mRNA_L-elsbetiae_contig137.2819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig137.2819.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE) HSP 1 Score: 633 bits (1632), Expect = 4.210e-181 Identity = 962/2702 (35.60%), Postives = 1189/2702 (44.00%), Query Frame = 1
Query: 1291 ASPPPVAPPPSLDTEGDEHTLQRTAP----VSPTAGALPEA-CDSRDSPTQLLDSGEESGSAPSSRTETDVESSG---------ETQHGGGEGPRSENGDHGGGQVGRGSAEKRGXXXXXXXXXXXXXXXGVLLLSSGS-EAGESMTPPMSFPATSFISGGRKGEEDDAHGSPRPAAEAGPDPPS------------PAGEEAVAVGLEKSCLGAEAARTEDGECAAESPCPPPAQPPSLLWLRPSEPLECAETAVLARSSGGGLRGGVGEVDSDDEHDGILSDNSRVDSDDGTAATSQSANGERVHEGRRSXXXXXXXXXLYVEPLGSSRAATDGFGGGP--------GGSPSLAGAVLETRAPRFSPSLQTEPVPGSSSG-EAAQRGGGLTQ-EWHDGMSPLTSPAAGG-PGGDGGGGFECSEGAAPVVLPHAV--TSHHVSGEQHRSASTAVDGGDD-EEESELGVCSAV-AATGLLKTAVVDLDPTNA-------IPNSSTGKGES--APTTVSPLAPPAGGGGRGRAGGEASNTSAFSRLDHEAVPEDVETAPASPVAGDFPCRVPVLSSEDAGCPNSDDGGGERCESEALPASAG---AQCAIRRGCELDDSEDDDDGGPVAVIKMTGEDPEQTSFHPEKAK--------------------------------------------------------AGVFIVFGTTSPLDDYGERKGEIVVERTDSQC--DSDSFDPSD--TDSL---DNIQAAGSEPPPSGDGGSSGGSLTSLTPVLV-LPQCSSSLVDTVSAPEAGAHENRRDADGSXXXXXXXXIKIEIFRRTATSDVDGASPSQT---EALAAGPRPPRVDASDELIGHAMETASKSKXXXXXXXXXXXXXXXXIPXXXXXXXXXXXXXXXXXQ--SRGMGWDVHQTSGFDASKIGGGILNDPALLLEERSFSNLFPGRAVGGKGGAGGKSVAKTLIVGDEGFKPAKALVVQAEDAVSIKAAAVRRNGGYGPDRALSISLELPAVHLPKPFSVDFPRQSVLNKTNSFGQPLVAVFRMPGEYWLVDHLSRKRLKVTATERPEDLMQADAAATVKLHQSLASGKGGRDERAGASSGP----SCRAEGSCTNVGGEVVSSSSRSXXXXXXREKPATVAAETIGXXXXXXXXXXXXALAADVVATSTMEALGRTQAAKFAVVPDAACGAEAPDSTGTTPPPPPLXXXXXXXXXXICVKQGCDGLSLDELAGHNEVAKRSALGGVHVVNVSHRRGFEPATLEVGLTPGLGACVMCDLDSQQRVTREVVCRRLADKAAXXXXXXXXXXXXXXXXXXRASSETGEE-VRGG----SSASRAANDNEHPWNDAKEDEGDPNVKTARLGPGILKKCHFILGRAGEYRLFYRNEESKGVSVVVKSLPLLSDEEERGSASDGWASSSEDNAVQL-----PSSGKTEVSGEGERRDSAEAESSGEDNNSAAESGSTVTAETPLEYAAAANESYSRSMLVDHGPFVSESSAAAAAATAISGFPSGSTTTNSDHAQGEFVHQRAQKKKNIKKLKRISAAAXXXXXXXXXXXXXXX------------------------ATCVKETVTAAATVAGVAVEEAVAQTNVATLLPTGPSAPLLPRDSSTDDGDAGVAGPVGRAL--VQPATSVAWGIGGPTKAGRAEEIDT-----SPGFVADGRPSFPSAAGADSADVKPKTARPAPPDGPQATRTSDSVIVDSSGRSTSPPIPAAP---------SQKPTRRSVEACEQDNGRPMRGGLGNENSGAAATPRKGSPLLPTPAAAVPATGDKKGYEMQDGESPASGTTMATA-GKGPATQASWT----GKQSTPAPSKXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSRRWDNPPAAVFTEPHPSQRGFQGPGQAGWGAPSASGVVAVPVAGGGLASTPGISAPARTKGVESRGRNPGRVGGEGPSAWDRSASRASPAVLPRAAPVS---GRAQP--------SCSHHP-VAEAATSSRPPDGGSAAQRSAAQRLRGPPASMEVRPAADKDGVPRPGPGPWQPAVHATAETGSGSGGRAKSGAEGSTRS--SSRTTTVAADDRSQATW-LSDPPDAAPPLSTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGASAAVEASTLAPSGIHDAYACSSAPSAGPAPSSSSRPQPSAAVPPVMATACSPREAQGVGTSVQPKG--------------ATPLCPGNSLGNSASLGQYTTASDQANDVSAPTTSPSSRVGAPPPVSVSRVAVTDESPSDRGSFARPSSMLGSSSAEWTHL---GRGGGGEAKETRAAGSVAGAGR-------GSRGGQIRSPPPELARSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPPPPGFTGD------HHAARALPLGCGQPAAATAT---------------------VTERRPDPVATPAHQASTPP------AGNSAAILASKPIHNRGGGXXXXXXXXXXXXXXXXDSGTRSAEQHGEGKFGNCSTKVSSEERSRRNRVLRAEAAPFYPAAYARNA------PALATPAAFPQESRLPGGGFYVEEGPDDTLPPPSPYEVQEAARMFRVYDEMMERLRTTGMDETLPNGFTPRIYDFTSGGC 8616
ASP P+ PP SLDTE E T +R S AG PE C+ R+SP Q E G +S + + E+ E + GGE +E+ GG V G L + SGS EAGE +T PATS +SGG K ++ A + A + PD PS P E AV + + A+ T G +A P LL SEP +C E VL R SGGG+ G +VDSDD+ DG LSDNSR+DSDDGTA TS S G G L EP SS AATDGFG G SP LAG VL+ AP+ S SLQ EPV S E + LT+ +W DGMSPLTSPA P D F CS+ A V+ T GEQ V G DD E+E +L S V A + TA + D + + +S G+ +S AP TVSP P G G +ASN + SR HEA + + SP D C V SS+ A CP+S DGGGERC SE ASA C+ + C DDDD G V VI+M G+DP + F PE AK AG F+V T P +D +R GEIVVE T +Q DSDSF+ +D T +L D A + GG+ + L P +V + + S++L+ S ++G + D DG K + +R +D+D + + + +G R D S E +G A E +S XXXXXXXXXXXXXXXX XX + G VH+ GFDASK+ GGI +DPALL+ E F + +P R G KGG GGKS KTLIVG +GF P+K +VV A AV IKAA+V GG G +R LSI L + V + PG Y LVD+ S KRLKVT TERP++ +Q+D+++ +LH A K +D R+ A S S AE + T GGEV++S RS +EK V A T LA + + ST E+L + + V D A GAEA T P P PL I VKQG DGL+LDELA H SAL GVHVVNVSHRRGFEPA LEVG PGLGACVMCDLDSQQRVTREVVCRRL + ++S E G V GG S A NE +DA EDE DPNVK+ARLGPGIL KC+F+LGR G+YR+ YR + S+GVSVVV+ LPL S E G + D +S+ + V P S + E RR + SA SG TA E S S ++ G + SSAAA AA A F GS + D QG FVHQRAQ KK XXXXXXXXXXXXXXX + ++T T++ + A + Q+ AT G +T D D V +G +L V+P TS + G+G A AE + S G +P+ DV+ +ARPA + + SDS +DS R TS PA + +R+VE +Q G+ +RG L E SG AA PR L P A G+++ ++ Q PA A A G+G ++ +W G S +VS RW NPPA VF +P P QR +G G G S P GGG P +SA T V+S VGGE SA S +PAVLP A + GR P +C P V+E S P G RS A RG A+ E A DK+G+PRP Q A GSG+GG K+ G+ S SS +T V RS A S+P D A STSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E S L PS + A SS++ + V + TA S + G T P S N +L TT + S T S SD G AR SSM G +S+ WTH GRGG E K T AG+ AG G+ G + S P R XXXXXXXXX L PPGF GD H +A + G + A+ T T AST P A +A LA+ + + G G SA Q G G FGNCSTK+S EERSRRNR L A +PF+PA Y A PA FP+ESRLPGGG++VEEGP+DTLPPPS +E+QEAA M +VY++MMERLRTTGMDETLPNGFTPRIYDFT GGC
