mRNA_L-elsbetiae_contig13545.2709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13545.2709.1
Unique NamemRNA_L-elsbetiae_contig13545.2709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A1B6GU98_9HEMI (RBR-type E3 ubiquitin transferase (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6GU98_9HEMI)

HSP 1 Score: 77.0 bits (188), Expect = 4.250e-15
Identity = 32/97 (32.99%), Postives = 50/97 (51.55%), Query Frame = 1
Query:    1 CTQYMRGMSVQRCISRELATRIDAVQLEVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            C   ++G  +  C +RE          ++V + G    +D         D AS+  +   TKPCP C   T++ GGC H++C RCN+H+CW+C+ EW
Sbjct:  138 CRLCLQGYHIGECQTRE----------QIVASGGSSYSVDPNRAATARWDEASRVTIRVMTKPCPKCRTATERDGGCMHMVCTRCNFHWCWVCQTEW 224          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A1B6LBH9_9HEMI (E3 ubiquitin-protein ligase parkin n=4 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6LBH9_9HEMI)

HSP 1 Score: 75.5 bits (184), Expect = 7.190e-14
Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 1
Query:    1 CTQYMRGMSVQRCISRELATRIDAVQLEVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            C   ++G  +  C +RE           V P        ++  T R DE  AS+  +   TKPCP C   T++ GGC H++C RCN+H+CW+C+ EW
Sbjct:  361 CRLCLQGYHIGECQTREQIIASGNSSYSVDP--------NRAATARWDE--ASRVTIRVMTKPCPKCRTATERDGGCMHMVCTRCNFHWCWVCQTEW 447          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A1B6DHQ5_9HEMI (E3 ubiquitin-protein ligase parkin n=6 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DHQ5_9HEMI)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-12
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   82 EVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            +VV   G    +D         D AS+  +   TKPCP C   T++ GGC H++C RC++H+CW+C+ EW
Sbjct:  385 QVVENTGQGYSIDPSRAAFARWDEASKVTIKVMTKPCPKCRTATERDGGCMHMVCTRCSFHWCWVCQTEW 454          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A069DW64_9HEMI (RBR-type E3 ubiquitin transferase (Fragment) n=1 Tax=Panstrongylus megistus TaxID=65343 RepID=A0A069DW64_9HEMI)

HSP 1 Score: 68.2 bits (165), Expect = 2.440e-12
Identity = 25/75 (33.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   67 DAVQLEVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            D    +V+ T      +D         D A++  + + TKPCP C   T++TGGC H++C RC++ +CW+C+ +W
Sbjct:   60 DCESPDVLATTSSSYSVDATKAVHSRWDEATKLTIKTKTKPCPKCRTPTERTGGCMHMVCTRCDFEWCWVCQNDW 134          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A6B2LEK7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEK7_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 5.620e-12
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query:  106 EAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWIC 279
            E KL ++     DE  A +  +  YTKPCP CS   DK GGC H+ C+ C YH+CWIC
Sbjct:  172 EKKLKEKKELENDE--AYKRWIKQYTKPCPKCSSPIDKNGGCNHMTCRNCGYHFCWIC 227          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A161M792_TRIIF (RBR-type E3 ubiquitin transferase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161M792_TRIIF)

HSP 1 Score: 66.6 bits (161), Expect = 1.090e-11
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  148 DLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            D A++  + + TKPCP C   T++TGGC H++C RC++ +CW+C+ +W
Sbjct:  109 DEATKLTIKTKTKPCPKCRTPTERTGGCMHMVCTRCDFEWCWVCQNDW 156          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A4P6D6P2_RHOPR (E3 ubiquitin-protein ligase parkin n=2 Tax=Rhodnius TaxID=13248 RepID=A0A4P6D6P2_RHOPR)

