mRNA_L-elsbetiae_contig1376.2849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1376.2849.1
Unique NamemRNA_L-elsbetiae_contig1376.2849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1376.2849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1376contigL-elsbetiae_contig1376:18349..18998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1376.2849.1prot_L-elsbetiae_contig1376.2849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1376 18517..18972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2843177-UTR-L-elsbetiae_contig1376:18348..185161622815537.2843177-UTR-L-elsbetiae_contig1376:18348..18516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1376 18349..18516 +
1691682946.8854103-UTR-L-elsbetiae_contig1376:18348..185161691682946.8854103-UTR-L-elsbetiae_contig1376:18348..18516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1376 18349..18516 +
1622815537.3167894-UTR-L-elsbetiae_contig1376:18972..189981622815537.3167894-UTR-L-elsbetiae_contig1376:18972..18998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1376 18973..18998 +
1691682946.9018173-UTR-L-elsbetiae_contig1376:18972..189981691682946.9018173-UTR-L-elsbetiae_contig1376:18972..18998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1376 18973..18998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2998405-CDS-L-elsbetiae_contig1376:18516..189721622815537.2998405-CDS-L-elsbetiae_contig1376:18516..18972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1376 18517..18972 +
1691682946.8938217-CDS-L-elsbetiae_contig1376:18516..189721691682946.8938217-CDS-L-elsbetiae_contig1376:18516..18972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1376 18517..18972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1376.2849.1

>prot_L-elsbetiae_contig1376.2849.1 ID=prot_L-elsbetiae_contig1376.2849.1|Name=mRNA_L-elsbetiae_contig1376.2849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MLSGLLSFSHHREVVLARPAANRTRSGGNDTQVGTCVCEVGKASHYVVIG
KRPDLLSENGAFHSCARALSSVLVPATERELVRPVLATQVASGALLGGVL
QCLDKGGWSPGHSARRGCQSGWQTSRRCQRGRHNALVVFNVAGTTSQVGQ
R*
back to top

mRNA from alignment at L-elsbetiae_contig1376:18349..18998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1376.2849.1 ID=mRNA_L-elsbetiae_contig1376.2849.1|Name=mRNA_L-elsbetiae_contig1376.2849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig1376:18349..18998+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCGGGTAGCTCGCCGGGTAGAGCCCTGCGGTGGGCAGCCGGTCATTC
GCAGGGCCCTATCTTTAGGCTTGTAGCACTTCGCAGCGGGGTGTGGGGTG
CAAACTGCGCACAGCAGCACCCAAGCCTTGCAGCCAGGTCTGCCATAGAA
AACCTCGAGCGAAGCTATATGCTGTCAGGATTGCTGTCATTTTCACACCA
TAGAGAGGTTGTTTTGGCGAGACCTGCTGCAAACCGTACTCGATCGGGCG
GGAACGACACACAGGTCGGTACATGTGTATGTGAGGTAGGCAAAGCCTCT
CACTATGTAGTGATAGGCAAGCGGCCTGACTTACTTTCCGAAAACGGGGC
ATTCCACAGCTGCGCTCGCGCTTTGAGTTCCGTTCTCGTGCCAGCTACAG
AGAGAGAGTTGGTTCGTCCTGTGCTTGCGACACAGGTGGCTAGTGGGGCA
CTTTTGGGGGGGGTTCTGCAATGTCTGGACAAAGGAGGTTGGTCCCCCGG
ACACAGCGCCCGGAGAGGTTGTCAAAGTGGCTGGCAAACGTCTCGTCGTT
GTCAACGTGGCCGGCATAACGCCCTTGTCGTTTTCAACGTCGCCGGCACA
ACATCCCAGGTTGGGCAACGTTGACAAATAAATAAATGAAAAGCCGCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1376:18349..18998+

>mRNA_L-elsbetiae_contig1376.2849.1 ID=mRNA_L-elsbetiae_contig1376.2849.1|Name=mRNA_L-elsbetiae_contig1376.2849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig1376:18349..18998+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTCAGGATTGCTGTCATTTTCACACCATAGAGAGGTTGTTTTGGC
GAGACCTGCTGCAAACCGTACTCGATCGGGCGGGAACGACACACAGGTCG
GTACATGTGTATGTGAGGTAGGCAAAGCCTCTCACTATGTAGTGATAGGC
AAGCGGCCTGACTTACTTTCCGAAAACGGGGCATTCCACAGCTGCGCTCG
CGCTTTGAGTTCCGTTCTCGTGCCAGCTACAGAGAGAGAGTTGGTTCGTC
CTGTGCTTGCGACACAGGTGGCTAGTGGGGCACTTTTGGGGGGGGTTCTG
CAATGTCTGGACAAAGGAGGTTGGTCCCCCGGACACAGCGCCCGGAGAGG
TTGTCAAAGTGGCTGGCAAACGTCTCGTCGTTGTCAACGTGGCCGGCATA
ACGCCCTTGTCGTTTTCAACGTCGCCGGCACAACATCCCAGGTTGGGCAA
CGTTGAATGCTGTCAGGATTGCTGTCATTTTCACACCATAGAGAGGTTGT
TTTGGCGAGACCTGCTGCAAACCGTACTCGATCGGGCGGGAACGACACAC
AGGTCGGTACATGTGTATGTGAGGTAGGCAAAGCCTCTCACTATGTAGTG
ATAGGCAAGCGGCCTGACTTACTTTCCGAAAACGGGGCATTCCACAGCTG
CGCTCGCGCTTTGAGTTCCGTTCTCGTGCCAGCTACAGAGAGAGAGTTGG
TTCGTCCTGTGCTTGCGACACAGGTGGCTAGTGGGGCACTTTTGGGGGGG
GTTCTGCAATGTCTGGACAAAGGAGGTTGGTCCCCCGGACACAGCGCCCG
GAGAGGTTGTCAAAGTGGCTGGCAAACGTCTCGTCGTTGTCAACGTGGCC
GGCATAACGCCCTTGTCGTTTTCAACGTCGCCGGCACAACATCCCAGGTT
GGGCAACGTTGA
back to top