mRNA_L-elsbetiae_contig13814.2886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13814.2886.1
Unique NamemRNA_L-elsbetiae_contig13814.2886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13814.2886.1 vs. uniprot
Match: A0A6H5L5K6_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.620e-7
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   52 SNPWDVFGSDSDEEPSAXXXXXXXXXXXXXXXXXXXHLSAAKKKQRRYAWEALLPTFRFPAGFD 243
            ++PWDVFGSDSDE+  A  XXXXXXXXXXX       L  A++K+  YAWE+LLP F+FP GFD
Sbjct:    2 ADPWDVFGSDSDEDQPAAIXXXXXXXXXXXPAAVS--LPTARRKKILYAWESLLPRFQFPPGFD 63          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13814.2886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5K6_9PHAE8.620e-760.94SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13814contigL-elsbetiae_contig13814:1372..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.1463861-CDS-L-elsbetiae_contig13814:1371..14791622815542.1463861-CDS-L-elsbetiae_contig13814:1371..1479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13814 1372..1479 +
1691682949.5043507-CDS-L-elsbetiae_contig13814:1371..14791691682949.5043507-CDS-L-elsbetiae_contig13814:1371..1479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13814 1372..1479 +
1622815542.1621525-CDS-L-elsbetiae_contig13814:2909..30441622815542.1621525-CDS-L-elsbetiae_contig13814:2909..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13814 2910..3044 +
1691682949.513604-CDS-L-elsbetiae_contig13814:2909..30441691682949.513604-CDS-L-elsbetiae_contig13814:2909..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13814 2910..3044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13814.2886.1prot_L-elsbetiae_contig13814.2886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13814 1372..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13814.2886.1

>prot_L-elsbetiae_contig13814.2886.1 ID=prot_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
RSPLRRQDVRETRKSMASNPWDVFGSDSDEEPSAATPTPTLAAAAAAAAA
AAAHLSAAKKKQRRYAWEALLPTFRFPAGFD
back to top

mRNA from alignment at L-elsbetiae_contig13814:1372..3044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13814.2886.1 ID=mRNA_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1673bp|location=Sequence derived from alignment at L-elsbetiae_contig13814:1372..3044+ (Laminarionema elsbetiae ELsaHSoW15)
CGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAATCGATGGC ATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGAACCGTCGG CAGCAACGGTGAGCGAAGTGCTGAGAGCAGCTGAAAGAGAGACAACACAA AGGCATGTTGTGCCGCCGACTCTCACAGTCCCGTGTTATACTTGGAATAT GAGGGCGAGTCCTTTTCCAGGTGGTCTCGCTAGAAATACGACGCCAGCAC GGCTGTGTGTGTGTATGAGCGGAGACACGAGCTGGGATAACCTTTGCGGT GAATAATTGCATGCAATCAAAGCATCCATGCGCTTCAGCGTGCCATTCGA TCGGTGGGAGTTTTGCAGCAATCGTGCTGGCTGCAACATGTCTCCTCTGA TGTGCAACAGCTCTCCCAGAGTCACGACGGTTTTATATCCCAAGAGTCAA CCCTCAAGCGCAGCAACAGCCAGCAAGGGCGAGCAATCTTGTGTATAACA AACAAGCCGGCCTCGCTATGCATATATCGAAAGTTTACGCACGTGGAGCC TGTGGGCGTTCAATAAAGGGCGCAACCTTTCCTCCACCTCAAGTTTTGTC GAAGACTAGATCCAGACTCGGCGTTTACGATACACTTTGGGTTGCTGGCT CCTTTTGCCAAAATGTCAATTTCCAACTAAGGGCGCGTCGTAACGATAAA AATGACAGCCAATTCGAAAAGCGATTTGGAATCGAATTTGCCTGTGATTG GTCATCAAACCCAAAACCCATCCCATGGATCTTGGCGGGTGGTAGCATTT CTATCCCACGAAGCTAGCTAGCATTGGCGCACCGAAAATAACCCTCCGGA GGGTTGATTTTTGGCAGTCGCTCGAACGAATTTGATTGACCCACGAACCG TACATGCAGGCCCCCGTGCTGGCGCGTTTTCCTGTTTCCACGCTACCACA CCAATCGCTTGGTACCAGCGGTTTGGGGGATAGCTGTATTGTGACAGGCC TGTGCGCGTGTAAGAAAAGCAGGCGCCCTGTTTCGTGCACGGCTGCTGTT TTCGAAAAAATGATGCCCACGCGGTGGTGTCGTTGCATCTCGGCAACCCA AACATCAGTTCTAGTAGCTGACGTTTGAAGATGAGGTTTGGACCAAAAGG ACCTCGTGTTCAGACTTAAACCTTGTGACTTCTTGTGATATTCTTCTAGC TATTTACCCTGTGGCACATGAGCTGCCGGTGAACTTTCAGTCAACCTGTC TAGCAGGCGGCCCCCAGGGGATATCCGTGGTAATCGATTTGGCTCCTTGC GCGGGGGCGCTGATTGTCCAGATTCGAGCCCCAATTCCAATTCCAATTCG CTTTCCAAATTTGCTGCCATTTTTATCGTCAAGACGCGCCCCATAAGATG TACGCTCCCATACACCAGAAGCGGGAAGAGTGCCTCAATCTCTCTTTGGC CTCGATGATGAAGCCACCGTTTCCACGCTCTTCGGTCGCTCAAAACTCTG TACTCGCCGTCTGTTGTGACCACGTCCGATTGCCGCAGCCCACGCCAACA CTTGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCACACCTGTCGGC TGCCAAGAAAAAGCAGCGGCGATACGCCTGGGAGGCCCTGCTGCCGACGT TCCGATTCCCGGCCGGGTTTGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13814:1372..3044+

>mRNA_L-elsbetiae_contig13814.2886.1 ID=mRNA_L-elsbetiae_contig13814.2886.1|Name=mRNA_L-elsbetiae_contig13814.2886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig13814:1372..3044+ (Laminarionema elsbetiae ELsaHSoW15)
CGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAATCGATGGC
ATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGAACCGTCGG
CAGCAACGCGTAGCCCACTGCGACGACAAGACGTGAGAGAGACGAGAAAA
TCGATGGCATCAAACCCTTGGGATGTGTTCGGTTCGGACAGCGACGAAGA
ACCGTCGGCAGCAACGCCCACGCCAACACTTGCAGCGGCGGCGGCGGCAG
CGGCAGCGGCGGCGGCACACCTGTCGGCTGCCAAGAAAAAGCAGCGGCGA
TACGCCTGGGAGGCCCTGCTGCCGACGTTCCGATTCCCGGCCGGGTTTGA
CCCCACGCCAACACTTGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGG
CACACCTGTCGGCTGCCAAGAAAAAGCAGCGGCGATACGCCTGGGAGGCC
CTGCTGCCGACGTTCCGATTCCCGGCCGGGTTTGAC
back to top