HSP 1 Score: 68.2 bits (165), Expect = 2.750e-11
Identity = 28/97 (28.87%), Postives = 48/97 (49.48%), Query Frame = 1
Query:    1 CTQYMRGMSVQRCISRELATRIDAVQLEVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            C   ++G  ++ C S +              TI     +D         D A++  + + TKPCP C   T++TGGC H++C RC++ +CW+C+ +W
Sbjct:  364 CRNCLQGYHIEDCESPDAHA-----------TISASYSVDTTKAAHSRWDEATKHTIKTKTKPCPKCRTPTERTGGCMHMVCTRCDFEWCWVCQNDW 449          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A224XP42_9HEMI (E3 ubiquitin-protein ligase parkin n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XP42_9HEMI)

HSP 1 Score: 67.8 bits (164), Expect = 3.760e-11
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   82 EVVPTIGPEAKLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            +V+ T      +D         D A++  + + TKPCP C   T++TGGC H++C RC++ +CW+C+ +W
Sbjct:  380 DVLATTSSSYSVDATKAAHSRWDEATKLTIKTKTKPCPKCRTPTERTGGCMHMVCTRCDFEWCWVCQNDW 449          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: UPI0002659AEE (E3 ubiquitin-protein ligase parkin n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659AEE)

HSP 1 Score: 64.7 bits (156), Expect = 4.570e-10
Identity = 28/93 (30.11%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 CTQYMRGMSVQRCISRELATRIDAVQLEVVPTIGPEA-KLDQECTTRGDEDLASQALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWI 276
            C   ++G  +  C   ++A R   + ++   T G     +D++  +R   D +S+  +   TKPCP C   T+++GGC H+ C RC+  +CWI
Sbjct:  375 CRDCLQGAHIGPCQEEDVAERDLTLAMQREDTAGGTLFMVDEDRASRSRWDKSSRITIKGTTKPCPKCRTPTERSGGCMHMACGRCDLEWCWI 467          
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Match: A0A2J6TCT3_9HELO (Uncharacterized protein (Fragment) n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6TCT3_9HELO)

HSP 1 Score: 64.3 bits (155), Expect = 4.770e-10
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  109 AKLDQECTTRGDEDLASQALVASYTKPCPN--CSIDTDKTGGCKHIICKRCNYHYCWICRCEW 291
            A+ D     R D++ AS+ L+AS TK CPN  C    +K+GGC H+ CK+C Y +C++C   W
Sbjct:  225 AEYDAYRQERMDQEAASEKLIASTTKKCPNPRCGHGIEKSGGCDHMTCKQCRYQFCYVCLAAW 287          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13545.2709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6GU98_9HEMI4.250e-1532.99RBR-type E3 ubiquitin transferase (Fragment) n=2 T... [more]
A0A1B6LBH9_9HEMI7.190e-1435.05E3 ubiquitin-protein ligase parkin n=4 Tax=Cicadel... [more]
A0A1B6DHQ5_9HEMI2.260e-1238.57E3 ubiquitin-protein ligase parkin n=6 Tax=Clastop... [more]
A0A069DW64_9HEMI2.440e-1233.33RBR-type E3 ubiquitin transferase (Fragment) n=1 T... [more]
A0A6B2LEK7_9EUKA5.620e-1248.28Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A161M792_TRIIF1.090e-1143.75RBR-type E3 ubiquitin transferase (Fragment) n=1 T... [more]
A0A4P6D6P2_RHOPR2.750e-1128.87E3 ubiquitin-protein ligase parkin n=2 Tax=Rhodniu... [more]
A0A224XP42_9HEMI3.760e-1134.29E3 ubiquitin-protein ligase parkin n=1 Tax=Panstro... [more]
UPI0002659AEE4.570e-1030.11E3 ubiquitin-protein ligase parkin n=1 Tax=Galendr... [more]
A0A2J6TCT3_9HELO4.770e-1042.86Uncharacterized protein (Fragment) n=1 Tax=Hyalosc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13545contigL-elsbetiae_contig13545:3793..4083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2.1e-26
Seed eggNOG ortholog2880.D8LB33
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of intralumenal vesicle formation
EggNOG OGsKOG0006@1,KOG0006@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.6671333-CDS-L-elsbetiae_contig13545:3792..40711622815522.6671333-CDS-L-elsbetiae_contig13545:3792..4071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13545 3793..4071 -
1691682939.389969-CDS-L-elsbetiae_contig13545:3792..40711691682939.389969-CDS-L-elsbetiae_contig13545:3792..4071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13545 3793..4071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.6793752-UTR-L-elsbetiae_contig13545:4071..40831622815522.6793752-UTR-L-elsbetiae_contig13545:4071..4083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13545 4072..4083 -
1691682939.3999383-UTR-L-elsbetiae_contig13545:4071..40831691682939.3999383-UTR-L-elsbetiae_contig13545:4071..4083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13545 4072..4083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13545.2709.1prot_L-elsbetiae_contig13545.2709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13545 3793..4071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13545.2709.1

