mRNA_L-elsbetiae_contig13768.2856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13768.2856.1
Unique NamemRNA_L-elsbetiae_contig13768.2856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: A0A6H5KGL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.300e-41
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:  190 TKSRKDLLVDPQRYLEAIRAPGKSG-KTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDGTKLTSAQLRHADVVLGAGRK 525
            TKSR +L+ DP R++EA R   K   K P+W D  A+RVGA+TI KLGRLAP + GSH+K+HI+PVGFRSSRIFWS+K PLQRTLY+C+ILDG+KLT   L+H +V+LGAG+K
Sbjct:    2 TKSRAELVADPYRFMEAARGSTKGAWKIPSWSDGYALRVGAVTIQKLGRLAPELAGSHTKSHIFPVGFRSSRIFWSSKNPLQRTLYVCEILDGSKLTEHHLQHDEVILGAGKK 114
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 7.350e-41
Identity = 73/113 (64.60%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:  190 TKSRKDLLVDPQRYLEAIRAPGKSG-KTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDGTKLTSAQLRHADVVLGAGRK 525
            TKSR +L+ DP R++EA R   K   K P+W D  A+RVGA+TI KLGRLAP + GSH+K+H++PVGFRSSRIFWS+K PLQRTLY+C+ILDG+KLT   LRH +VVLGAG+K
Sbjct: 2560 TKSRAELVADPYRFMEATRGSTKGAWKVPSWSDGYALRVGAVTIQKLGRLAPQLAGSHTKSHMFPVGFRSSRIFWSSKNPLQRTLYVCEILDGSKLTDHPLRHDEVVLGAGKK 2672
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: A0A3F2RGE1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGE1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.210e-11
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:  199 RKDLLVDPQRYLEAIRAPGKSGKTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDGTKLTSAQLRHAD 501
            R+ L  DP   +  +R      K          RVGALT+H LG +  G    H++  IYP+GFRSSRIFWST+   +R LY C ++  T++   + R  +
Sbjct:  855 RRSLFSDPPIIVIDVRKKRLDAKRGIKPRPMCYRVGALTVHTLGHVFVGNTSFHTRVAIYPLGFRSSRIFWSTRHLAKRCLYEC-VISSTEIEERRARQKE 954
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: A0A1V9Z8T1_9STRA (Histone-lysine N-methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8T1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.380e-11
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  217 DPQRYLEAIRAPGKSGKTPTWDDDQ-----AMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDIL 459
            +P R+L   + P  SGK       Q       RVGALT+H LG +  G    H+ + +YPVGFRS+RIFWS   P QR LY C+IL
Sbjct: 1815 EPLRFLMCEQDP-PSGKAKRLSKTQLAKGVCYRVGALTVHALGTIEVGNDAFHTVSTLYPVGFRSTRIFWSAVTPQQRCLYECEIL 1899
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: K3X9C4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9C4_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-10
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  217 DPQRYLEAIRA-----PGKSGKTPTWDD-DQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDGTKLTSAQLRHADVVLG 513
            +P+R+L +        P K G + T     Q  R+GALT+H LG +  G P  HS+  IYP+GFRS+RIFWS++    R LY C I +      A+ + A +V G
Sbjct: 1669 EPRRHLRSDLPILGSDPKKKGGSATKSKRQQCYRLGALTVHSLGHIVVGNPTFHSRDAIYPLGFRSTRIFWSSRSLETRCLYECVITNTDIEERAKKKKARLVSG 1773
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: W2JP06_PHYPR (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JP06_PHYPR)

HSP 1 Score: 68.2 bits (165), Expect = 8.270e-10
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  244 RAPGKSGKTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDI 456
            RA  K G  P        RVGALT+H LG +  G    H++T+IYP+GFRS+RIFWST+    R LY C I
Sbjct:  377 RAELKRGIKPR---PMCYRVGALTVHSLGHIFVGNGSFHTRTNIYPLGFRSTRIFWSTRHLATRCLYECVI 444
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: A0A670J8Y0_PODMU (Uncharacterized protein n=6 Tax=Episquamata TaxID=1329912 RepID=A0A670J8Y0_PODMU)

HSP 1 Score: 67.8 bits (164), Expect = 8.830e-10
