mRNA_L-elsbetiae_contig1373.2835.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1373.2835.1
Unique NamemRNA_L-elsbetiae_contig1373.2835.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1373.2835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1373contigL-elsbetiae_contig1373:22787..24886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat protein
Ec32 orthologEc-02_003580.1
Exons2
Model size349
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1373.2835.1prot_L-elsbetiae_contig1373.2835.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1373 22920..24886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.7632344-UTR-L-elsbetiae_contig1373:22786..229191622815535.7632344-UTR-L-elsbetiae_contig1373:22786..22919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1373 22787..22919 +
1691682946.0766451-UTR-L-elsbetiae_contig1373:22786..229191691682946.0766451-UTR-L-elsbetiae_contig1373:22786..22919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1373 22787..22919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.778761-CDS-L-elsbetiae_contig1373:22919..230081622815535.778761-CDS-L-elsbetiae_contig1373:22919..23008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 22920..23008 +
1691682946.0879245-CDS-L-elsbetiae_contig1373:22919..230081691682946.0879245-CDS-L-elsbetiae_contig1373:22919..23008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 22920..23008 +
1622815535.7925572-CDS-L-elsbetiae_contig1373:24759..248861622815535.7925572-CDS-L-elsbetiae_contig1373:24759..24886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 24760..24886 +
1691682946.0989714-CDS-L-elsbetiae_contig1373:24759..248861691682946.0989714-CDS-L-elsbetiae_contig1373:24759..24886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 24760..24886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1373.2835.1

>prot_L-elsbetiae_contig1373.2835.1 ID=prot_L-elsbetiae_contig1373.2835.1|Name=mRNA_L-elsbetiae_contig1373.2835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MAEETLKAVPGFDIRSGISTAASQSFQGLGCSKPIVAPGGVIHVVLNEQM
ASGGVRNHFVRASLDLSPADGR
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mRNA from alignment at L-elsbetiae_contig1373:22787..24886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1373.2835.1 ID=mRNA_L-elsbetiae_contig1373.2835.1|Name=mRNA_L-elsbetiae_contig1373.2835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:22787..24886+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCTCTCGCCATCCATCCTCTCTCGCCCCGTCACGCATCACGCCTGAC
AAGTAGGACCCACCCCTGGCAACCCCTCGGGCTCGTTGCTGAAAAACGAG
AGAAGCCTGAGCACGAGGGGCGGGGGCGGGAAGATGGCTGAAGAGACGCT
GAAAGCCGTGCCGGGGTTTGACATTCGCTCCGGGATTTCTACGGCAGCCA
GCCAATCCTTCCAAGGCTTGGGGTGAGAAGAGAAAAAGGCACAGCAGCAG
