mRNA_L-elsbetiae_contig13642.2771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13642.2771.1
Unique NamemRNA_L-elsbetiae_contig13642.2771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13642.2771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13642contigL-elsbetiae_contig13642:2113..4779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size526
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13642.2771.1prot_L-elsbetiae_contig13642.2771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13642 2301..4779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.4440248-UTR-L-elsbetiae_contig13642:2112..23001622815530.4440248-UTR-L-elsbetiae_contig13642:2112..2300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13642 2113..2300 -
1691682943.2256744-UTR-L-elsbetiae_contig13642:2112..23001691682943.2256744-UTR-L-elsbetiae_contig13642:2112..2300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13642 2113..2300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.4542587-CDS-L-elsbetiae_contig13642:2300..23161622815530.4542587-CDS-L-elsbetiae_contig13642:2300..2316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 2301..2316 -
1691682943.2345011-CDS-L-elsbetiae_contig13642:2300..23161691682943.2345011-CDS-L-elsbetiae_contig13642:2300..2316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 2301..2316 -
1622815530.4660828-CDS-L-elsbetiae_contig13642:2605..28161622815530.4660828-CDS-L-elsbetiae_contig13642:2605..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 2606..2816 -
1691682943.2426643-CDS-L-elsbetiae_contig13642:2605..28161691682943.2426643-CDS-L-elsbetiae_contig13642:2605..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 2606..2816 -
1622815530.4770188-CDS-L-elsbetiae_contig13642:4670..47791622815530.4770188-CDS-L-elsbetiae_contig13642:4670..4779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 4671..4779 -
1691682943.2508607-CDS-L-elsbetiae_contig13642:4670..47791691682943.2508607-CDS-L-elsbetiae_contig13642:4670..4779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13642 4671..4779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13642.2771.1

>prot_L-elsbetiae_contig13642.2771.1 ID=prot_L-elsbetiae_contig13642.2771.1|Name=mRNA_L-elsbetiae_contig13642.2771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
GAWLLRFAVFGDDGRLKTACSPGSAARLREPPLHFRGAVTEECRQQCNSR
GRPSRCREASSAVVDVVVAGLGAAQHSREWERVGEEAAWKGDCSRTLIGN
DTITQFRFANK*
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mRNA from alignment at L-elsbetiae_contig13642:2113..4779-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13642.2771.1 ID=mRNA_L-elsbetiae_contig13642.2771.1|Name=mRNA_L-elsbetiae_contig13642.2771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2667bp|location=Sequence derived from alignment at L-elsbetiae_contig13642:2113..4779- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTTGGTTGCTGCGGTTCGCAGTTTTCGGTGATGATGGTCGGCTGAA
AACTGCCTGCAGCCCAGGGTCTGCTGCCAGACTACGTGAACCCCCCCTGC
ATTTCCGAGGTGTGTGTGCTGATGTGGGGTGTGTGTTTCTGTGCATCGCC
TGTGTGGCCTGCAATGAAAGGAGAATGAAAGTCCGCGCAAACCACGTGCT
CAGAAAAGAGTCAAGAACCAAGAAGTCAAGAAGTCACGACCCGGTTGCTT
TTGGTTCTAGCGACGCAGCACAGCAGTCAGTGTGGTTCTCATGTTCTCCT
ACAATACACACGGATGACGGATGACGGATGACGGATGACGGGCATGATGG
CATGACGGCAATAGTAGTGTAATACGCATGTACATAGTGACAGCCAGTGG
TTCCAGCAGAGCAGCTTCGTCTGGGATAGAGGCTGCAGGAAGAGGCCAAG