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  295 MRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDG 465
            + +G LT++ LG +    PG H++T IYPVG+ S+RIF ST+RP+ R LY C I DG
Sbjct:  213 IALGPLTVYSLGEIVTDRPGFHTETAIYPVGYCSTRIFASTRRPVHRCLYTCQIKDG 269
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: M4B1Q0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1Q0_HYAAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.240e-10
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:  187 QTKSRKDLLVDPQRYL-----EAIRAPGKSGKTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDILDGTKLTSAQLRHA 498
            +T+ R+ L+ DP         +  RA  K G  P        RVGALT+H LG +  G    HS+T IYP+GFRS+RIFWST+    R LY C ++  T++     RHA
Sbjct: 2195 RTEPRRCLVSDPPLLTAWDLKKKKRAELKRGIKPR---PICYRVGALTVHSLGHIFVGNGSFHSRTAIYPLGFRSTRIFWSTRNLGTRCLYEC-VISSTEIED---RHA 2296
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: A0A225WQR0_9STRA (Histone-lysine N-methyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQR0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.290e-10
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  211 LVDPQRYLEAIRAPGKSGKTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDI 456
            LV+     +  RA  K G  P        RVGALT+H LG +  G    H++T IYP+GFRS+RIFWST++   R LY C I
Sbjct: 2531 LVNVSDIKKKKRAELKRGIKPR---PMCYRVGALTVHSLGHIFVGNGSFHTRTAIYPLGFRSTRIFWSTRQLATRCLYECAI 2609
[Close]
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Match: W2QP06_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QP06_PHYPN)

HSP 1 Score: 68.2 bits (165), Expect = 9.300e-10
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  244 RAPGKSGKTPTWDDDQAMRVGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLCDI 456
            RA  K G  P        RVGALT+H LG +  G    H++T+IYP+GFRS+RIFWST+    R LY C I
Sbjct: 2634 RAELKRGIKPR---PMCYRVGALTVHSLGHIFVGNGSFHTRTNIYPLGFRSTRIFWSTRHLATRCLYECVI 2701
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13768.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGL8_9PHAE2.300e-4163.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU3_ECTSI7.350e-4164.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3F2RGE1_9STRA4.210e-1136.63Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A1V9Z8T1_9STRA4.380e-1145.35Histone-lysine N-methyltransferase n=1 Tax=Achlya ... [more]
K3X9C4_GLOUD1.470e-1039.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2JP06_PHYPR8.270e-1049.30Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A670J8Y0_PODMU8.830e-1050.88Uncharacterized protein n=6 Tax=Episquamata TaxID=... [more]
M4B1Q0_HYAAE9.240e-1040.37Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A225WQR0_9STRA9.290e-1045.12Histone-lysine N-methyltransferase n=1 Tax=Phytoph... [more]
W2QP06_PHYPN9.300e-1049.30Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13768contigL-elsbetiae_contig13768:1043..2916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue2.5e-35
Seed eggNOG ortholog2880.D8LHU3
Preferred namePHF6
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09186,ko:K09188,ko:K11422,ko:K14959,ko:K18494,ko:K22371
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,map00310,map04934,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000980,GO:0000981,GO:0001012,GO:0001067,GO:0001158,GO:0001227,GO:0001541,GO:0001654,GO:0001894,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007482,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007623,GO:0007632,GO:0008023,GO:0008092,GO:0008150,GO:0008152,GO:0008157,GO:0008168,GO:0008170,GO:0008213,GO:0008270,GO:0008276,GO:0008285,GO:0008306,GO:0008354,GO:0008406,GO:0008542,GO:0008585,GO:0008757,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