mRNA_L-elsbetiae_contig13811.2884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13811.2884.1
Unique NamemRNA_L-elsbetiae_contig13811.2884.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13811.2884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13811contigL-elsbetiae_contig13811:2090..2664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size377
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13811.2884.1prot_L-elsbetiae_contig13811.2884.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13811 2090..2542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9688263-CDS-L-elsbetiae_contig13811:2089..22381622815541.9688263-CDS-L-elsbetiae_contig13811:2089..2238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 2090..2238 -
1691682949.4044924-CDS-L-elsbetiae_contig13811:2089..22381691682949.4044924-CDS-L-elsbetiae_contig13811:2089..2238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 2090..2238 -
1622815541.9809475-CDS-L-elsbetiae_contig13811:2436..25421622815541.9809475-CDS-L-elsbetiae_contig13811:2436..2542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 2437..2542 -
1691682949.4189265-CDS-L-elsbetiae_contig13811:2436..25421691682949.4189265-CDS-L-elsbetiae_contig13811:2436..2542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 2437..2542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9986696-UTR-L-elsbetiae_contig13811:2542..26641622815541.9986696-UTR-L-elsbetiae_contig13811:2542..2664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13811 2543..2664 -
1691682949.436827-UTR-L-elsbetiae_contig13811:2542..26641691682949.436827-UTR-L-elsbetiae_contig13811:2542..2664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13811 2543..2664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13811.2884.1

>prot_L-elsbetiae_contig13811.2884.1 ID=prot_L-elsbetiae_contig13811.2884.1|Name=mRNA_L-elsbetiae_contig13811.2884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MCVTPFVLNTRGTTAASEHRAENYTLFFLVCWLCSDRTRRLRWGRSTPRT
VARLSPRHQARLNTTTSPSVSINSLAKISRCPRSC
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mRNA from alignment at L-elsbetiae_contig13811:2090..2664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13811.2884.1 ID=mRNA_L-elsbetiae_contig13811.2884.1|Name=mRNA_L-elsbetiae_contig13811.2884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=575bp|location=Sequence derived from alignment at L-elsbetiae_contig13811:2090..2664- (Laminarionema elsbetiae ELsaHSoW15)
CGTCGACATCTCTCCTCTAGTGAGAGGGGTACTGGGCAAGGCATGTGCTG
TGCGTTGTCCCCGTGCCTCTCTCTTTTCACCCCCACCGCCCGGCAACGCC
GCTCCGGTCTCCGCCGACAGAGATGTGTGTAACGCCATTTGTTCTCAACA
CACGCGGAACTACAGCCGCGTCGGAGCATCGCGCTGAGAACTATACGCTC
TTCTTCCTGGTGTGCTGGCTGTGCTCAGGTACGCTCTACTTTTTTTTGGG
GGGGGGGAGGTAAAACTAGCCGTTGCTCTGTGTGGCAGATTACAGATACT
CCGAACAAACTAGATCCGCCACCCGCTGGATCTGCTGGCAACTTGCTCGG
CAATCAAGCTTGCTCGGTAATCACACTTCCAAGCCAGATGTTACAACCTC
TTCGGCCCCTCAAAATTTCGGCGCAGATCGGACGCGGAGACTGCGGTGGG
GACGCTCGACACCCCGCACCGTCGCCCGCCTCTCTCCACGCCATCAGGCA
CGCCTCAACACAACCACGTCTCCCTCCGTCTCCATAAACAGCCTTGCAAA
GATCTCGCGATGTCCGCGGTCCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13811:2090..2664-

>mRNA_L-elsbetiae_contig13811.2884.1 ID=mRNA_L-elsbetiae_contig13811.2884.1|Name=mRNA_L-elsbetiae_contig13811.2884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig13811:2090..2664- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTAACGCCATTTGTTCTCAACACACGCGGAACTACAGCCGCGTC
GGAGCATCGCGCTGAGAACTATACGCTCTTCTTCCTGGTGTGCTGGCTGT
GCTCAGATGTGTGTAACGCCATTTGTTCTCAACACACGCGGAACTACAGC
CGCGTCGGAGCATCGCGCTGAGAACTATACGCTCTTCTTCCTGGTGTGCT
GGCTGTGCTCAGATCGGACGCGGAGACTGCGGTGGGGACGCTCGACACCC
CGCACCGTCGCCCGCCTCTCTCCACGCCATCAGGCACGCCTCAACACAAC
CACGTCTCCCTCCGTCTCCATAAACAGCCTTGCAAAGATCTCGCGATGTC
CGCGGTCCTGCATCGGACGCGGAGACTGCGGTGGGGACGCTCGACACCCC
GCACCGTCGCCCGCCTCTCTCCACGCCATCAGGCACGCCTCAACACAACC
ACGTCTCCCTCCGTCTCCATAAACAGCCTTGCAAAGATCTCGCGATGTCC
GCGGTCCTGC
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