mRNA_L-elsbetiae_contig13782.2866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13782.2866.1
Unique NamemRNA_L-elsbetiae_contig13782.2866.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13782.2866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13782contigL-elsbetiae_contig13782:574..1603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.8352413-CDS-L-elsbetiae_contig13782:575..8061622815538.8352413-CDS-L-elsbetiae_contig13782:575..806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13782 576..806 -
1691682947.7610633-CDS-L-elsbetiae_contig13782:575..8061691682947.7610633-CDS-L-elsbetiae_contig13782:575..806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13782 576..806 -
1622815538.854306-CDS-L-elsbetiae_contig13782:1540..16031622815538.854306-CDS-L-elsbetiae_contig13782:1540..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13782 1541..1603 -
1691682947.7703302-CDS-L-elsbetiae_contig13782:1540..16031691682947.7703302-CDS-L-elsbetiae_contig13782:1540..1603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13782 1541..1603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13782.2866.1prot_L-elsbetiae_contig13782.2866.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13782 576..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13782.2866.1

>prot_L-elsbetiae_contig13782.2866.1 ID=prot_L-elsbetiae_contig13782.2866.1|Name=mRNA_L-elsbetiae_contig13782.2866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
GGSGGGAGAGGKGSSGGAKKKPKAGAQSGEAAGKGGGGPAAPAKKKRKAP
GEGTAAKNSPKAATASPATKPSSSSSSSSSATASTATAAAMPPTTAVV
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mRNA from alignment at L-elsbetiae_contig13782:574..1603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13782.2866.1 ID=mRNA_L-elsbetiae_contig13782.2866.1|Name=mRNA_L-elsbetiae_contig13782.2866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1030bp|location=Sequence derived from alignment at L-elsbetiae_contig13782:574..1603- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCAGCGGCGGCGGCGCTGGCGCAGGCGGGAAGGGCTCATCAGGGGG
AGCGAAGAAAAAGGTAACGGTGTGTGCGTCTATGTACTACTGTGTAGGCC
GTGAGCTGCATGCAGTGTACGGGGCAAGCAAGCCCCCGAGAGGTACGGGA
TGAACCCTTTGACGATGCACGCACGGCTTTGGCTGTTGCTGTGGCCACGG
CCATAGGGTGGGTTTTGGTAGCTTTATCTGCCGTGCACTGCTTGCTGCCT
GTGGCGGTGCTCGCTGGTTGGTGCTCTGAGGGGGGGAGAGGTCACTGCAT
CACATCATCATCATCATCATCATCATCATGGAAGGATGGAACGGGCAATC
TGGTCGATTTTATTTATTTTAGTTGTTGGTGTGCGTGCGTGTGCGTGCGT
GTGGGTGCGTGCCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGG
GAAGGTCCTGTGCACGTGCGTGTGCGTATCTATGCATCATATGCGTGAGA
GTTACATAGAATGCCGTGGCTGCTTTCGGGGTGTCTACAATCCTCCGGAA
AAACCTCGCTCTCCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCAAAACCACCCCCCGGGGCGCCCGCGGGCGCGCCCGCCGGGGGGG
GGGGGGGGGGNNNNNNNNNNCCCCATCTGCGGTCGGATGTCCAAGAATGC
CGCGGGGGCTTTCGGGGGGGCCACCCCCCCCCCGAAACCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTGCACCAACCAACACATCTGAAAGCCT
AAGGCGGGGGCTCAGTCGGGCGAAGCTGCCGGGAAAGGGGGCGGGGGCCC
AGCTGCCCCGGCCAAGAAGAAGAGAAAAGCTCCCGGCGAGGGCACAGCCG
CCAAGAATAGCCCCAAGGCCGCCACTGCTTCCCCCGCCACCAAACCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCGCGACCGCGTCGACCGCAACAGCTGC
GGCCATGCCCCCCACCACGGCCGTCGTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13782:574..1603-

>mRNA_L-elsbetiae_contig13782.2866.1 ID=mRNA_L-elsbetiae_contig13782.2866.1|Name=mRNA_L-elsbetiae_contig13782.2866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig13782:574..1603- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCAGCGGCGGCGGCGCTGGCGCAGGCGGGAAGGGCTCATCAGGGGG
AGCGAAGAAAAAGGGCGGCAGCGGCGGCGGCGCTGGCGCAGGCGGGAAGG
GCTCATCAGGGGGAGCGAAGAAAAAGCCTAAGGCGGGGGCTCAGTCGGGC
GAAGCTGCCGGGAAAGGGGGCGGGGGCCCAGCTGCCCCGGCCAAGAAGAA
GAGAAAAGCTCCCGGCGAGGGCACAGCCGCCAAGAATAGCCCCAAGGCCG
CCACTGCTTCCCCCGCCACCAAACCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCGCGACCGCGTCGACCGCAACAGCTGCGGCCATGCCCCCCACCACGGC
CGTCGTCCCTAAGGCGGGGGCTCAGTCGGGCGAAGCTGCCGGGAAAGGGG
GCGGGGGCCCAGCTGCCCCGGCCAAGAAGAAGAGAAAAGCTCCCGGCGAG
GGCACAGCCGCCAAGAATAGCCCCAAGGCCGCCACTGCTTCCCCCGCCAC
CAAACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCGACCGCGTCGACCG
CAACAGCTGCGGCCATGCCCCCCACCACGGCCGTCGTC
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