mRNA_L-elsbetiae_contig13491.2674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13491.2674.1
Unique NamemRNA_L-elsbetiae_contig13491.2674.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13491.2674.1 vs. uniprot
Match: D7FT52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT52_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.220e-21
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:  580 KVTSAYPQIAGKELTFGFKVIYSELEEKLGKQEVTEITKDMTLGPLDAFKKKMGF 744
            +V+SAYPQIAGKELTFGFKVIY++LE K+GKQEVTEITKDMTLGPLDAFKKKMGF
Sbjct:  162 QVSSAYPQIAGKELTFGFKVIYADLEAKMGKQEVTEITKDMTLGPLDAFKKKMGF 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13491.2674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT52_ECTSI1.220e-2189.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13491contigL-elsbetiae_contig13491:1380..3806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3.2e-20
Seed eggNOG ortholog2880.D7FT52
Hectar predicted targeting categoryother localisation
EggNOG OGs2C200@1,2S7SE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1471
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13491.2674.1prot_L-elsbetiae_contig13491.2674.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13491 2104..3287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.082921-UTR-L-elsbetiae_contig13491:1379..21031622815519.082921-UTR-L-elsbetiae_contig13491:1379..2103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 1380..2103 -
1691682937.4911826-UTR-L-elsbetiae_contig13491:1379..21031691682937.4911826-UTR-L-elsbetiae_contig13491:1379..2103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 1380..2103 -
1622815519.1263075-UTR-L-elsbetiae_contig13491:3287..38061622815519.1263075-UTR-L-elsbetiae_contig13491:3287..3806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 3288..3806 -
1691682937.5353725-UTR-L-elsbetiae_contig13491:3287..38061691682937.5353725-UTR-L-elsbetiae_contig13491:3287..3806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 3288..3806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.0968041-CDS-L-elsbetiae_contig13491:2103..21961622815519.0968041-CDS-L-elsbetiae_contig13491:2103..2196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 2104..2196 -
1691682937.5090535-CDS-L-elsbetiae_contig13491:2103..21961691682937.5090535-CDS-L-elsbetiae_contig13491:2103..2196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 2104..2196 -
1622815519.1068003-CDS-L-elsbetiae_contig13491:2898..29701622815519.1068003-CDS-L-elsbetiae_contig13491:2898..2970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 2899..2970 -
1691682937.5180473-CDS-L-elsbetiae_contig13491:2898..29701691682937.5180473-CDS-L-elsbetiae_contig13491:2898..2970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 2899..2970 -
1622815519.116628-CDS-L-elsbetiae_contig13491:3224..32871622815519.116628-CDS-L-elsbetiae_contig13491:3224..3287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 3225..3287 -
1691682937.5269105-CDS-L-elsbetiae_contig13491:3224..32871691682937.5269105-CDS-L-elsbetiae_contig13491:3224..3287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 3225..3287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13491.2674.1

>prot_L-elsbetiae_contig13491.2674.1 ID=prot_L-elsbetiae_contig13491.2674.1|Name=mRNA_L-elsbetiae_contig13491.2674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MAFRKHPGENWDRHYSRRCLKVTSAYPQIAGKELTFGFKVIYSELEEKLG
KQEVTEITKDMTLGPLDAFKKKMGF*
