mRNA_L-elsbetiae_contig13805.2879.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13805.2879.1
Unique NamemRNA_L-elsbetiae_contig13805.2879.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13805.2879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13805contigL-elsbetiae_contig13805:3796..4249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001960.1
Exons1
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.6743846-CDS-L-elsbetiae_contig13805:3795..42481622815541.6743846-CDS-L-elsbetiae_contig13805:3795..4248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13805 3796..4248 +
1691682949.2615821-CDS-L-elsbetiae_contig13805:3795..42481691682949.2615821-CDS-L-elsbetiae_contig13805:3795..4248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13805 3796..4248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13805.2879.1prot_L-elsbetiae_contig13805.2879.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13805 3796..4248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13805.2879.1

>prot_L-elsbetiae_contig13805.2879.1 ID=prot_L-elsbetiae_contig13805.2879.1|Name=mRNA_L-elsbetiae_contig13805.2879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
SDYVHGRRLWQEAVVWPGNQHDGEVLHCTREGGHGGCHHQEAVRTPWLSP
CGRRAAWKPARRRSFALNTTSWAWLTSATRGAPTLVSPNGRIMARRTAAD
GGVLHCCTREGGHGGCHHQERCGYPGCHKRPSCGMEQEGSKTVEFCAEHN
K
back to top

mRNA from alignment at L-elsbetiae_contig13805:3796..4249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13805.2879.1 ID=mRNA_L-elsbetiae_contig13805.2879.1|Name=mRNA_L-elsbetiae_contig13805.2879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=454bp|location=Sequence derived from alignment at L-elsbetiae_contig13805:3796..4249+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACTATGTGCACGGACGGCGGTTGTGGCAAGAGGCTGTCGTTTGGCC
TGGAAACCAGCATGACGGTGAAGTTCTGCACTGTACACGCGAAGGAGGGC
ATGGCGGGTGTCATCACCAGGAGGCGGTGCGGACACCCTGGTTGTCACCA
TGCGGCCGTCGTGCGGCATGGAAGCCAGCAAGACGGCGGAGTTTTGCGCT
GAACACAACAAGTTGGGCTTGGCTAACGTCCGCAACAAGAGGTGCACCCA
CTCTAGTTTCGCCAAACGGCCGTATTATGGCGCGAAGGACGGCAGCAGAC
GGCGGAGTTCTGCACTGTTGTACACGCGAAGGAGGGCATGGTGGGTGTCA
TCACCAGGAGCGGTGCGGATACCCTGGTTGCCACAAGCGGCCGTCGTGCG
GTATGGAACAGGAAGGCAGCAAGACGGTGGAGTTTTGCGCTGAGCACAAC
AAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13805:3796..4249+

>mRNA_L-elsbetiae_contig13805.2879.1 ID=mRNA_L-elsbetiae_contig13805.2879.1|Name=mRNA_L-elsbetiae_contig13805.2879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig13805:3796..4249+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACTATGTGCACGGACGGCGGTTGTGGCAAGAGGCTGTCGTTTGGCC
TGGAAACCAGCATGACGGTGAAGTTCTGCACTGTACACGCGAAGGAGGGC
ATGGCGGGTGTCATCACCAGGAGGCGGTGCGGACACCCTGGTTGTCACCA
TGCGGCCGTCGTGCGGCATGGAAGCCAGCAAGACGGCGGAGTTTTGCGCT
GAACACAACAAGTTGGGCTTGGCTAACGTCCGCAACAAGAGGTGCACCCA
CTCTAGTTTCGCCAAACGGCCGTATTATGGCGCGAAGGACGGCAGCAGAC
GGCGGAGTTCTGCACTGTTGTACACGCGAAGGAGGGCATGGTGGGTGTCA
TCACCAGGAGCGGTGCGGATACCCTGGTTGCCACAAGCGGCCGTCGTGCG
GTATGGAACAGGAAGGCAGCAAGACGGTGGAGTTTTGCGCTGAGCACAAC
AAGTCCGACTATGTGCACGGACGGCGGTTGTGGCAAGAGGCTGTCGTTTG
GCCTGGAAACCAGCATGACGGTGAAGTTCTGCACTGTACACGCGAAGGAG
GGCATGGCGGGTGTCATCACCAGGAGGCGGTGCGGACACCCTGGTTGTCA
CCATGCGGCCGTCGTGCGGCATGGAAGCCAGCAAGACGGCGGAGTTTTGC
GCTGAACACAACAAGTTGGGCTTGGCTAACGTCCGCAACAAGAGGTGCAC
CCACTCTAGTTTCGCCAAACGGCCGTATTATGGCGCGAAGGACGGCAGCA
GACGGCGGAGTTCTGCACTGTTGTACACGCGAAGGAGGGCATGGTGGGTG
TCATCACCAGGAGCGGTGCGGATACCCTGGTTGCCACAAGCGGCCGTCGT
GCGGTATGGAACAGGAAGGCAGCAAGACGGTGGAGTTTTGCGCTGAGCAC
AACAAG
back to top