mRNA_L-elsbetiae_contig1363.2765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1363.2765.1
Unique NamemRNA_L-elsbetiae_contig1363.2765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1363.2765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1363contigL-elsbetiae_contig1363:26006..26449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size444
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1363.2765.1prot_L-elsbetiae_contig1363.2765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1363 26050..26385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.3820574-UTR-L-elsbetiae_contig1363:26005..260491622815529.3820574-UTR-L-elsbetiae_contig1363:26005..26049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 26006..26049 +
1691682942.5325925-UTR-L-elsbetiae_contig1363:26005..260491691682942.5325925-UTR-L-elsbetiae_contig1363:26005..26049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 26006..26049 +
1622815529.4140966-UTR-L-elsbetiae_contig1363:26385..264491622815529.4140966-UTR-L-elsbetiae_contig1363:26385..26449Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 26386..26449 +
1691682942.5525486-UTR-L-elsbetiae_contig1363:26385..264491691682942.5525486-UTR-L-elsbetiae_contig1363:26385..26449Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 26386..26449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.3958414-CDS-L-elsbetiae_contig1363:26049..263851622815529.3958414-CDS-L-elsbetiae_contig1363:26049..26385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1363 26050..26385 +
1691682942.5421803-CDS-L-elsbetiae_contig1363:26049..263851691682942.5421803-CDS-L-elsbetiae_contig1363:26049..26385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1363 26050..26385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1363.2765.1

>prot_L-elsbetiae_contig1363.2765.1 ID=prot_L-elsbetiae_contig1363.2765.1|Name=mRNA_L-elsbetiae_contig1363.2765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRLWCTLYIHACVFRIGGRSRVRADWRSRCSFDARCRSRRPDIFSRVLLR
GGVSSILFGRLFTRPPIMYGSCKKQSRGPCGGGGGRDSQAPSTVAAARTL
FWCDASYLHIF*
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mRNA from alignment at L-elsbetiae_contig1363:26006..26449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1363.2765.1 ID=mRNA_L-elsbetiae_contig1363.2765.1|Name=mRNA_L-elsbetiae_contig1363.2765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig1363:26006..26449+ (Laminarionema elsbetiae ELsaHSoW15)
TATTTTCCTCTTTGGTGGGTTGCGGCTCTGTGCATTTACAATGTATGCGT
TTGTGGTGTACATTGTACATACATGCATGCGTGTTTCGGATAGGCGGTAG
AAGCAGAGTCCGGGCGGACTGGAGGTCCCGGTGTTCATTTGACGCACGCT
GCCGGTCTCGGCGACCCGACATTTTCTCGCGGGTTTTGCTCCGGGGGGGG
GTATCATCCATTTTGTTCGGTCGTTTGTTTACCCGTCCGCCCATCATGTA
TGGCTCTTGCAAGAAACAAAGCCGAGGCCCTTGTGGCGGCGGCGGTGGTC
GTGACAGTCAAGCCCCGAGCACCGTGGCTGCCGCACGCACGCTCTTCTGG
TGTGACGCATCGTACTTGCATATATTCTAAAATCCATTCATGGTTTTTAG
TCCTTCTCCAACCAAACAGCTCAATCCTAAAAGGCTAAACCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1363:26006..26449+

>mRNA_L-elsbetiae_contig1363.2765.1 ID=mRNA_L-elsbetiae_contig1363.2765.1|Name=mRNA_L-elsbetiae_contig1363.2765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1363:26006..26449+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTTGTGGTGTACATTGTACATACATGCATGCGTGTTTCGGATAGG
CGGTAGAAGCAGAGTCCGGGCGGACTGGAGGTCCCGGTGTTCATTTGACG
CACGCTGCCGGTCTCGGCGACCCGACATTTTCTCGCGGGTTTTGCTCCGG
GGGGGGGTATCATCCATTTTGTTCGGTCGTTTGTTTACCCGTCCGCCCAT
CATGTATGGCTCTTGCAAGAAACAAAGCCGAGGCCCTTGTGGCGGCGGCG
GTGGTCGTGACAGTCAAGCCCCGAGCACCGTGGCTGCCGCACGCACGCTC
TTCTGGTGTGACGCATCGTACTTGCATATATTCTAAATGCGTTTGTGGTG
TACATTGTACATACATGCATGCGTGTTTCGGATAGGCGGTAGAAGCAGAG
TCCGGGCGGACTGGAGGTCCCGGTGTTCATTTGACGCACGCTGCCGGTCT
CGGCGACCCGACATTTTCTCGCGGGTTTTGCTCCGGGGGGGGGTATCATC
CATTTTGTTCGGTCGTTTGTTTACCCGTCCGCCCATCATGTATGGCTCTT
GCAAGAAACAAAGCCGAGGCCCTTGTGGCGGCGGCGGTGGTCGTGACAGT
CAAGCCCCGAGCACCGTGGCTGCCGCACGCACGCTCTTCTGGTGTGACGC
ATCGTACTTGCATATATTCTAA
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