGCAGGCGCCCTGTTTCGTGCACGGCTGCTGTT
TTCGAAAAAATGATGCCCACGCGGTGGTGTCGTTGCATCTCGGCAACCCA
AACATCAGTTCTAGTAGCTGACGTTTGAAGATGAGGTTTGGACCAAAAGG
ACCTCGTGTTCAGACTTAAACCTTGTGACTTCTTGTGATATTCTTCTAGC
TATTTACCCTGTGGCACATGAGCTGCCGGTGAACTTTCAGTCAACCTGTC
TAGCAGGCGGCCCCCAGGGGATATCCGTGGTAATCGATTTGGCTCCTTGC
GCGGGGGCGCTGATTGTCCAGATTCGAGCCCCAATTCCAATTCCAATTCG
CTTTCCAAATTTGCTGCCATTTTTATCGTCAAGACGCGCCCCATAAGATG
TACGCTCCCATACACCAGAAGCGGGAAGAGTGCCTCAATCTCTCTTTGGC
CTCGATGATGAAGCCACCGTTTCCACGCTCTTCGGTCGCTCAAAACTCTG
TACTCGCCGTCTGTTGTGACCACGTCCGATTGCCGCAGCCCACGCCAACA
CTTGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCACACCTGTCGGC
TGCCAAGAAAAAGCAGCGGCGATACGCCTGGGAGGCCCTGCTGCCGACGT
TCCGATTCCCGGCCGGGTTTGAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig13814:1372..3044+ >mRNA_L-elsbetiae_contig13814.2886.1 ID=mRNA_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig13814:1372..3044+ (Laminarionema elsbetiae ELsaHSoW15) CGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAATCGATGGC ATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGAACCGTCGG CAGCAACGCGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAA TCGATGGCATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGA ACCGTCGGCAGCAACGCCCACGCCAACACTTGCAGCGGCGGCGGCGGCAG CGGCAGCGGCGGCGGCACACCTGTCGGCTGCCAAGAAAAAGCAGCGGCGA TACGCCTGGGAGGCCCTGCTGCCGACGTTCCGATTCCCGGCCGGGTTTGA CCCCACGCCAACACTTGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGG CACACCTGTCGGCTGCCAAGAAAAAGCAGCGGCGATACGCCTGGGAGGCC CTGCTGCCGACGTTCCGATTCCCGGCCGGGTTTGAC back to top
|