mRNA_L-elsbetiae_contig13812.2885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13812.2885.1
Unique NamemRNA_L-elsbetiae_contig13812.2885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.900e-35
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            + L  RGGSGIKYYEL D GG +       PSA FCHEYKA GDPLSGLA+LPPQ LD+A VEVARLLRLT+ SVEPVSLMLPRS D+K +FQD IY
Sbjct:  765 LLLAGRGGSGIKYYELSDSGGTSA------PSAQFCHEYKAEGDPLSGLALLPPQCLDVASVEVARLLRLTSTSVEPVSLMLPRSADMKGFFQDGIY 855
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: A0A024U282_9STRA (Coronin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U282_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.960e-13
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGT-APFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L+ RG   +  YE+     DA  GT AP      C  +   G P++G A+LP QS ++  VEVA+ L LT A++EPV+L +PR+  LK +FQDDIY
Sbjct:  469 IYLVSRGDRTVMTYEI-----DAAAGTVAP------CAPFAFTGAPIAGAALLPKQSCNVRDVEVAKFLLLTKATIEPVTLSVPRADKLKPFFQDDIY 555
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: A0A024U0Q1_9STRA (Coronin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0Q1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.060e-13
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGT-APFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L+ RG   +  YE+     DA  GT AP      C  +   G P++G A+LP QS ++  VEVA+ L LT A++EPV+L +PR+  LK +FQDDIY
Sbjct:  730 IYLVSRGDRTVMTYEI-----DAAAGTVAP------CAPFAFTGAPIAGAALLPKQSCNVRDVEVAKFLLLTKATIEPVTLSVPRADKLKPFFQDDIY 816
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: COROA_DICDI (Coronin-A n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=COROA_DICDI)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-9
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L  +G   I+YYEL D            P  HF  E+K+   P  GL  LP + L+ +  E+AR L++T  +VEP+S  +PR  D+   FQDDIY
Sbjct:  276 LYLAGKGDGNIRYYELVD----------ESPYIHFLSEFKSA-TPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKSDI---FQDDIY 358
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: UPI000644F445 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F445)

HSP 1 Score: 61.2 bits (147), Expect = 7.490e-9
Identity = 30/97 (30.93%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L  +G   I+YYE+           +  P  H+  E+K    P  G+  +P ++ +++  E+AR L++T ++VEP+S  +PR  D+   FQDD+Y
Sbjct:  278 LYLAGKGDGNIRYYEM----------VSEAPYFHYLSEFKTAS-PQRGICFIPKRACNVSECEIARALKVTPSTVEPISFRVPRKSDI---FQDDLY 360
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: F0ZVC2_DICPU (Coronin n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZVC2_DICPU)

HSP 1 Score: 60.8 bits (146), Expect = 1.030e-8
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            +++  +G   I+YYE+ D            P  HF  E+K    P  GL  +P ++L I   E+AR L++T  SVEP++  +PR  D+   FQDDI+
Sbjct:  289 LYMAGKGDGNIRYYEVVD----------ESPYLHFLSEFKTA-TPQRGLCFVPKRALQINECEIARALKVTTNSVEPIAFKVPRKSDI---FQDDIF 371
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: A0A7S0Z3W0_9CRYP (Coronin (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Z3W0_9CRYP)