>prot_L-elsbetiae_contig13545.2709.1 ID=prot_L-elsbetiae_contig13545.2709.1|Name=mRNA_L-elsbetiae_contig13545.2709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MRGMSVQRCISRELATRIDAVQLEVVPTIGPEAKLDQECTTRGDEDLASQ
ALVASYTKPCPNCSIDTDKTGGCKHIICKRCNYHYCWICRCEW
back to top

mRNA from alignment at L-elsbetiae_contig13545:3793..4083-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13545.2709.1 ID=mRNA_L-elsbetiae_contig13545.2709.1|Name=mRNA_L-elsbetiae_contig13545.2709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig13545:3793..4083- (Laminarionema elsbetiae ELsaHSoW15)
TGCACCCAATACATGAGGGGAATGAGCGTTCAGCGCTGCATTAGTCGTGA GCTCGCGACTCGTATCGATGCTGTTCAGCTTGAAGTTGTCCCCACGATTG GGCCAGAAGCCAAGCTCGACCAGGAATGTACCACACGCGGAGACGAGGAT CTCGCGTCACAGGCGTTGGTGGCCAGTTACACCAAACCGTGCCCCAACTG CTCCATAGACACTGACAAGACCGGAGGGTGCAAGCACATTATCTGTAAAA GGTGCAACTATCATTACTGCTGGATCTGTCGGTGCGAATGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13545:3793..4083-

>mRNA_L-elsbetiae_contig13545.2709.1 ID=mRNA_L-elsbetiae_contig13545.2709.1|Name=mRNA_L-elsbetiae_contig13545.2709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig13545:3793..4083- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGGAATGAGCGTTCAGCGCTGCATTAGTCGTGAGCTCGCGACTCG
TATCGATGCTGTTCAGCTTGAAGTTGTCCCCACGATTGGGCCAGAAGCCA
AGCTCGACCAGGAATGTACCACACGCGGAGACGAGGATCTCGCGTCACAG
GCGTTGGTGGCCAGTTACACCAAACCGTGCCCCAACTGCTCCATAGACAC
TGACAAGACCGGAGGGTGCAAGCACATTATCTGTAAAAGGTGCAACTATC
ATTACTGCTGGATCTGTCGGTGCGAATGGATGAGGGGAATGAGCGTTCAG
CGCTGCATTAGTCGTGAGCTCGCGACTCGTATCGATGCTGTTCAGCTTGA
AGTTGTCCCCACGATTGGGCCAGAAGCCAAGCTCGACCAGGAATGTACCA
CACGCGGAGACGAGGATCTCGCGTCACAGGCGTTGGTGGCCAGTTACACC
AAACCGTGCCCCAACTGCTCCATAGACACTGACAAGACCGGAGGGTGCAA
GCACATTATCTGTAAAAGGTGCAACTATCATTACTGCTGGATCTGTCGGT
GCGAATGG
back to top