016458,GO:0016477,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030728,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032922,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035065,GO:0035097,GO:0035162,GO:0035216,GO:0035295,GO:0035326,GO:0035640,GO:0036211,GO:0040011,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042800,GO:0042802,GO:0042803,GO:0042826,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043933,GO:0043966,GO:0043967,GO:0043984,GO:0044030,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044648,GO:0044665,GO:0044703,GO:0044728,GO:0044877,GO:0045137,GO:0045322,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046872,GO:0046914,GO:0046983,GO:0048096,GO:0048167,GO:0048168,GO:0048172,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048568,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051219,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0060216,GO:0060249,GO:0060255,GO:0060429,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0071339,GO:0071440,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0097110,GO:0097159,GO:0097485,GO:0097659,GO:0099177,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901564,GO:1901576,GO:1901674,GO:1901983,GO:1902036,GO:1902275,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1905269,GO:1905642,GO:1990234,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000615,GO:2000736,GO:2000756,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141,GO:2001252
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759,KOG1084@2759,KOG4443@2759
EC2.1.1.43,2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04121
Exons3
Model size621
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13768.2856.1prot_L-elsbetiae_contig13768.2856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13768 1043..2916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.9779148-CDS-L-elsbetiae_contig13768:1042..12651622815537.9779148-CDS-L-elsbetiae_contig13768:1042..1265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 1043..1265 -
1691682947.2519321-CDS-L-elsbetiae_contig13768:1042..12651691682947.2519321-CDS-L-elsbetiae_contig13768:1042..1265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 1043..1265 -
1622815537.9936273-CDS-L-elsbetiae_contig13768:1847..19781622815537.9936273-CDS-L-elsbetiae_contig13768:1847..1978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 1848..1978 -
1691682947.2682946-CDS-L-elsbetiae_contig13768:1847..19781691682947.2682946-CDS-L-elsbetiae_contig13768:1847..1978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 1848..1978 -
1622815538.0056694-CDS-L-elsbetiae_contig13768:2649..29161622815538.0056694-CDS-L-elsbetiae_contig13768:2649..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 2650..2916 -
1691682947.2759106-CDS-L-elsbetiae_contig13768:2649..29161691682947.2759106-CDS-L-elsbetiae_contig13768:2649..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13768 2650..2916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13768.2856.1

>prot_L-elsbetiae_contig13768.2856.1 ID=prot_L-elsbetiae_contig13768.2856.1|Name=mRNA_L-elsbetiae_contig13768.2856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
AAPPQPPAPSGGANIGEAVASAASTASAASAASAASAATAAAAAAAAPPA
VPPREMVKTPVLQTKSRKDLLVDPQRYLEAIRAPGKSGKTPTWDDDQAMR
VGALTIHKLGRLAPGIPGSHSKTHIYPVGFRSSRIFWSTKRPLQRTLYLC
DILDGTKLTSAQLRHADVVLGAGRKRRRPGGGGGGPAAATAGAGAGTGKG
TTAASRG
back to top

mRNA from alignment at L-elsbetiae_contig13768:1043..2916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13768.2856.1 ID=mRNA_L-elsbetiae_contig13768.2856.1|Name=mRNA_L-elsbetiae_contig13768.2856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1874bp|location=Sequence derived from alignment at L-elsbetiae_contig13768:1043..2916- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCCGCCACAGCCCCCGGCCCCCTCGGGGGGTGCAAACATCGGCGA
