mRNA_L-elsbetiae_contig1359.2728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1359.2728.1
Unique NamemRNA_L-elsbetiae_contig1359.2728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1359.2728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1359contigL-elsbetiae_contig1359:2341..3791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size966
Cds size933
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1359.2728.1prot_L-elsbetiae_contig1359.2728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1359 2372..3791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.66156-UTR-L-elsbetiae_contig1359:2340..23711622815525.66156-UTR-L-elsbetiae_contig1359:2340..2371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1359 2341..2371 +
1691682940.312626-UTR-L-elsbetiae_contig1359:2340..23711691682940.312626-UTR-L-elsbetiae_contig1359:2340..2371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1359 2341..2371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.6738827-CDS-L-elsbetiae_contig1359:2371..25451622815525.6738827-CDS-L-elsbetiae_contig1359:2371..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 2372..2545 +
1691682940.323629-CDS-L-elsbetiae_contig1359:2371..25451691682940.323629-CDS-L-elsbetiae_contig1359:2371..2545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 2372..2545 +
1622815525.6870358-CDS-L-elsbetiae_contig1359:2880..29971622815525.6870358-CDS-L-elsbetiae_contig1359:2880..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 2881..2997 +
1691682940.3325117-CDS-L-elsbetiae_contig1359:2880..29971691682940.3325117-CDS-L-elsbetiae_contig1359:2880..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 2881..2997 +
1622815525.6980941-CDS-L-elsbetiae_contig1359:3149..37911622815525.6980941-CDS-L-elsbetiae_contig1359:3149..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 3150..3791 +
1691682940.3414881-CDS-L-elsbetiae_contig1359:3149..37911691682940.3414881-CDS-L-elsbetiae_contig1359:3149..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1359 3150..3791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1359.2728.1

>prot_L-elsbetiae_contig1359.2728.1 ID=prot_L-elsbetiae_contig1359.2728.1|Name=mRNA_L-elsbetiae_contig1359.2728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MSSSAKRRLRTKERKEHERKRAKGEGEVVEPKIYRVWYYFRDAFFENNKT
LDRLDVLQVPDTIRKVPVEDAGKTIAGKQNVKGRRVFRAEAKERGVDPGR
MLEFRLFSRGEMIDMFIEASLLGEGFKTAGDLVAAAELEMQHTFGQGIIS
KEPSLQNAHLTLKALFLYTRSPVAERWVENREFWGGVLDVAVRSDAGLCL
LDVFKDEGDAKKAYEWMIAIDVDQTLPMANRIFATPMFANEINDDDANDD
AEGVGGEGVEGVGGDAGGVGGVGSDAGCVEGSSGKQRGRDEPGVNVLVRG
PEKKRASHAGA
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mRNA from alignment at L-elsbetiae_contig1359:2341..3791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1359.2728.1 ID=mRNA_L-elsbetiae_contig1359.2728.1|Name=mRNA_L-elsbetiae_contig1359.2728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1451bp|location=Sequence derived from alignment at L-elsbetiae_contig1359:2341..3791+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTGCTGACGTTCCGCCCGGACCCAAGATGTCCAGTTCCGCGAAGC
GAAGACTGAGAACCAAAGAGCGCAAGGAACACGAGCGAAAGCGCGCGAAA
GGGGAGGGGGAGGTGGTCGAACCCAAGATCTACAGGGTGTGGTACTATTT
TCGGGACGCGTTCTTCGAGAACAACAAGACGTTGGACCGTCTTGACGTGT
TGCAGGTGCGATTACTGCGGCTTGCCTTCATTTGTGTGCGCGTGCTGATT
CAGACCAGAAGCAGAGTTTTTCGTTGCCTAGTTCGTGTGTAGCAGAGTTG
TTGCTGCACATTTGTCACCCGGAAAAAAACGCTTGAATTTTGTTTTGGCC
