mRNA_L-elsbetiae_contig13808.2880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13808.2880.1
Unique NamemRNA_L-elsbetiae_contig13808.2880.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13808.2880.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.840e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 KVEEMERRTARREAELERVLSESRQQSKLELSRLRALHADEMGAKDALVHGFRVELDGLLRA 186
            KVEEMERRTARREAEL+RVLSESRQQSKLELSRLRA+HADEM AKDALVHGFR ELDGLLRA
Sbjct:  404 KVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRA 465
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BLAST of mRNA_L-elsbetiae_contig13808.2880.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.480e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 KVEEMERRTARREAELERVLSESRQQSKLELSRLRALHADEMGAKDALVHGFRVELDGLLRA 186
            KVEEMERRTARREAEL+RVLSESRQQSKLELSRLRA+HADEM AKDALVHGFR ELDGLLRA
Sbjct:  636 KVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRA 697
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13808.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRE4_ECTSI1.840e-2493.55Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A6H5KNC7_9PHAE2.480e-2493.55Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13808contigL-elsbetiae_contig13808:4287..4472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.709176-CDS-L-elsbetiae_contig13808:4286..44601622815541.709176-CDS-L-elsbetiae_contig13808:4286..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13808 4287..4460 -
1691682949.272158-CDS-L-elsbetiae_contig13808:4286..44601691682949.272158-CDS-L-elsbetiae_contig13808:4286..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13808 4287..4460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.7246695-UTR-L-elsbetiae_contig13808:4460..44721622815541.7246695-UTR-L-elsbetiae_contig13808:4460..4472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13808 4461..4472 -
1691682949.282702-UTR-L-elsbetiae_contig13808:4460..44721691682949.282702-UTR-L-elsbetiae_contig13808:4460..4472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13808 4461..4472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13808.2880.1prot_L-elsbetiae_contig13808.2880.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13808 4287..4460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13808.2880.1

>prot_L-elsbetiae_contig13808.2880.1 ID=prot_L-elsbetiae_contig13808.2880.1|Name=mRNA_L-elsbetiae_contig13808.2880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
MERRTARREAELERVLSESRQQSKLELSRLRALHADEMGAKDALVHGFRV
ELDGLLRA
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mRNA from alignment at L-elsbetiae_contig13808:4287..4472-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13808.2880.1 ID=mRNA_L-elsbetiae_contig13808.2880.1|Name=mRNA_L-elsbetiae_contig13808.2880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig13808:4287..4472- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGGAAGAGATGGAGCGCCGCACGGCCCGCCGCGAGGCCGAGCTCGA
GCGGGTGCTGTCGGAGAGCCGGCAGCAGTCCAAGCTGGAGCTGTCGAGGC
TGCGGGCCCTCCACGCCGACGAGATGGGTGCCAAGGACGCCCTCGTGCAC
GGCTTCAGGGTGGAGCTCGACGGACTGCTCAGGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13808:4287..4472-

>mRNA_L-elsbetiae_contig13808.2880.1 ID=mRNA_L-elsbetiae_contig13808.2880.1|Name=mRNA_L-elsbetiae_contig13808.2880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig13808:4287..4472- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGCCGCACGGCCCGCCGCGAGGCCGAGCTCGAGCGGGTGCTGTC
GGAGAGCCGGCAGCAGTCCAAGCTGGAGCTGTCGAGGCTGCGGGCCCTCC
ACGCCGACGAGATGGGTGCCAAGGACGCCCTCGTGCACGGCTTCAGGGTG
GAGCTCGACGGACTGCTCAGGGCCATGGAGCGCCGCACGGCCCGCCGCGA
GGCCGAGCTCGAGCGGGTGCTGTCGGAGAGCCGGCAGCAGTCCAAGCTGG
AGCTGTCGAGGCTGCGGGCCCTCCACGCCGACGAGATGGGTGCCAAGGAC
GCCCTCGTGCACGGCTTCAGGGTGGAGCTCGACGGACTGCTCAGGGCC
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