mRNA_L-elsbetiae_contig13803.2877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13803.2877.1
Unique NamemRNA_L-elsbetiae_contig13803.2877.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13803.2877.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.740e-42
Identity = 84/121 (69.42%), Postives = 95/121 (78.51%), Query Frame = -3 
Query:    1 ALRPWIKCLESWSRKGSTATDRGQQGPWTTITQPCAAVLSRASAPSDAPPAPSAGDTGPPIAAHKALTVVLFRAMLLGDEVDGSPHRRPAGAAWIAARAYLLMLSLPGAAAYGVLRPAVLG 363
            AL PWIKCLE+WSRK + A   G++GPWTT+TQPC AVLSRA  PS   P    G   PP+AAHKALTV+LFR MLLG+E +GSPHR P+ AAW AARAYLLMLSLPGAA YGVL+ AVLG
Sbjct:   53 ALGPWIKCLEAWSRK-TNAAQGGEEGPWTTVTQPCTAVLSRAD-PSSETPXXXXGT--PPLAAHKALTVILFRVMLLGEETEGSPHRNPSPAAWAAARAYLLMLSLPGAAPYGVLQSAVLG 169
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BLAST of mRNA_L-elsbetiae_contig13803.2877.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -3 
Query:    1 MLLGDEVDGSPHRRPAGAAWIAARAYLLMLSLPGAAAYGVLRPAVLG 141
            MLLG E +GSPHR P+ AAW AARAYLLMLSLPGAA YGVL+ AVLG
Sbjct:    1 MLLGKETEGSPHRNPSPAAWAAARAYLLMLSLPGAAPYGVLQSAVLG 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13803.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP86_ECTSI2.740e-4269.42Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQJ4_9PHAE1.170e-1278.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13803contigL-elsbetiae_contig13803:3581..3945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.5273693-CDS-L-elsbetiae_contig13803:3580..39401622815541.5273693-CDS-L-elsbetiae_contig13803:3580..3940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 3581..3940 +
1691682949.1746602-CDS-L-elsbetiae_contig13803:3580..39401691682949.1746602-CDS-L-elsbetiae_contig13803:3580..3940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 3581..3940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.5377393-UTR-L-elsbetiae_contig13803:3940..39451622815541.5377393-UTR-L-elsbetiae_contig13803:3940..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13803 3941..3945 +
1691682949.183557-UTR-L-elsbetiae_contig13803:3940..39451691682949.183557-UTR-L-elsbetiae_contig13803:3940..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13803 3941..3945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13803.2877.1prot_L-elsbetiae_contig13803.2877.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13803 3581..3940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13803.2877.1

>prot_L-elsbetiae_contig13803.2877.1 ID=prot_L-elsbetiae_contig13803.2877.1|Name=mRNA_L-elsbetiae_contig13803.2877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
AQHGGPEDPVRGCAGEREHKEVGAGGDPRRPRRPAVRGAVDLVAEEHRPE
QDYGERLVRGDGGPRVSRGWGRRRVGGGAGSREHRSTRLGYRCPRALLPP
VGGGAAFARPRLETFDPRP*
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mRNA from alignment at L-elsbetiae_contig13803:3581..3945+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13803.2877.1 ID=mRNA_L-elsbetiae_contig13803.2877.1|Name=mRNA_L-elsbetiae_contig13803.2877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=365bp|location=Sequence derived from alignment at L-elsbetiae_contig13803:3581..3945+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGCACGGCGGGCCGGAGGACCCCGTACGCGGCTGCGCCGGGGAGCG
AGAGCATAAGGAGGTAGGCGCGGGCGGCGATCCACGCCGCCCCCGCCGGC
CTGCGGTGCGGGGAGCCGTCGACCTCGTCGCCGAGGAGCATCGCCCGGAA
CAGGACTACGGTGAGCGCCTTGTGCGCGGCGATGGGGGGCCCCGTGTCTC
CCGCGGATGGGGCCGGCGGCGCGTCGGAGGGGGCGCTGGCTCTCGAGAGC
ACCGCAGCACACGGCTGGGTTATCGTTGTCCACGGGCCTTGTTGCCCCCG
GTCGGTGGCGGTGCTGCCTTTGCGCGACCACGACTCGAGACATTTGATCC
ACGGCCTTAGCGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13803:3581..3945+

>mRNA_L-elsbetiae_contig13803.2877.1 ID=mRNA_L-elsbetiae_contig13803.2877.1|Name=mRNA_L-elsbetiae_contig13803.2877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig13803:3581..3945+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGCACGGCGGGCCGGAGGACCCCGTACGCGGCTGCGCCGGGGAGCG
AGAGCATAAGGAGGTAGGCGCGGGCGGCGATCCACGCCGCCCCCGCCGGC
CTGCGGTGCGGGGAGCCGTCGACCTCGTCGCCGAGGAGCATCGCCCGGAA
CAGGACTACGGTGAGCGCCTTGTGCGCGGCGATGGGGGGCCCCGTGTCTC
CCGCGGATGGGGCCGGCGGCGCGTCGGAGGGGGCGCTGGCTCTCGAGAGC
ACCGCAGCACACGGCTGGGTTATCGTTGTCCACGGGCCTTGTTGCCCCCG
GTCGGTGGCGGTGCTGCCTTTGCGCGACCACGACTCGAGACATTTGATCC
ACGGCCTTAGGCCCAGCACGGCGGGCCGGAGGACCCCGTACGCGGCTGCG
CCGGGGAGCGAGAGCATAAGGAGGTAGGCGCGGGCGGCGATCCACGCCGC
CCCCGCCGGCCTGCGGTGCGGGGAGCCGTCGACCTCGTCGCCGAGGAGCA
TCGCCCGGAACAGGACTACGGTGAGCGCCTTGTGCGCGGCGATGGGGGGC
CCCGTGTCTCCCGCGGATGGGGCCGGCGGCGCGTCGGAGGGGGCGCTGGC
TCTCGAGAGCACCGCAGCACACGGCTGGGTTATCGTTGTCCACGGGCCTT
GTTGCCCCCGGTCGGTGGCGGTGCTGCCTTTGCGCGACCACGACTCGAGA
CATTTGATCCACGGCCTTAG
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