TGCAACCTGTATCCGCTACTACTGTTGCAGTGTAGCACCATGGAGCACAC
GATCGAAGCGGCGCAAAGCCCAGATGCTGTCGCCCGTTGTGCGTGTGTCT
GCTGTGCGTGTGTGCCGCGCTACGTGGTGTTGTATTTTTTTTCGTATGGT
CTAAAATCAAGCGATGTGCTTCGCACTGTCTCCGTTACAGGTTCCGGACA
CGATCAGGAAAGTGCCCGTGGAGGACGCGGGCAAGACGATAGCTGGCAAA
CAGAACGTCAAGGGGCGTCGAGTGTTCAGGGCAGAAGCGAAAGAGCGGGG
AGTAGATGTGAGTACTACAAGTTGGTCGCAGCGGAGCGTCGCCGAACATC
GTATCCACACAATAGCCATCCTGTTCATCAGCGTCATTCTTTTGTATGGA
AGTGCTGACTAGACCTTGTTCGTTTGTTGCCTCACCGATTTGTTGTTATT
ACACCACAGCCTGGCAGAATGCTCGAATTCAGGCTATTCTCTCGCGGAGA
GATGATTGACATGTTCATCGAGGCGTCTCTTCTTGGCGAGGGCTTTAAGA
CCGCGGGGGACCTGGTAGCGGCAGCAGAACTAGAGATGCAGCACACATTC
GGGCAGGGTATCATCAGCAAGGAGCCATCGTTGCAGAACGCCCACCTGAC
ACTCAAAGCCTTGTTTCTGTACACTCGCTCTCCCGTTGCCGAGAGATGGG
TAGAGAACCGGGAGTTCTGGGGGGGGGTGCTTGATGTTGCTGTACGGAGT
GATGCTGGACTGTGCCTACTCGATGTGTTCAAAGACGAGGGAGATGCCAA
GAAGGCGTACGAGTGGATGATAGCGATCGATGTCGATCAGACGCTCCCCA
TGGCGAACCGCATCTTCGCCACCCCGATGTTTGCGAATGAAATCAATGAC
GATGATGCCAATGATGATGCAGAGGGTGTCGGTGGCGAGGGTGTTGAGGG
AGTCGGCGGTGATGCCGGGGGCGTGGGGGGAGTCGGTAGTGATGCCGGGT
GTGTTGAGGGAAGCAGCGGGAAGCAGCGTGGGCGTGACGAACCTGGTGTT
AATGTCCTCGTCCGCGGGCCGGAGAAGAAGCGAGCCTCGCATGCCGGCGC
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1359:2341..3791+

>mRNA_L-elsbetiae_contig1359.2728.1 ID=mRNA_L-elsbetiae_contig1359.2728.1|Name=mRNA_L-elsbetiae_contig1359.2728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig1359:2341..3791+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAGTTCCGCGAAGCGAAGACTGAGAACCAAAGAGCGCAAGGAACA
CGAGCGAAAGCGCGCGAAAGGGGAGGGGGAGGTGGTCGAACCCAAGATCT
ACAGGGTGTGGTACTATTTTCGGGACGCGTTCTTCGAGAACAACAAGACG
TTGGACCGTCTTGACGTGTTGCAGATGTCCAGTTCCGCGAAGCGAAGACT
GAGAACCAAAGAGCGCAAGGAACACGAGCGAAAGCGCGCGAAAGGGGAGG
GGGAGGTGGTCGAACCCAAGATCTACAGGGTGTGGTACTATTTTCGGGAC
GCGTTCTTCGAGAACAACAAGACGTTGGACCGTCTTGACGTGTTGCAGGT
TCCGGACACGATCAGGAAAGTGCCCGTGGAGGACGCGGGCAAGACGATAG
CTGGCAAACAGAACGTCAAGGGGCGTCGAGTGTTCAGGGCAGAAGCGAAA
GAGCGGGGAGTAGATGTTCCGGACACGATCAGGAAAGTGCCCGTGGAGGA
CGCGGGCAAGACGATAGCTGGCAAACAGAACGTCAAGGGGCGTCGAGTGT
TCAGGGCAGAAGCGAAAGAGCGGGGAGTAGATCCTGGCAGAATGCTCGAA
TTCAGGCTATTCTCTCGCGGAGAGATGATTGACATGTTCATCGAGGCGTC
TCTTCTTGGCGAGGGCTTTAAGACCGCGGGGGACCTGGTAGCGGCAGCAG
AACTAGAGATGCAGCACACATTCGGGCAGGGTATCATCAGCAAGGAGCCA
TCGTTGCAGAACGCCCACCTGACACTCAAAGCCTTGTTTCTGTACACTCG
CTCTCCCGTTGCCGAGAGATGGGTAGAGAACCGGGAGTTCTGGGGGGGGG
TGCTTGATGTTGCTGTACGGAGTGATGCTGGACTGTGCCTACTCGATGTG
TTCAAAGACGAGGGAGATGCCAAGAAGGCGTACGAGTGGATGATAGCGAT
CGATGTCGATCAGACGCTCCCCATGGCGAACCGCATCTTCGCCACCCCGA
TGTTTGCGAATGAAATCAATGACGATGATGCCAATGATGATGCAGAGGGT
GTCGGTGGCGAGGGTGTTGAGGGAGTCGGCGGTGATGCCGGGGGCGTGGG
GGGAGTCGGTAGTGATGCCGGGTGTGTTGAGGGAAGCAGCGGGAAGCAGC
GTGGGCGTGACGAACCTGGTGTTAATGTCCTCGTCCGCGGGCCGGAGAAG
AAGCGAGCCTCGCATGCCGGCGCACCTGGCAGAATGCTCGAATTCAGGCT
ATTCTCTCGCGGAGAGATGATTGACATGTTCATCGAGGCGTCTCTTCTTG
GCGAGGGCTTTAAGACCGCGGGGGACCTGGTAGCGGCAGCAGAACTAGAG
ATGCAGCACACATTCGGGCAGGGTATCATCAGCAAGGAGCCATCGTTGCA
GAACGCCCACCTGACACTCAAAGCCTTGTTTCTGTACACTCGCTCTCCCG
TTGCCGAGAGATGGGTAGAGAACCGGGAGTTCTGGGGGGGGGTGCTTGAT
GTTGCTGTACGGAGTGATGCTGGACTGTGCCTACTCGATGTGTTCAAAGA
CGAGGGAGATGCCAAGAAGGCGTACGAGTGGATGATAGCGATCGATGTCG
ATCAGACGCTCCCCATGGCGAACCGCATCTTCGCCACCCCGATGTTTGCG
AATGAAATCAATGACGATGATGCCAATGATGATGCAGAGGGTGTCGGTGG
CGAGGGTGTTGAGGGAGTCGGCGGTGATGCCGGGGGCGTGGGGGGAGTCG
GTAGTGATGCCGGGTGTGTTGAGGGAAGCAGCGGGAAGCAGCGTGGGCGT
GACGAACCTGGTGTTAATGTCCTCGTCCGCGGGCCGGAGAAGAAGCGAGC
CTCGCATGCCGGCGCA
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