TCTTCTCTTCTGTGAGTGCTGGGTGTAACGTTTGGGTTGTGTGTCTCTGA
TGTGGTGGATGAAGTCCGTGCGTTGGGCGCGGACGTTGGCTCTCTCTGCT
CTGGAGACACGCCTGTGTCATGTTCCGTGCTGCAGCAGCACGCTTTTGGG
AGCGGAGCTGAACGTTCGATACCTTGCCCGGCTCGCTCTCTCCTCCGGCA
CCCCTGCCCGGTCTGTTGCTGCCGCCACGCCGCCGCCGCCGGGGGCCTGC
TGCAAGAAGTTAGACAATAGCTTGAATAGACAAGGCCCCAGTGTTCACCC
CCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAATGCACTGCA
AAGTGTAGTACCTCTAAGTACATCGCAAGGTGTAGTACACGTCTCCACTT
TGGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACACACACAC
AGACAGCAGTTGGTTGCAGAACAAGCCGTATGTAGTTTGGTAACCATCTC
AACACAGCAAATGTCTGGTTGCGTTGCCTGAGTTCATCCTAGGACCAGAG
ACAAGCAAAGTACCGCCCGCCGCATAACACCATGTATGTACGTACCTACA
TACCGTACGTACGTAGGTGACACAAGATTCCACACCCCCTGGACCGAATT
TTAGAGCTCCATTCTGGCTCCATTGCTCCCAAAACGACACGCTTTCGACC
AGCCCTAGACTAGACCTTCCCATCGCCACCCCCTTTCGGCACAGGCACCA
CTGTTCTTGCTGGGAAGAAATCGAGCTTTGAAAATCTATCCAGGGGGTGT
GTTATCTTGTGTCACCTACGATGGACGATGTAGACGAGGTTGAACCGCAC
TCCTGGGCAACGGGTTCACCCGCGGGGGCATAATTTTTTTTTAGTTATTT
AGACTATTCGTTTGGATACCGAGGTATTTACCAAACCAGGACGATGATCC
GAGTAATTTGGGGTAATAAATACAGAGGTAGGTTATTTTCTGTGTTCTGT
GTTTATCCTGGACACAAGTACAGTTACAACCCCCCCTGCTACGGTAGTAG
TACATAGCTGGCTCAACAAGACAACATGTTTCATCTTGTGTATCGGGCTA
TAGTAGGTTACATGTGTGTGTGGTGAGAGACAGGGGATCACGGTTAGTTT
CGAAGTTTTCTAATATTTTAGGTGTTTTTCTACTTTCTACTCGGCCGACC
AATATTTCATGCTGTATTTGAATTGTTTTTTCACCGCGGAGTCAGGGAGT
CCCGTGTCTTGTCGGGAGGGTCCCTCTTTTCTGAATTATTCTAGTCTAGA
CTAGGGTGCTGGCCTGTAGAACCGTTTCAACGAAGGTTTCAGAAGCTGTG
ACTGCCCACACCAGGGCGTCCGAAGGGCAGCAGTAGAAGAAGCCGAGTTG
GCCCTGTCACTGACACCCCCATCTCTAGTAACGTTTGCTACATCTTTTTG
TTACACTGCTGTCACTTTCCATCTTTGGCTGTCCTACCGGCCCGTGGTGT
GCGAATAAGTTAGGTGCCGTGACCGAGGAATGCCGACAGCAGTGCAACAG
CCGTGGTCGGCCAAGTCGATGTCGCGAGGCTTCCAGCGCGGTGGTAGACG
TTGTCGTTGCCGGCCTTGGGGCAGCACAGCATAGCCGAGAGTGGGAGAGA
GTGGGCGAGGAGGCGGCTTGGAAGGGAGACTGCAGCCGCACATTGATAGG
AAACGACACCATCACGCAGTTCAGGTAATCGAATATCCAGCCAACCGCAG
TTTCTGTCCTTGAAAAAGCTCCGACCCCGGCTCTTATGGTTTGTGCATTA
GCAGCGAGTATGAAAGCTTAACACTGGGATGCCGCCCGCCCCCTAGACGC
TACTTATGTTGGATGAGTGCCGAGGGGCTGCAGTCGGGTGTTGTCCGTGT
GGCGTCCAGCCCTGCTTTTTTAACGAAGAAAAACTCTGGAACCGTTTTCC
TTGCCTGCCCTACCCTTCCCCTTGAACCTCGGGCATGGCGACGCTTTTTT
TTTCTCCCAACAGATTTGCCAACAAGTGAGCTCTCCTGCCTTCAAAATCA
TTTTGTTCACGAAACGTGGTCATGTGATGGCGTTTTCATCAGCTGGGAGC
ACTTTCTCCCTTCGGTATGGTATTTACCGATGACAGGATGGCGATGTGGG
CAGGCAAGACCAAATGCGGCTGGATTCAAGGCGTTGTTCGGGAGGATGTC
TGGAGCCTGGAGGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13642:2113..4779-

>mRNA_L-elsbetiae_contig13642.2771.1 ID=mRNA_L-elsbetiae_contig13642.2771.1|Name=mRNA_L-elsbetiae_contig13642.2771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig13642:2113..4779- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTTGGTTGCTGCGGTTCGCAGTTTTCGGTGATGATGGTCGGCTGAA
AACTGCCTGCAGCCCAGGGTCTGCTGCCAGACTACGTGAACCCCCCCTGC
ATTTCCGAGGGTGCTTGGTTGCTGCGGTTCGCAGTTTTCGGTGATGATGG
TCGGCTGAAAACTGCCTGCAGCCCAGGGTCTGCTGCCAGACTACGTGAAC
CCCCCCTGCATTTCCGAGGTGCCGTGACCGAGGAATGCCGACAGCAGTGC
AACAGCCGTGGTCGGCCAAGTCGATGTCGCGAGGCTTCCAGCGCGGTGGT
AGACGTTGTCGTTGCCGGCCTTGGGGCAGCACAGCATAGCCGAGAGTGGG
AGAGAGTGGGCGAGGAGGCGGCTTGGAAGGGAGACTGCAGCCGCACATTG
ATAGGAAACGACACCATCACGCAGTTCAGGTGCCGTGACCGAGGAATGCC
GACAGCAGTGCAACAGCCGTGGTCGGCCAAGTCGATGTCGCGAGGCTTCC
AGCGCGGTGGTAGACGTTGTCGTTGCCGGCCTTGGGGCAGCACAGCATAG
CCGAGAGTGGGAGAGAGTGGGCGAGGAGGCGGCTTGGAAGGGAGACTGCA
GCCGCACATTGATAGGAAACGACACCATCACGCAGTTCAGATTTGCCAAC
AAGTGAATTTGCCAACAAGTGA
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