mRNA_L-elsbetiae_contig1381.2882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1381.2882.1
Unique NamemRNA_L-elsbetiae_contig1381.2882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1381.2882.1 vs. uniprot
Match: D7FKC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.550e-6
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  103 KGVARTSSLLSLFEAQSVEHVTSGGGGGRDNSGPYLDDD 219
            + +ARTSSLLSL+EAQSVEHV    G  RDNSGPYLDDD
Sbjct: 1088 RALARTSSLLSLYEAQSVEHVA---GIRRDNSGPYLDDD 1123
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BLAST of mRNA_L-elsbetiae_contig1381.2882.1 vs. uniprot
Match: A0A6H5L375_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L375_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.760e-5
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  103 KGVARTSSLLSLFEAQSVEHVTSGGGGGRDNSGPYLDDD 219
            + VAR SSLLSL+EAQSVE V    G  RDNSGPYLDDD
Sbjct: 1090 RAVARASSLLSLYEAQSVEQVA---GIRRDNSGPYLDDD 1125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1381.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKC8_ECTSI2.550e-674.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L375_9PHAE5.760e-571.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1381contigL-elsbetiae_contig1381:20091..20393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005720.1
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9290187-CDS-L-elsbetiae_contig1381:20090..203931622815541.9290187-CDS-L-elsbetiae_contig1381:20090..20393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1381 20091..20393 +
1691682949.391469-CDS-L-elsbetiae_contig1381:20090..203931691682949.391469-CDS-L-elsbetiae_contig1381:20090..20393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1381 20091..20393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1381.2882.1prot_L-elsbetiae_contig1381.2882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1381 20091..20393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1381.2882.1

>prot_L-elsbetiae_contig1381.2882.1 ID=prot_L-elsbetiae_contig1381.2882.1|Name=mRNA_L-elsbetiae_contig1381.2882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
GQAAARKTPSEERTAPGQGCSAFEASPAPSPALPKGVARTSSLLSLFEAQ
SVEHVTSGGGGGRDNSGPYLDDDGGTLQGTGGSAWGPPYGWRVTVGRRGD
R
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mRNA from alignment at L-elsbetiae_contig1381:20091..20393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1381.2882.1 ID=mRNA_L-elsbetiae_contig1381.2882.1|Name=mRNA_L-elsbetiae_contig1381.2882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig1381:20091..20393+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAGGCGGCAGCAAGGAAAACACCTTCGGAGGAGAGAACCGCACCCGG
GCAGGGTTGCAGTGCTTTCGAGGCTAGCCCGGCACCGTCGCCCGCGTTGC
CGAAGGGGGTCGCACGAACGAGCAGCCTCCTGTCGCTGTTCGAGGCACAG
TCCGTGGAGCACGTCACGAGCGGCGGAGGCGGCGGCAGGGACAACAGCGG
GCCCTACCTGGACGACGACGGGGGCACTCTGCAGGGCACGGGGGGCTCCG
CCTGGGGACCACCGTACGGCTGGCGGGTGACGGTGGGCAGGCGCGGAGAC
CGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1381:20091..20393+

>mRNA_L-elsbetiae_contig1381.2882.1 ID=mRNA_L-elsbetiae_contig1381.2882.1|Name=mRNA_L-elsbetiae_contig1381.2882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1381:20091..20393+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAGGCGGCAGCAAGGAAAACACCTTCGGAGGAGAGAACCGCACCCGG
GCAGGGTTGCAGTGCTTTCGAGGCTAGCCCGGCACCGTCGCCCGCGTTGC
CGAAGGGGGTCGCACGAACGAGCAGCCTCCTGTCGCTGTTCGAGGCACAG
TCCGTGGAGCACGTCACGAGCGGCGGAGGCGGCGGCAGGGACAACAGCGG
GCCCTACCTGGACGACGACGGGGGCACTCTGCAGGGCACGGGGGGCTCCG
CCTGGGGACCACCGTACGGCTGGCGGGTGACGGTGGGCAGGCGCGGAGAC
CGGGGCCAGGCGGCAGCAAGGAAAACACCTTCGGAGGAGAGAACCGCACC
CGGGCAGGGTTGCAGTGCTTTCGAGGCTAGCCCGGCACCGTCGCCCGCGT
TGCCGAAGGGGGTCGCACGAACGAGCAGCCTCCTGTCGCTGTTCGAGGCA
CAGTCCGTGGAGCACGTCACGAGCGGCGGAGGCGGCGGCAGGGACAACAG
CGGGCCCTACCTGGACGACGACGGGGGCACTCTGCAGGGCACGGGGGGCT
CCGCCTGGGGACCACCGTACGGCTGGCGGGTGACGGTGGGCAGGCGCGGA
GACCGG
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