HSP 1 Score: 59.3 bits (142), Expect = 3.440e-8
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L  +G + I+Y+E+ D         AP+         K   DP  G+ + P ++ D +  E+A+ +RLTA S+EPVS  +PR GD   +FQDD+Y
Sbjct:  257 LYLAGKGDTNIRYFEIED--------EAPYQYYVAMFSGK---DPQRGICMQPKRACDTSNCEIAKFVRLTANSLEPVSFTVPRKGD---HFQDDLY 339
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BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: A0A151Z5C0_9MYCE (Coronin n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5C0_9MYCE)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-7
Identity = 32/97 (32.99%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            ++L  +G   I+YYE+ +        ++   + ++  E+K+   P  G+  LP ++ +IA  E+AR L+LT  S+EP+S  +PR  D+   FQDDI+
Sbjct:  281 LYLAGKGDGNIRYYEIEE--------SSTSVNYYYLSEFKSA-TPQRGICFLPKRACNIAECEIARGLKLTTNSMEPISFRVPRKSDV---FQDDIF 365
[Close]
BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: D3B210_POLPP (Coronin n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B210_POLPP)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-7
Identity = 28/97 (28.87%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            +++  +G   I+YYE+              P  ++  E+K+   P  G+  +P ++++++  E+AR L++T  +VEP+S  +PR  D+   FQDD+Y
Sbjct:  277 LYMAGKGDGNIRYYEM----------VNEAPYHYYLSEFKSA-TPQRGICFIPKRAVNVSECEIARALKVTPTTVEPISFRVPRKSDI---FQDDLY 359
[Close]
BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Match: F0Y931_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y931_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 3.050e-7
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    1 MFLLCRGGSGIKYYELGDGGGDAGNGTAP--FPSAHFCHEYKAVGDPLSGLAVLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY 291
            +++  RG +  K+YE+     DA   TA   F +          G P  G+  LP  + D+  +EV + LRLT  +VE V   +PR+ +LK+YF DD++
Sbjct:  242 LWVWGRGDTSAKHYEV-----DAAAATAADAFDAGQDWRTASGAG-PHCGVCALPKSACDVMALEVIKFLRLTTTTVETVGFSVPRTAELKEYFNDDLF 334
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13812.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL3_ECTSI4.900e-3571.13Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
A0A024U282_9STRA4.960e-1342.86Coronin n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
A0A024U0Q1_9STRA5.060e-1342.86Coronin n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
COROA_DICDI1.570e-938.14Coronin-A n=1 Tax=Dictyostelium discoideum TaxID=4... [more]
UPI000644F4457.490e-930.93hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZVC2_DICPU1.030e-835.05Coronin n=1 Tax=Dictyostelium purpureum TaxID=5786... [more]
A0A7S0Z3W0_9CRYP3.440e-835.05Coronin (Fragment) n=2 Tax=Hemiselmis TaxID=77924 ... [more]
A0A151Z5C0_9MYCE1.240e-732.99Coronin n=1 Tax=Tieghemostelium lacteum TaxID=3610... [more]
D3B210_POLPP1.690e-728.87Coronin n=1 Tax=Polysphondylium pallidum (strain A... [more]
F0Y931_AURAN3.050e-733.33Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13812contigL-elsbetiae_contig13812:4265..4555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D7FJL3
KEGG koko:K13886,ko:K18619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.1022825-CDS-L-elsbetiae_contig13812:4264..45551622815542.1022825-CDS-L-elsbetiae_contig13812:4264..4555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13812 4265..4555 -
1691682949.4889474-CDS-L-elsbetiae_contig13812:4264..45551691682949.4889474-CDS-L-elsbetiae_contig13812:4264..4555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13812 4265..4555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13812.2885.1prot_L-elsbetiae_contig13812.2885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13812 4265..4555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13812.2885.1

>prot_L-elsbetiae_contig13812.2885.1 ID=prot_L-elsbetiae_contig13812.2885.1|Name=mRNA_L-elsbetiae_contig13812.2885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MFLLCRGGSGIKYYELGDGGGDAGNGTAPFPSAHFCHEYKAVGDPLSGLA
VLPPQSLDIARVEVARLLRLTAASVEPVSLMLPRSGDLKDYFQDDIY
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mRNA from alignment at L-elsbetiae_contig13812:4265..4555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13812.2885.1 ID=mRNA_L-elsbetiae_contig13812.2885.1|Name=mRNA_L-elsbetiae_contig13812.2885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig13812:4265..4555- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTGTTGTGCAGGGGAGGCAGCGGGATCAAGTACTACGAGCTAGG
CGACGGCGGCGGCGACGCTGGCAACGGCACCGCCCCCTTCCCGTCCGCGC
ACTTCTGTCACGAGTACAAGGCCGTGGGGGACCCCCTCAGCGGCCTGGCG
GTCCTTCCGCCGCAGTCCCTGGACATCGCCAGGGTGGAGGTCGCGCGGCT
GCTGAGGCTCACCGCCGCCTCCGTGGAGCCCGTGTCGCTGATGCTGCCGA
GGTCGGGGGACCTGAAGGACTACTTCCAGGACGATATTTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13812:4265..4555-

>mRNA_L-elsbetiae_contig13812.2885.1 ID=mRNA_L-elsbetiae_contig13812.2885.1|Name=mRNA_L-elsbetiae_contig13812.2885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig13812:4265..4555- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTGTTGTGCAGGGGAGGCAGCGGGATCAAGTACTACGAGCTAGG
CGACGGCGGCGGCGACGCTGGCAACGGCACCGCCCCCTTCCCGTCCGCGC
ACTTCTGTCACGAGTACAAGGCCGTGGGGGACCCCCTCAGCGGCCTGGCG
GTCCTTCCGCCGCAGTCCCTGGACATCGCCAGGGTGGAGGTCGCGCGGCT
GCTGAGGCTCACCGCCGCCTCCGTGGAGCCCGTGTCGCTGATGCTGCCGA
GGTCGGGGGACCTGAAGGACTACTTCCAGGACGATATTTACATGTTTTTG
TTGTGCAGGGGAGGCAGCGGGATCAAGTACTACGAGCTAGGCGACGGCGG
CGGCGACGCTGGCAACGGCACCGCCCCCTTCCCGTCCGCGCACTTCTGTC
ACGAGTACAAGGCCGTGGGGGACCCCCTCAGCGGCCTGGCGGTCCTTCCG
CCGCAGTCCCTGGACATCGCCAGGGTGGAGGTCGCGCGGCTGCTGAGGCT
CACCGCCGCCTCCGTGGAGCCCGTGTCGCTGATGCTGCCGAGGTCGGGGG
ACCTGAAGGACTACTTCCAGGACGATATTTAC
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