Sbjct: 148 ASPFPIVPPLSLDTESGEQTPRRRKQEESFASANAGRSPEEPCEGRESPLQTFVHVGEGGPTAASDAKGEAENEAMEVIEEVGKEKEIEGGEHSENEDSKRDGGDV-----SGSGDYCCAGGDVDQEVLDDALDIGSGSNEAGEILTLSTDIPATSGVSGGCKRGDELADTASHSADKIEPDTPSRGKGTPVTEVEEPRPEATAAVAAAATVVIAK--ETSKGLRSA-------LLSPDLLSPA-SEPSKCPEL-VLERFSGGGI-GDYRDVDSDDDPDGDLSDNSRIDSDDGTALTSGSVRG-----GASEEAPPRSPVALSSEPPTSSLAATDGFGSXXXXXXXXXXGESPCLAGVVLKAEAPQVSSSLQIEPVTMRSRRMELSLVDNVLTRRDWPDGMSPLTSPAVEREPSRDDRVAFACSDDNAAAVVSSCTVDTGLATEGEQQVDMVAVVGGVDDGEKEEDLDPRSVVKGAPATVATASLGADDNDQSAERAGDVMRASEGENDSVTAPQTVSPPGPTNMDAGDGEPRADASNDTLPSRFVHEATKGETGSGQESPPHEDSSCLRQVSSSDAATCPDSSDGGGERCGSEVPKASASETHGTCSRGKSC------DDDDDGAVTVIRMVGDDPTKKYFIPETAKVRVGARVQWVLGGGTGSVSETFHVRNGCPIIKNGWVTECSFSLSASQSRFTHTFQHAGTFVVSSITLPSEDDSKR-GEIVVENTSTQSRSDSDSFESADNATSTLPDDDFHDVAILADTAATHGGAGKPVMGRLAPSMVGVSRTSAALLGAHSKADSG--DETHDLDGRGGGR-----KSDNYRSLDNTDLDDTRATHSCGVSVVESG----RSDGS-EWVGDAPEASSXXXXXXXXXXXXXXXXXXXXXXXSDSRGGVEKGGVDGGTGGTGSKGLSVHRDCGFDASKVEGGIEDDPALLINELEFLSRYPDRVAGMKGG-GGKSQGKTLIVGGQGFTPSKPMVVPAGAAVFIKAASVWPYGGGGQERVLSIGLHI-----------------------------VRTTKKPGVYTLVDNHSSKRLKVTVTERPDEPLQSDSSSVARLHPP-APEKRDKDGRSRAGSRQNAERSSSAEANSTG-GGEVLTSYPRSKKNKG-KEKSGAVPASTTSTAAT---------LAGNAASASTTESLIHAEEDESIPVADVARGAEASAGVPTAPSPLPLLPP-------IRVKQGGDGLTLDELAEH------SALHGVHVVNVSHRRGFEPAALEVGFAPGLGACVMCDLDSQQRVTREVVCRRLVGREG------------------KSSKEVGSRSVVGGLGDVSIGHGAIRGNEGAEDDAGEDEDDPNVKSARLGPGILNKCYFMLGRYGDYRISYRGDASRGVSVVVR-LPLSSSE--GGGSEDVMRASTSELEVSREGDAWPLSSDVVGASEESRRCDSXXXXXXXXXXSAVLSGPAATATESDEPQVGCATDASSSKPIEGGHELENSSAAAGAA-AGGRFSLGSAPVDWDDGQGGFVHQRAQMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAIPRDTGTSSVSRASTHLRRD--QSACATASSQG----------ATGDDDNVVL--MGSSLNRVRPPTSASRGVGISVNAADAETDGSEAAAASAGSAITDKPTSFGNPEVAPGDVESTSARPAQIGACKTRKKSDSRNLDSIDRDTSSVTPAPXXXXXXXXXXQHQGPQRTVEVGKQKKGKLVRGDLSGETSGDAA-PR----ALTPPVLAAAGAGEEEKHKPQAASGPAGAARAAAATGRGDSSMGAWRSDTKGAASYSQQYGGSTSAGNLPRASALDSGWSRTNQSHGTSVSGRWGNPPATVFAQPRPPQRILKGRGGEGERTASFGPRADDPATGGGSVGGP-VSARPSTIVVDSEEHELAGVGGESLSACGGPESIETPAVLPPAGATTTTAGRVPPGRVSSRTDTCRSRPFVSEDDCPSFSPKG-----RSTADMCRGALATSEAPVAVDKEGLPRPHSVLGQAAATGVQSVGSGNGGGGKANV-GTHESACSSLSTDVVEGGRSWANVSASNPSDVASVGSTSSTRASNFGAASTNTLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL---------------AEESMLKPSAKMQVSPPAEADR------SSTKQRHPVVVTSEVVTAGSHVDVHEAGAXXXXXXXXXXXXXXXXXXXXTTAASPSTSFRNRTTLETVTTGNVD-----------------------SATGPTSLSSSDEGGVARVSSMPGLASSGWTHAVREGRGGADE-KGTGGAGAPNPAGHAAGDDGDGAGAGGVLSEGPN--RPXXXXXXXXXXXEESSAAMVEATSLPAAATPTQAQAFQWL----PPGFGGDRLCDEAHPSAANVEEGTTKRASCTPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTTPTDIPKAAAAAAGTLATAALTSNPTGGL----------------GQNSARQGGGGGFGNCSTKISLEERSRRNRALSAGTSPFFPARYGHRGRRGYRTAQQAKPAQFPEESRLPGGGYFVEEGPNDTLPPPSAFEMQEAAHMMKVYNDMMERLRTTGMDETLPNGFTPRIYDFTDGGC 2638
