mRNA_L-elsbetiae_contig13803.2876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13803.2876.1
Unique NamemRNA_L-elsbetiae_contig13803.2876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13803.2876.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.440e-6
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MSTGKADVPPRSRDCVKAHQGAIKVTQAIAAALRGA 108
            M+TGKADVPPRSRDCVKAH  AI   +AIAAALR A
Sbjct:  332 MTTGKADVPPRSRDCVKAHNSAIDTAKAIAAALRNA 367
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BLAST of mRNA_L-elsbetiae_contig13803.2876.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.920e-6
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MSTGKADVPPRSRDCVKAHQGAIKVTQAIAAALRGA 108
            M+TGKADVPPRSRDCVKAH  A+   +AIAAALR A
Sbjct:  210 MNTGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNA 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13803.2876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP86_ECTSI2.440e-677.78Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQJ4_9PHAE2.920e-675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13803contigL-elsbetiae_contig13803:197..2000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.4651864-CDS-L-elsbetiae_contig13803:196..6741622815541.4651864-CDS-L-elsbetiae_contig13803:196..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 197..674 -
1691682949.15314-CDS-L-elsbetiae_contig13803:196..6741691682949.15314-CDS-L-elsbetiae_contig13803:196..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 197..674 -
1622815541.4810045-CDS-L-elsbetiae_contig13803:1968..20001622815541.4810045-CDS-L-elsbetiae_contig13803:1968..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 1969..2000 -
1691682949.1635594-CDS-L-elsbetiae_contig13803:1968..20001691682949.1635594-CDS-L-elsbetiae_contig13803:1968..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13803 1969..2000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13803.2876.1prot_L-elsbetiae_contig13803.2876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13803 197..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13803.2876.1

>prot_L-elsbetiae_contig13803.2876.1 ID=prot_L-elsbetiae_contig13803.2876.1|Name=mRNA_L-elsbetiae_contig13803.2876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MSTGKADVPPRSRDCVKAHQGAIKVTQAIAAALRGANDGAPAEGSTGDKR
ASAPSSPTTTPEQRAAAPPAVDEQETEQRPEAPTPSATTPVGAGGEDAAA
AATATATAAAAAPFAAGDSSGASSAGGSSAGVSDGGGASVVVVGQKKGGE
SGGGGRGARPVLTLMQHLCV
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mRNA from alignment at L-elsbetiae_contig13803:197..2000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13803.2876.1 ID=mRNA_L-elsbetiae_contig13803.2876.1|Name=mRNA_L-elsbetiae_contig13803.2876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1804bp|location=Sequence derived from alignment at L-elsbetiae_contig13803:197..2000- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACCGGCAAGGCAGACGTGCCACCAAGGCAAGTATCTATCTACCG
TAAGTGTGCGAAGGTTGGCACCCCCGTGTTAGCGTTTTTCTATAGCGTAT
TTCTCCACAACCAGGAGGTTACCACTGCCGAAAAGGGTGGTTTTCGAAAC
GTATCGCCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCCTCC
TGGTTGTGGACAAAACAACAACCAGGAGGGTACCACTGCCGAAAAGGGTG
GTTTTCGAAACGTCTCGCCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGC
TCGCACCCTCCTGGTTGTGGAGAAATACGCTTTAGAAAAATGCGAACACG
GGGGTGCGAACCTTCGCACACTTACGGTACTGCTGTATGTAGTTGTTAAT
GGTATTGGTTGTTATTGGGCACTTTTGCACTTTTGGGGGTACGTACCGTA
GGTGACACAAGATACCACACCCCCTGGACCAAATTTTAGACCTTCATTAC
TCCATAACGAAGAAGGTGCGAGCACCGTACGACACGTTTTCGGACAGCCC
TCGATTAGATATTTCTAACGCCACCCCTTTCGGCACTGGGACTCTTCTTG
CTGGGGAGGAATCGAGCTTTGAAAGTGTGTCCAGGGGGTGTGTTATCTTG
TGTCACCTACGGTAGACTTACACACCACAACAGGTAAGTGGCAGGTCTCA
CAAAGCCGGAAGGTTTTTTTTCGGGGAGCTCTACATACTGCTGTATCCGC
CGCAGTCATTTTTTAGTCGTTTTTGGGGGTAGGCTTACACACTGGGTAAG
TGACAGGTCTCAAAAATCCGGAAGGCTTTCTCCTTCGGGGAGCTTGGCTC
AGAAGGGAAAACGGCGGTTCCAAGGCGCTCTGTGTAGTTCGCAATGCTCT
CGTAGTGTTAAAGAACACTCGATTCAGGAACAAAGGGACGTACGCGGCAC
CCATCCATTGGATTTCTGGTCCACCTGGGTGTAGTCGGGGTTGGACTCGG
CGGGTGTTTCAGCCCCCTATCTATCGCTAGGCCAGGCTCGGGTGTGGATT
GATGCGGGGACTCAGTAATACTTTTAAATAGTTGCTTCCATTGCGGCTTT
TGAGCTTGAAGGATAAAAACACCGATGTTTTTTATCTGGAGAACTTTGAG
CTGTTCACACACGTTCCCTGTCCACAGCGTGCCTCGGTTGGGGGTATTTC
TATCCCCCCCCCCCCCCCCTGTGTGACGCTGGCGCAGTTACGCAACCCGT
CTTGCCTGACTTGACAGCAAGTTTTGTGTGTCCTCGCTACCCCTTGCCTG
CGCGCCCGCTGCCTCCGCGCTGGCAGGAGCCGAGACTGCGTCAAGGCCCA
CCAAGGCGCGATCAAGGTCACCCAGGCCATCGCCGCCGCTCTGAGAGGAG
CGAACGACGGCGCCCCAGCCGAAGGCAGTACCGGCGACAAGAGAGCCAGC
GCGCCGTCGTCTCCGACCACCACTCCCGAACAGCGCGCCGCCGCCCCTCC
TGCCGTCGACGAGCAAGAGACCGAGCAGCGCCCGGAAGCACCCACGCCGT
CGGCCACGACCCCGGTTGGAGCAGGAGGAGAGGATGCTGCCGCTGCCGCT
ACCGCTACCGCTACCGCTGCCGCTGCCGCCCCTTTCGCAGCCGGCGACTC
GTCGGGTGCAAGCTCTGCCGGCGGCTCCTCCGCAGGTGTCTCCGACGGTG
GCGGCGCGTCTGTTGTCGTGGTCGGGCAGAAGAAAGGCGGGGAGAGCGGC
GGCGGCGGCAGAGGTGCTAGACCCGTGCTGACCCTGATGCAGCACCTCTG
CGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13803:197..2000-

>mRNA_L-elsbetiae_contig13803.2876.1 ID=mRNA_L-elsbetiae_contig13803.2876.1|Name=mRNA_L-elsbetiae_contig13803.2876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig13803:197..2000- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACCGGCAAGGCAGACGTGCCACCAAGATGTCCACCGGCAAGGCA
GACGTGCCACCAAGGAGCCGAGACTGCGTCAAGGCCCACCAAGGCGCGAT
CAAGGTCACCCAGGCCATCGCCGCCGCTCTGAGAGGAGCGAACGACGGCG
CCCCAGCCGAAGGCAGTACCGGCGACAAGAGAGCCAGCGCGCCGTCGTCT
CCGACCACCACTCCCGAACAGCGCGCCGCCGCCCCTCCTGCCGTCGACGA
GCAAGAGACCGAGCAGCGCCCGGAAGCACCCACGCCGTCGGCCACGACCC
CGGTTGGAGCAGGAGGAGAGGATGCTGCCGCTGCCGCTACCGCTACCGCT
ACCGCTGCCGCTGCCGCCCCTTTCGCAGCCGGCGACTCGTCGGGTGCAAG
CTCTGCCGGCGGCTCCTCCGCAGGTGTCTCCGACGGTGGCGGCGCGTCTG
TTGTCGTGGTCGGGCAGAAGAAAGGCGGGGAGAGCGGCGGCGGCGGCAGA
GGTGCTAGACCCGTGCTGACCCTGATGCAGCACCTCTGCGTGGAGCCGAG
ACTGCGTCAAGGCCCACCAAGGCGCGATCAAGGTCACCCAGGCCATCGCC
GCCGCTCTGAGAGGAGCGAACGACGGCGCCCCAGCCGAAGGCAGTACCGG
CGACAAGAGAGCCAGCGCGCCGTCGTCTCCGACCACCACTCCCGAACAGC
GCGCCGCCGCCCCTCCTGCCGTCGACGAGCAAGAGACCGAGCAGCGCCCG
GAAGCACCCACGCCGTCGGCCACGACCCCGGTTGGAGCAGGAGGAGAGGA
TGCTGCCGCTGCCGCTACCGCTACCGCTACCGCTGCCGCTGCCGCCCCTT
TCGCAGCCGGCGACTCGTCGGGTGCAAGCTCTGCCGGCGGCTCCTCCGCA
GGTGTCTCCGACGGTGGCGGCGCGTCTGTTGTCGTGGTCGGGCAGAAGAA
AGGCGGGGAGAGCGGCGGCGGCGGCAGAGGTGCTAGACCCGTGCTGACCC
TGATGCAGCACCTCTGCGTG
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