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mRNA from alignment at L-elsbetiae_contig13491:1380..3806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13491.2674.1 ID=mRNA_L-elsbetiae_contig13491.2674.1|Name=mRNA_L-elsbetiae_contig13491.2674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2427bp|location=Sequence derived from alignment at L-elsbetiae_contig13491:1380..3806- (Laminarionema elsbetiae ELsaHSoW15)
GTCACGCCACCAGCAGGCAACCCCCAGGCAGCAGTCCTTATACAAATGTC
CGCAAGCACTTTATATGCCGGAATTTCGCTTGGAACTGAGGTGTAAACGC
TTTTGCGCTGGTGGAGTCGCCAAATCGCCTGATCCTCAGGCACGAATTGG
TGCAGACAAACAACTCCGTAGAAGCTGAACACCCTGCTAAACATTCGGAT
CGGCACGCCGGCGGTCGTGGTCGGCGTGCAAAGAATATCTAAAATCGACC
ATCGTCAAGTCTGAACGCCAGTCGTGCAGCGGGGTAGCCTTAAGAACGGC
AAGCAAGATCATATGCCTATTGTACCTCCACCAGTATTTATCACAATGTG
GGATCGGCCATGCCTGGCCATGCTTTAGGCAAAGTCATACGCCTATTGTA
CCTCCACCAGTATTTATCACAATGTGGGATCGGCCATGCCTGGCCATGCT
TTAGGCCAAAGATGAGCACTGGTGTGTTACCCACGTGGTGCGGTTCTTGG
AGAGTGTACTTCTTGGTGGATGGCGTTTCGAAAGCACCCTGGTGAAAACT
GGGATCGGCACTACAGCCGGAGGTGTTTGAAGGTATGTAACTGCCAGTAG
TTCCTCATGGCCAAACGAGCTGTGGGGATCTGCAGATTGGGAAAATGTTG
TCTCGAAGAAAAAAACATGCCTTTTTTTGTGAGGGAGCAACACTTTTGCT
CCACCAAAAGAGTGCCACAGACGGCGCCCCGTGCGTGATGTGTTGATGAT
TTTCGTTTATTTTTCGCGATTTTTGTACGATTTTGTGCGTGTCTCGCCGT
ACTCTGCCCCCCACTGCTTCCTCTTCTGCCTCGCAGGTCACCTCGGCGTA
TCCTCAGATCGCTGGCAAGGAGCTGACGTTCGGCTTCAAAGTCATATACT
CGGAGCTGGTATGAATGCAGCTCTCTGTATGTTACCTCCCATATGCCGTT
GCTCAGCTAACTGCAGCTGCTGCTGTTGCTGAGGTGTTGTCGAGTCGACG
GCGCGTTTACTCGCAACCCAAGAATGCTTAGAAGGCTCCACGCCGTTCTG
TTCTTTGGTTTTGACCGCTGGTGTTGCCGATGTCATCGCGTTTGTTGATG
TTTTTCTGCTCGAAAGCCAGACCAAGGTTGGTTGTGTCCCTCGCTATTTG
TTGGTTAATGGCGTGTTGGTGCAGCTGCTATACATGCCAGTGGGCAGGCT
GGATCCCGGTCGCGTGAAGATTAAGATTTAGGGTTTTTCCTTTCCTTCAA
CAGTAGTCGGTGCAGCGAGCTGCCAGACATGGTCACAATTTTGTAGACGG
GTTTCTTTTTTTCTGGACTACATACTTGATGACATCTTGAGGTCCAAAGG
AAACGAGCGAAGTGCAGAAAACAGTTCGCCCGCCGCTTTTGCCTGGTAGT
TTGCTCGAGGCGGCCGCAAGGGGCGCCGCGGGACGTATAACTGGGATGCA
TGGCATGTAGCATATTTCGTCCAAACACGCACACGGGCGGTACATCTATC
TAAAATTCTAGAGTTTCGTGGCCAATACTTGTGCCTGGTGTGCTGACTGC
TGACAGACACCCTGTAACTCATTCGCAACTCGTTTCTGTCTGCATGTTTG
TTTTGCGCAGGAGGAAAAGTTGGGCAAGCAGGAGGTGACAGAAATCACGA
AAGACATGACCTTGGGACCTCTGGATGCATTCAAGAAGAAGATGGGCTTT
TAGATTGGAGCAAGGTCGAGTTTGCTTCTTGGAGGCTCCCGTGGAGCGGA
ACTCATCCACAGCTGTGGCGGCGCGTGAGGGGTCTCGCAATCATCACCCC
GGCGCAAATTTGGTTCCGCGATGATGGCACACTGCTGTGTGCTGTAGATC
TGCGACATCGTACTCCTCGAGATGTTGCGTCTCCTCTAATGAGTAAATTA
TCACCGGCGTGTCTTTGACGAACCCGACGTACATATGACGGAGACAGCGC
GGGGGGGGGAGGGGGAGGGTTGCCACTTGTCTCTCCAAGTTTCTTCTTTT
GATGTAATCCTTTTCCATTAGTGATTTTTGTGGCGACACCAATCCGATAC
TGCGAGGGGGCTGTGAGGTGTTCTTATTTCCTCGGTAGAAAAACGAAGTG
AGTGCGGCTACGGTCTGCGAGAAGGATTGCAACTTTATCAAAGTGTGATC
GTACCCATCGTTGTCTTAAAGTTTACTTGCCGCTTCTTTGTGGTGGCAGG
ATCAGCTGCTGTGGTACATGCAGGTGTGCACACGCACGACATTTTCGATC
CGCGGGACCTCCGTAGGGGGTGCCACGGGGTGAACGGATTGGCTGAGAGA
GAGGCTTGAACAAGCGCCTAATGTCGTCAAGCCTCCCATACGATTCTTAC
CTAAATATGCATGAAAAGTCTATACATACACATGGTCCGTTCACAACAAT
TTGTCCAATAACTTCCCCGGCACCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13491:1380..3806-

>mRNA_L-elsbetiae_contig13491.2674.1 ID=mRNA_L-elsbetiae_contig13491.2674.1|Name=mRNA_L-elsbetiae_contig13491.2674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig13491:1380..3806- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTTCGAAAGCACCCTGGTGAAAACTGGGATCGGCACTACAGCCG
GAGGTGTTTGAAGATGGCGTTTCGAAAGCACCCTGGTGAAAACTGGGATC
GGCACTACAGCCGGAGGTGTTTGAAGGTCACCTCGGCGTATCCTCAGATC
GCTGGCAAGGAGCTGACGTTCGGCTTCAAAGTCATATACTCGGAGCTGGT
CACCTCGGCGTATCCTCAGATCGCTGGCAAGGAGCTGACGTTCGGCTTCA
AAGTCATATACTCGGAGCTGGAGGAAAAGTTGGGCAAGCAGGAGGTGACA
GAAATCACGAAAGACATGACCTTGGGACCTCTGGATGCATTCAAGAAGAA
GATGGGCTTTTAGGAGGAAAAGTTGGGCAAGCAGGAGGTGACAGAAATCA
CGAAAGACATGACCTTGGGACCTCTGGATGCATTCAAGAAGAAGATGGGC
TTTTAG
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