BLAST of mRNA_L-elsbetiae_contig137.2819.1 vs. uniprot
Match: A0A6H5JW61_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE) HSP 1 Score: 155 bits (393), Expect = 7.740e-34 Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = 1
Query: 3691 WDVHQTSG--FDASKIGGGILNDPALLLEERSFSNLFPGRAVGGKGGAGGKSVAKTLIVGDEGFKPAKALVVQAEDAVSIKAAAVRRNGGYGPDRALSISLELPAVHLPKP-FSVDFPRQSVLNKTNSFGQPLVAVFRMPGEYWLVDHLSRKRLKVTATERPEDLMQA-DAAAT 4200
W V G D SK GGGI ND A+L++ +++S+LFP R +G G G +VA+ LIVGD GF+P+ LV+QAE AVSI+ A V+R G PDRALSISLE+P VH K F V KTN+ G PL+AVFR PG+YWLVDHLS+ RL+VTAT+R E +++A D AA+
Sbjct: 423 WGVRGVGGGGLDISKAGGGIANDAAVLVDVQTYSSLFPQRGMGVWRGHG-SAVAQVLIVGDHGFEPSGPLVLQAEAAVSIETATVKRGSGVVPDRALSISLEIPTVHSLKGIFEV--------KKTNASGSPLMAVFRKPGDYWLVDHLSKARLRVTATKRSEGVLRAKDGAAS 587
BLAST of mRNA_L-elsbetiae_contig137.2819.1 vs. uniprot
Match: D7G6R6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R6_ECTSI) HSP 1 Score: 136 bits (343), Expect = 3.160e-28 Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1
Query: 3769 EERSFSNLFPGRAVGGKGGAGGKSVAKTLIVGDEGFKPAKALVVQAEDAVSIKAAAVRRNGGYGPDRALSISLELPAVHLPKP-FSVDFPRQSVLNKTNSFGQPLVAVFRMPGEYWLVDHLSRKRLKVTATERPEDLMQADAAA 4197
+ ++S+LFP R +G G +VA+ LIVGD GF+P+ LV+QAE AVSI+ A VRR G PDRALSISLE+P VH K F V KTN+ G PL+AVFR PG YWLVDHLS+ RL+VTAT+RPE ++QA+ AA
Sbjct: 222 QREAYSSLFPQRGLG-VWPEHGSAVAQVLIVGDHGFEPSGPLVLQAEAAVSIETATVRRGSGMVPDRALSISLEIPTVHSLKGIFEV--------KKTNASGSPLMAVFRKPGAYWLVDHLSKARLRVTATKRPEGVVQAEDAA 356 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig137.2819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig137.2819.1 >prot_L-elsbetiae_contig137.2819.1 ID=prot_L-elsbetiae_contig137.2819.1|Name=mRNA_L-elsbetiae_contig137.2819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2873bp PRAGHERQQQQQRRQRLSWSRSRSPSSPNSRRLSAPHSTVGAEETEDTDLback to top mRNA from alignment at L-elsbetiae_contig137:24567..35731- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig137.2819.1 ID=mRNA_L-elsbetiae_contig137.2819.1|Name=mRNA_L-elsbetiae_contig137.2819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11165bp|location=Sequence derived from alignment at L-elsbetiae_contig137:24567..35731- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig137:24567..35731- >mRNA_L-elsbetiae_contig137.2819.1 ID=mRNA_L-elsbetiae_contig137.2819.1|Name=mRNA_L-elsbetiae_contig137.2819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=17238bp|location=Sequence derived from alignment at L-elsbetiae_contig137:24567..35731- (Laminarionema elsbetiae ELsaHSoW15)back to top |