TCGGGCAGCTCGTCAAGGGTTGTCTGTCGATGTGTCTGAAAGCGCGAGAG
CGGATGACCTAGGCCTTTACTGTGTTTCCATCATGTGCGAACCCCTCCTT
CACTCTTTGTTCAAGCGCTCACCCCGTCGTCAGCTGACGCAAGAGGCAAT
GGACCTCTCCGTGGGAGACAAAGTACTTCGTTGAAGCTTGTCCCCTTTTT
CTCGCGTGCTGTTGCGTAATACAACCTACAGTCAGTAGACATGATTTGGC
ATCCAACGCATCCATAACGGGGTGCGAGTAGCGCATATCGCTTCTGATGC
CCAGGCCGTTCTTCTCTGCGTCATCCTCGTTGCAAATGCGCGCTTTAATC
ATGAGCCTGAATATCGGGAGAACGAGAGCGCACAGCCCTTTATCCCGAGC
TTTGCTTGGGGGTGGGGCTTGTGTCCTCGAGATAGTGTCCATGAGATCTT
ACAAGTAGGTATGTACGTAGACTAGCTGTGTATGTAGATCAGGACACACT
TCTCAGCATAGATACGGTACATCGTCCGGCATTTTGATTCAAAAACGCAA
CCGACAGCAAGCAGGGCGCTTTTGGCGAAGGGTGTCGGGCGCACGCACCA
CACCCCCAGCTGGTGTGTGGAGTTGTGTTATTCTCGCAAATGTTGCCCAC
GTGCAGAGGGGGGGCGCAAGCTGAGCACACTTCAAAACATAAAACTCTAA
GAGTTATTTACCGTTCATTCAAGCGCTTTCATTCACGTCCGGAAGACAGA
GAAGAGAGCGGGATCGATCTAATAATGTGGGATCTCACCTTCGTAACGGG
CCCCTGCTACAATACATACATACTGCTGTTGGCTCCGAAGAATCCAGACA
AAAAAGTAGCACATGTTATGAACAGGGTTCATCCTCTCTCACCCCCCCCC
CCCCCCCCCCCCCACGGAACGACCGACTTTATGTAATCTAAGAGACACTC
CGACAGGAGCTCNNNNNNNNNNACATACCTCCTGCTGTTGGCTCCGAAGA
ATCCAAAAAAAAAAGTAGCACATGTTATGAACAGGGTTCACCCCCTCCCC
CCCCCCCCCCCCCCCCGCGAGACTTCTCTCCGAAATATCTACCAATAGAC
AATCCTGGCGACTTCACTTGTGGAGTCGTGTGAAATTTGTCGAGAATATT
TTGATCGTGATGTCATATACACCTACATACGTTGTAGACTATTTGAGCTG
GACTATTTTCAGATAGTTCTTCTTCGCGAAAAGGAGCCACTCATTGTGTG
ACGGCGGCAAGCCGCAAAGCCTTGTCTTTTGGTATTTTCCATGCAACCAG
GGTGGGTAGGTGGGTACGCTTGACGCCCCCCTGTTTGGTGTGACTTAGAA
GAAGCATTCACGGCTAGAACATGAACGCAGGGTCACGAGCTCTGCTCGTC
ACTTCCGCGGTAGACACACCGCACACCGCCGTGCTGCGGTTTTGCGCCTC
CACAGGAAAAAAAAATTAGCCGGGCAAGTCAAGTAGTAGCCGCCTCTGCT
GGACTCTCAGCGTGCCAGAAATGATTTTACCAAAACAGCCAAACGCTTCA
TGGGGCGTCTGTATACCCACTCTGTGCAAGTACATAAGGTTTCGGAAAGG
AGGCAAACCCAGCCAGACACTTGTTATCCCGCTGTAATTTATTTAGCGCT
CCACGCCTCGTGCCCGCAACAAGAAACAAAAAAACACGCGTGTGATGGTT
TACACGCAAATTAATGCGCACAGGTGTTCGAAGCCGATTGTGGCGCCGGG
CGGCGTGATCCATGTGGTTCTCAACGAGCAGATGGCCTCGGGCGGCGTGC
GCAACCACTTCGTCAGAGCCAGCCTCGATCTGAGCCCCGCTGACGGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1373:22787..24886+

>mRNA_L-elsbetiae_contig1373.2835.1 ID=mRNA_L-elsbetiae_contig1373.2835.1|Name=mRNA_L-elsbetiae_contig1373.2835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:22787..24886+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGAAGAGACGCTGAAAGCCGTGCCGGGGTTTGACATTCGCTCCGG
GATTTCTACGGCAGCCAGCCAATCCTTCCAAGGCTTGGGATGGCTGAAGA
GACGCTGAAAGCCGTGCCGGGGTTTGACATTCGCTCCGGGATTTCTACGG
CAGCCAGCCAATCCTTCCAAGGCTTGGGGTGTTCGAAGCCGATTGTGGCG
CCGGGCGGCGTGATCCATGTGGTTCTCAACGAGCAGATGGCCTCGGGCGG
CGTGCGCAACCACTTCGTCAGAGCCAGCCTCGATCTGAGCCCCGCTGACG
GCCGGGTGTTCGAAGCCGATTGTGGCGCCGGGCGGCGTGATCCATGTGGT
TCTCAACGAGCAGATGGCCTCGGGCGGCGTGCGCAACCACTTCGTCAGAG
CCAGCCTCGATCTGAGCCCCGCTGACGGCCGG
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