mRNA_L-elsbetiae_contig13766.2855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13766.2855.1
Unique NamemRNA_L-elsbetiae_contig13766.2855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A6H5KWH7_9PHAE (XRN_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.930e-36
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 171
            MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 57
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.470e-31
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 168
            MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQ+
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQL 56
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.010e-26
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 168
            MGVPKFYRW+SERYPKINQIVSD++L+PEFDNLYLDMNGILH CTHPNDD LS Q+
Sbjct:    1 MGVPKFYRWLSERYPKINQIVSDTSLIPEFDNLYLDMNGILHGCTHPNDDSLSKQL 56
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A7S1XZW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZW9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.470e-25
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQ 165
            MGVPKFYRW+SER+PKIN ++SD TLLPEFDN+YLDMNGILH CTHP+DD LS +
Sbjct:    1 MGVPKFYRWLSERFPKINTVISDLTLLPEFDNMYLDMNGILHGCTHPSDDELSKE 55
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 6.990e-25
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPND 147
            MGVPKFYRW+SERYP INQ++SD TLLPEFDNLYLDMNGILH C+HP D
Sbjct:    1 MGVPKFYRWLSERYPLINQLISDETLLPEFDNLYLDMNGILHNCSHPGD 49
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.670e-24
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPN 144
            MGVPKFYRWISERYPKINQ+++D+ LLPEFD+LYLDMNGI+H CTHPN
Sbjct:    1 MGVPKFYRWISERYPKINQVITDTALLPEFDHLYLDMNGIIHGCTHPN 48
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A418FLG0_9STRA (5'-3' exoribonuclease n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FLG0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.570e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 171
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+DD +  ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDDEVCEELG 57
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: W4G3K4_9STRA (5'-3' exoribonuclease 1 n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3K4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.570e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 171
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+DD +  ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDDEVCEELG 57
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A485LQA0_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQA0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.140e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 171
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+D  +S ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDQEVSEELG 57
[Close]
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Match: A0A0M3IZI5_ANISI (5'-3' exoribonuclease 1 (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IZI5_ANISI)

HSP 1 Score: 92.8 bits (229), Expect = 3.140e-22
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 168
            MGVPKFYRWISERYP +++IV+D  + PEFDNLYLDMNGI+H+CTHPNDD +S ++
Sbjct:    1 MGVPKFYRWISERYPCLSEIVTDRQI-PEFDNLYLDMNGIIHSCTHPNDDDVSFRI 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13766.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWH7_9PHAE1.930e-36100.00XRN_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FME5_ECTSI4.470e-3198.215'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4G8_9STRA1.010e-2685.71XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1XZW9_9STRA1.470e-2578.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4DF97_HETAK6.990e-2583.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UCD1_9STRA1.670e-2483.33Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A418FLG0_9STRA1.570e-2270.185'-3' exoribonuclease n=4 Tax=Aphanomyces astaci T... [more]
W4G3K4_9STRA1.570e-2270.185'-3' exoribonuclease 1 n=6 Tax=Aphanomyces astaci... [more]
A0A485LQA0_9STRA2.140e-2270.185'-3' exoribonuclease 1 n=1 Tax=Aphanomyces stella... [more]
A0A0M3IZI5_ANISI3.140e-2271.435'-3' exoribonuclease 1 (inferred by orthology to ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13766contigL-elsbetiae_contig13766:3792..3962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue6.5e-26
Seed eggNOG ortholog2880.D7FME5
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.9392092-CDS-L-elsbetiae_contig13766:3791..39621622815537.9392092-CDS-L-elsbetiae_contig13766:3791..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13766 3792..3962 +
1691682947.2392461-CDS-L-elsbetiae_contig13766:3791..39621691682947.2392461-CDS-L-elsbetiae_contig13766:3791..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13766 3792..3962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13766.2855.1prot_L-elsbetiae_contig13766.2855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13766 3792..3962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13766.2855.1

>prot_L-elsbetiae_contig13766.2855.1 ID=prot_L-elsbetiae_contig13766.2855.1|Name=mRNA_L-elsbetiae_contig13766.2855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDD
GLSAQVG
back to top

mRNA from alignment at L-elsbetiae_contig13766:3792..3962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13766.2855.1 ID=mRNA_L-elsbetiae_contig13766.2855.1|Name=mRNA_L-elsbetiae_contig13766.2855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig13766:3792..3962+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGTTCCCAAGTTCTACAGGTGGATCTCGGAGCGGTACCCGAAGAT
CAACCAGATCGTCTCGGACTCGACCCTGCTCCCGGAGTTCGACAACCTGT
ACCTCGACATGAACGGCATCCTGCACACGTGCACGCACCCCAACGACGAC
GGGCTCAGCGCTCAGGTGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13766:3792..3962+

>mRNA_L-elsbetiae_contig13766.2855.1 ID=mRNA_L-elsbetiae_contig13766.2855.1|Name=mRNA_L-elsbetiae_contig13766.2855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig13766:3792..3962+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGTTCCCAAGTTCTACAGGTGGATCTCGGAGCGGTACCCGAAGAT
CAACCAGATCGTCTCGGACTCGACCCTGCTCCCGGAGTTCGACAACCTGT
ACCTCGACATGAACGGCATCCTGCACACGTGCACGCACCCCAACGACGAC
GGGCTCAGCGCTCAGGTGGGGATGGGGGTTCCCAAGTTCTACAGGTGGAT
CTCGGAGCGGTACCCGAAGATCAACCAGATCGTCTCGGACTCGACCCTGC
TCCCGGAGTTCGACAACCTGTACCTCGACATGAACGGCATCCTGCACACG
TGCACGCACCCCAACGACGACGGGCTCAGCGCTCAGGTGGGG
back to top