mRNA_L-elsbetiae_contig13811.2883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13811.2883.1
Unique NamemRNA_L-elsbetiae_contig13811.2883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13811.2883.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.270e-15
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:  325 TASARRNLSSLSLALAVDRPILLHGAAGAGKSTLAREAARLISA---GSDEDTEASSPALLEVHLDDQTD 525
            TASARRNLSSLSLAL VDRPILL+G AG+GKS LAREAARLIS    G D +  ASS  LLE+HLDDQTD
Sbjct:  405 TASARRNLSSLSLALTVDRPILLYGPAGSGKSLLAREAARLISNSGDGVDPEPGASSTPLLELHLDDQTD 474
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BLAST of mRNA_L-elsbetiae_contig13811.2883.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.820e-11
Identity = 56/118 (47.46%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  325 TASARRNLSSLSLALAVDRPILLHGAAGAGKSTLAREAARLISA---------------------------------------------------GSDEDTEASSPALLEVHLDDQTD 525
            TASARRNLSSLSLAL VDRPILLHG AG+GKS LAREAARLIS                                                    G D D  ASS ALLE+HLDDQTD
Sbjct:  404 TASARRNLSSLSLALTVDRPILLHGPAGSGKSLLAREAARLISNSGAGMTVRPQLKVQPVILNQPRQSIQNDIHVLTNLAASPHAALNPIPCEADGVDPDPGASSTALLELHLDDQTD 521
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BLAST of mRNA_L-elsbetiae_contig13811.2883.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-5
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  355 LSLALAVDRPILLHGAAGAGKSTLAREAARLISAGSDEDTEASSPA-LLEVHLDDQTD 525
            LSLAL    P+LLHGAAGAGKS L REAARL   G         PA LLE+HLDDQTD
Sbjct:    4 LSLALLQPGPVLLHGAAGAGKSALLREAARLSCRG---------PAPLLELHLDDQTD 52
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BLAST of mRNA_L-elsbetiae_contig13811.2883.1 vs. uniprot
Match: A0A5D6XYG6_9STRA (VWFA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.430e-5
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:  313 PAASTASARRNLSSLSLALAVDRPILLHGAAGAGKSTLAREAARLISAGSDEDTEASSPALLEVHLDDQTD 525
            P  +TAS +RNL SL++AL + RPIL+ GA G GK+ + RE ARL  +G+D+        ++E+HLDDQ D
Sbjct:  325 PLVATASTKRNLQSLAIALGLKRPILVAGAGGCGKTAMIRELARL--SGNDD--------MVELHLDDQID 385
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13811.2883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL29_ECTSI2.270e-1575.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE5.820e-1147.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z947_9STRA1.270e-563.79P-loop containing nucleoside triphosphate hydrolas... [more]
A0A5D6XYG6_9STRA2.430e-547.89VWFA domain-containing protein n=1 Tax=Pythium bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13811contigL-elsbetiae_contig13811:992..1738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.5e-15
Seed eggNOG ortholog2880.D7FL29
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size525
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13811.2883.1prot_L-elsbetiae_contig13811.2883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13811 992..1495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.0398686-CDS-L-elsbetiae_contig13811:991..10591622815542.0398686-CDS-L-elsbetiae_contig13811:991..1059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 992..1059 -