GGCTGTTGCCTCTGCCGCCTCCACCGCCTCTGCCGCCTCCGCCGCCTCCG
CCGCCTCGGCCGCCACCGCCGCTGCAGCGGCAGCGGCAGCTCCTCCGGCG
GTGCCGCCGCGTGAGATGGTGAAGACCCCCGTGCTGCAGACCAAGTCTCG
GAAGGACCTGCTCGTGGACCCGCAACGGTACCTGGAGGCGATAAGAGCCC
CGGGGAAGAGCGGAAAGGTGGGGATACTGCTGCTGGTGCTGCTGGTGCTG
CTGGTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGCCGTTGCTGCTGCC
GCCGTTGCGGTTAATTTGCGGTCGAGTCTTGAGGCGATTTTCGGTTTGGC
ACAGGAGCAGCGCAGGCTATTTTTTTTCGTGTCGGAACATCGTTCATGGA
CTTACGGGACGGACGGGAGTGCTGTTTATTGTCGGCGGCGTCGATATTAC
CACGAACCGGTTTGCTTCGCGGCTCCAGCGACTCGTCCGAGGCTGCTCTC
TCTTCTCTTTTCTCCCCTTGTCGTGAGAAAGGCTGCCGTGCTGTGTCCCC
CTCCACTTCTCCTCGCAACGCAACCCATGTGTCACATGTGCATGTCCGAA
ACGATACAGGCTATGTAGCGGATTTTTATTCTCTGTATTTTCGTATTACT
TTTGGTAGGTAGTAAACGCCAGCGGCTTCACGTCCACAACTCATGAAGAC
CGCCTTCCCAGAGGGACTGATATAAGCACACTAGGGCTGCCATTCATGGC
GCCCTCGGCCACAGCAGTAGTACAAAACCACGTACAACTCGTACTTTTTT
AATTTATCAGTCGGCTGACAGTCCCGCTGACAGTTCCGTTTTTCGTTTTG
TCGCTGTTGTGTGTTGCCGTGTTGTCAAACCTGATCAGACCCCCACCTGG
GACGACGACCAAGCGATGCGAGTGGGGGCGCTCACGATCCACAAGCTCGG
CCGGTTAGCGCCGGGAATCCCGGGGTCACACTCCAAGACCCACATCTACC
CCGTGGGCTTCCGGTCCTCGTGAGTGCGCGGGTCGAGTGGCACGTGTGTT
CGGGAGGGCCGGGCGTAGTTTGGGAGGGGCGGACGTAATGCAGAGCGCAG
GGAATGTCTTTTATTTTCGCGTGTCTAATCATTTTTTGCCTTTTGTCTTG
AGGGTGCAGTTCTGTCTGGCGATTCCCCTGTTGGTCGTGTTGGTGTAGCT
GGTCAGGCTGGCTGGTGTCACTGCTGGTTGCGTTGTTGATGCCGATAGCG
GCGCGATTGTTTGTCCCATGACGCGCAGCTGTGTGTGTGTGTGTGTGTGT
GTGTTGTGTGTGTGTGTGTGTGTGTGTGTGGTTGTATGCGTCCCGTCACT
ACTGCTGTGTGTGTGTGTGTCACTGCTGTGGGCTTGCGGATTGGCTGATC
TTTTAAGCCCTCGGAAGGATGGGCCACCGTCGTTTGCCACGTCCATACGC
GTACCATGTCTCGCCTGGTGTTCCATGTTTTCCATGTTTTTTTTTCTTGC
TTCACTTTTTCTTTAGAAACTAACCTTGTACATACGTATGCCCCCCCCCC
CTCTCTTCCGCCGGAACCCCCACGCTGTCGCTTATGACTCCCCCCAAAAA
GGCGCATCTTCTGGTCCACGAAACGCCCCCTTCAGCGCACCCTGTACCTC
TGCGACATCCTGGACGGCACCAAGCTCACCAGCGCCCAGCTGCGGCACGC
CGACGTCGTTCTCGGCGCCGGGCGGAAGAGAAGGAGACCAGGCGGCGGCG
GCGGCGGCCCGGCGGCTGCGACGGCAGGGGCAGGGGCGGGGACAGGAAAG
GGAACGACGGCCGCCTCTCGAGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13768:1043..2916-

>mRNA_L-elsbetiae_contig13768.2856.1 ID=mRNA_L-elsbetiae_contig13768.2856.1|Name=mRNA_L-elsbetiae_contig13768.2856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig13768:1043..2916- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCCGCCACAGCCCCCGGCCCCCTCGGGGGGTGCAAACATCGGCGA
GGCTGTTGCCTCTGCCGCCTCCACCGCCTCTGCCGCCTCCGCCGCCTCCG
CCGCCTCGGCCGCCACCGCCGCTGCAGCGGCAGCGGCAGCTCCTCCGGCG
GTGCCGCCGCGTGAGATGGTGAAGACCCCCGTGCTGCAGACCAAGTCTCG
GAAGGACCTGCTCGTGGACCCGCAACGGTACCTGGAGGCGATAAGAGCCC
CGGGGAAGAGCGGAAAGGCGGCGCCGCCACAGCCCCCGGCCCCCTCGGGG
GGTGCAAACATCGGCGAGGCTGTTGCCTCTGCCGCCTCCACCGCCTCTGC
CGCCTCCGCCGCCTCCGCCGCCTCGGCCGCCACCGCCGCTGCAGCGGCAG
CGGCAGCTCCTCCGGCGGTGCCGCCGCGTGAGATGGTGAAGACCCCCGTG
CTGCAGACCAAGTCTCGGAAGGACCTGCTCGTGGACCCGCAACGGTACCT
GGAGGCGATAAGAGCCCCGGGGAAGAGCGGAAAGACCCCCACCTGGGACG
ACGACCAAGCGATGCGAGTGGGGGCGCTCACGATCCACAAGCTCGGCCGG
TTAGCGCCGGGAATCCCGGGGTCACACTCCAAGACCCACATCTACCCCGT
GGGCTTCCGGTCCTCACCCCCACCTGGGACGACGACCAAGCGATGCGAGT
GGGGGCGCTCACGATCCACAAGCTCGGCCGGTTAGCGCCGGGAATCCCGG
GGTCACACTCCAAGACCCACATCTACCCCGTGGGCTTCCGGTCCTCGCGC
ATCTTCTGGTCCACGAAACGCCCCCTTCAGCGCACCCTGTACCTCTGCGA
CATCCTGGACGGCACCAAGCTCACCAGCGCCCAGCTGCGGCACGCCGACG
TCGTTCTCGGCGCCGGGCGGAAGAGAAGGAGACCAGGCGGCGGCGGCGGC
GGCCCGGCGGCTGCGACGGCAGGGGCAGGGGCGGGGACAGGAAAGGGAAC
GACGGCCGCCTCTCGAGGGGCGCATCTTCTGGTCCACGAAACGCCCCCTT
CAGCGCACCCTGTACCTCTGCGACATCCTGGACGGCACCAAGCTCACCAG
CGCCCAGCTGCGGCACGCCGACGTCGTTCTCGGCGCCGGGCGGAAGAGAA
GGAGACCAGGCGGCGGCGGCGGCGGCCCGGCGGCTGCGACGGCAGGGGCA
GGGGCGGGGACAGGAAAGGGAACGACGGCCGCCTCTCGAGGG
back to top