1691682949.449471-CDS-L-elsbetiae_contig13811:991..10591691682949.449471-CDS-L-elsbetiae_contig13811:991..1059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 992..1059 -
1622815542.0525851-CDS-L-elsbetiae_contig13811:1281..14951622815542.0525851-CDS-L-elsbetiae_contig13811:1281..1495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 1282..1495 -
1691682949.4622962-CDS-L-elsbetiae_contig13811:1281..14951691682949.4622962-CDS-L-elsbetiae_contig13811:1281..1495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13811 1282..1495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.0659633-UTR-L-elsbetiae_contig13811:1495..17381622815542.0659633-UTR-L-elsbetiae_contig13811:1495..1738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13811 1496..1738 -
1691682949.4750283-UTR-L-elsbetiae_contig13811:1495..17381691682949.4750283-UTR-L-elsbetiae_contig13811:1495..1738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13811 1496..1738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13811.2883.1

>prot_L-elsbetiae_contig13811.2883.1 ID=prot_L-elsbetiae_contig13811.2883.1|Name=mRNA_L-elsbetiae_contig13811.2883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MVETASSAAVDSSRSDDNLTRSVPAASTASARRNLSSLSLALAVDRPILL
HGAAGAGKSTLAREAARLISAGSDEDTEASSPALLEVHLDDQTD
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mRNA from alignment at L-elsbetiae_contig13811:992..1738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13811.2883.1 ID=mRNA_L-elsbetiae_contig13811.2883.1|Name=mRNA_L-elsbetiae_contig13811.2883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig13811:992..1738- (Laminarionema elsbetiae ELsaHSoW15)
GGGTAAAGCAACATCGTCGAGGCTGTTCACAAGCTGCTCTCCTGCGCCGC
TGTCGGCCCCAGCATTGCCAGCCTGTGGGTCTAGTCGCCCTTCTTCAGCC
TCTGCCACCATCCAGGCGCCCTGGTTCGCTAGCGTGCGGTTAGGGTGTGC
GCATCCCTCCTGACCCTCGATGAGCAAGGCCGAAGAAAACTGTTGACGGC
GGCTGGGGGACTCGATCTGGGTGCGCAAGAACAATCGGCCGCGATGGTGG
AAACAGCATCATCAGCAGCAGTCGACAGCAGCAGGAGCGACGACAACCTC
ACAAGATCGGTTCCTGCCGCTTCTACTGCCTCCGCTCGGCGCAACCTTTC
TTCGCTCTCCCTCGCCTTGGCTGTGGACAGACCAATACTCCTGCACGGCG
CTGCCGGCGCCGGAAAGAGCACTCTCGCGCGCGAAGCCGCCCGCCTCATC
TCCGCAGGTAAGCTTTTGTCGGTCAATACAGTTGTGTTTTGAGTCGTGTT
CCGCCGCCTCGGCCGTTTTTGGTTGCCTCTCGCGTTACTGCTGTTGCACT
TGTATGTAGACACGCACCCCATTCAACCCAACAACAGGCAGCATCGACTG
CATCCAGAGCTCCCCTCTCACACACTTTTTTCTCTCTCGCTATCTTTTCC
CCCCTATCCCCCAATTGTAAATAAATCAGGCAGCGACGAGGACACGGAAG
CATCATCCCCTGCTCTCCTAGAAGTCCACCTCGACGACCAGACCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13811:992..1738-

>mRNA_L-elsbetiae_contig13811.2883.1 ID=mRNA_L-elsbetiae_contig13811.2883.1|Name=mRNA_L-elsbetiae_contig13811.2883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig13811:992..1738- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAAACAGCATCATCAGCAGCAGTCGACAGCAGCAGGAGCGACGA
CAACCTCACAAGATCGGTTCCTGCCGCTTCTACTGCCTCCGCTCGGCGCA
ACCTTTCTTCGCTCTCCCTCGCCTTGGCTGTGGACAGACCAATACTCCTG
CACGGCGCTGCCGGCGCCGGAAAGAGCACTCTCGCGCGCGAAGCCGCCCG
CCTCATCTCCGCAGATGGTGGAAACAGCATCATCAGCAGCAGTCGACAGC
AGCAGGAGCGACGACAACCTCACAAGATCGGTTCCTGCCGCTTCTACTGC
CTCCGCTCGGCGCAACCTTTCTTCGCTCTCCCTCGCCTTGGCTGTGGACA
GACCAATACTCCTGCACGGCGCTGCCGGCGCCGGAAAGAGCACTCTCGCG
CGCGAAGCCGCCCGCCTCATCTCCGCAGGCAGCGACGAGGACACGGAAGC
ATCATCCCCTGCTCTCCTAGAAGTCCACCTCGACGACCAGACCGACGCAG
CGACGAGGACACGGAAGCATCATCCCCTGCTCTCCTAGAAGTCCACCTCG
ACGACCAGACCGAC
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